EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020016767 (Gene tree)
Gene ID: -
Gene Symbol: trub1
Alias: -
Full Name: TruB pseudouridine (psi) synthase family member 1
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 4833 bases
Position: chr19:20471043-20475875
Accession: ZDB-GENE-080723-73
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020031634	TruB_N	PF01509.18	1.2e-45	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020023848	-	1442	-	ENSORLP00020031634	283 (aa)	-	-

Gene Model

Click here to download ENSORLG00020016767's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020016767's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020016767	trub1	91	64.773	ENSG00000165832	TRUB1	76	64.773	Homo_sapiens
ENSORLG00020016767	trub1	92	86.100	ENSAPOG00000020565	trub1	99	82.117	Acanthochromis_polyacanthus
ENSORLG00020016767	trub1	85	68.724	ENSAMEG00000014931	TRUB1	69	68.724	Ailuropoda_melanoleuca
ENSORLG00020016767	trub1	95	76.580	ENSACIG00000003060	trub1	90	76.580	Amphilophus_citrinellus
ENSORLG00020016767	trub1	92	85.714	ENSAOCG00000017188	trub1	99	82.117	Amphiprion_ocellaris
ENSORLG00020016767	trub1	92	85.328	ENSAPEG00000015209	trub1	99	81.752	Amphiprion_percula
ENSORLG00020016767	trub1	87	86.531	ENSATEG00000023291	trub1	87	86.831	Anabas_testudineus
ENSORLG00020016767	trub1	85	68.465	ENSAPLG00000006808	TRUB1	86	68.465	Anas_platyrhynchos
ENSORLG00020016767	trub1	85	65.975	ENSACAG00000009282	TRUB1	87	65.975	Anolis_carolinensis
ENSORLG00020016767	trub1	85	68.880	ENSANAG00000022870	TRUB1	69	68.880	Aotus_nancymaae
ENSORLG00020016767	trub1	97	80.727	ENSACLG00000000823	trub1	99	80.727	Astatotilapia_calliptera
ENSORLG00020016767	trub1	95	72.761	ENSAMXG00000015845	trub1	87	73.563	Astyanax_mexicanus
ENSORLG00020016767	trub1	86	69.421	ENSBTAG00000012955	TRUB1	69	69.421	Bos_taurus
ENSORLG00020016767	trub1	85	68.880	ENSCJAG00000047815	TRUB1	69	68.880	Callithrix_jacchus
ENSORLG00020016767	trub1	85	68.880	ENSCAFG00000011688	TRUB1	69	68.880	Canis_familiaris
ENSORLG00020016767	trub1	85	68.880	ENSCAFG00020013237	TRUB1	69	68.880	Canis_lupus_dingo
ENSORLG00020016767	trub1	86	69.008	ENSCHIG00000020884	TRUB1	72	69.295	Capra_hircus
ENSORLG00020016767	trub1	85	68.050	ENSTSYG00000000446	TRUB1	69	68.050	Carlito_syrichta
ENSORLG00020016767	trub1	73	61.058	ENSCAPG00000017088	TRUB1	80	61.058	Cavia_aperea
ENSORLG00020016767	trub1	64	67.033	ENSCPOG00000040236	-	75	67.033	Cavia_porcellus
ENSORLG00020016767	trub1	73	60.680	ENSCPOG00000030129	-	72	65.946	Cavia_porcellus
ENSORLG00020016767	trub1	85	68.880	ENSCCAG00000028842	TRUB1	69	68.880	Cebus_capucinus
ENSORLG00020016767	trub1	85	68.880	ENSCATG00000033431	TRUB1	69	68.880	Cercocebus_atys
ENSORLG00020016767	trub1	64	65.934	ENSCLAG00000008664	TRUB1	75	65.934	Chinchilla_lanigera
ENSORLG00020016767	trub1	85	68.880	ENSCSAG00000004891	TRUB1	69	68.880	Chlorocebus_sabaeus
ENSORLG00020016767	trub1	85	61.826	ENSCHOG00000011931	TRUB1	69	61.826	Choloepus_hoffmanni
ENSORLG00020016767	trub1	85	71.784	ENSCPBG00000003051	TRUB1	83	71.784	Chrysemys_picta_bellii
ENSORLG00020016767	trub1	85	68.880	ENSCANG00000029445	TRUB1	69	68.880	Colobus_angolensis_palliatus
ENSORLG00020016767	trub1	74	67.943	ENSCGRG00001016772	-	70	67.773	Cricetulus_griseus_chok1gshd
ENSORLG00020016767	trub1	83	60.000	ENSCGRG00001010322	-	69	56.809	Cricetulus_griseus_chok1gshd
ENSORLG00020016767	trub1	83	67.660	ENSCGRG00000010806	Trub1	74	67.355	Cricetulus_griseus_crigri
ENSORLG00020016767	trub1	91	75.097	ENSCSEG00000011261	trub1	84	74.903	Cynoglossus_semilaevis
ENSORLG00020016767	trub1	96	78.676	ENSCVAG00000008791	trub1	81	79.623	Cyprinodon_variegatus
ENSORLG00020016767	trub1	98	67.944	ENSDARG00000053805	trub1	93	69.485	Danio_rerio
ENSORLG00020016767	trub1	85	66.805	ENSDNOG00000001069	TRUB1	69	66.805	Dasypus_novemcinctus
ENSORLG00020016767	trub1	83	68.085	ENSDORG00000010431	Trub1	70	68.050	Dipodomys_ordii
ENSORLG00020016767	trub1	68	66.912	ENSETEG00000009183	TRUB1	56	66.912	Echinops_telfairi
ENSORLG00020016767	trub1	85	68.465	ENSEASG00005014739	TRUB1	69	68.465	Equus_asinus_asinus
ENSORLG00020016767	trub1	85	68.465	ENSECAG00000007177	TRUB1	69	68.465	Equus_caballus
ENSORLG00020016767	trub1	85	60.581	ENSEEUG00000013993	TRUB1	67	60.581	Erinaceus_europaeus
ENSORLG00020016767	trub1	89	77.689	ENSELUG00000000502	trub1	87	77.600	Esox_lucius
ENSORLG00020016767	trub1	89	66.798	ENSFCAG00000031927	TRUB1	69	69.295	Felis_catus
ENSORLG00020016767	trub1	75	67.925	ENSFALG00000002232	TRUB1	81	67.925	Ficedula_albicollis
ENSORLG00020016767	trub1	64	67.582	ENSFDAG00000008140	TRUB1	75	67.582	Fukomys_damarensis
ENSORLG00020016767	trub1	96	78.755	ENSFHEG00000004016	trub1	93	78.755	Fundulus_heteroclitus
ENSORLG00020016767	trub1	85	67.220	ENSGALG00000009091	TRUB1	85	67.220	Gallus_gallus
ENSORLG00020016767	trub1	91	81.783	ENSGAFG00000009193	trub1	90	81.008	Gambusia_affinis
ENSORLG00020016767	trub1	69	84.536	ENSGACG00000015387	trub1	95	84.536	Gasterosteus_aculeatus
ENSORLG00020016767	trub1	86	71.901	ENSGAGG00000009758	TRUB1	69	72.199	Gopherus_agassizii
ENSORLG00020016767	trub1	91	64.773	ENSGGOG00000004583	TRUB1	76	64.773	Gorilla_gorilla
ENSORLG00020016767	trub1	97	81.091	ENSHBUG00000016787	trub1	99	81.091	Haplochromis_burtoni
ENSORLG00020016767	trub1	89	61.798	ENSHGLG00000015314	TRUB1	77	61.798	Heterocephalus_glaber_female
ENSORLG00020016767	trub1	64	67.033	ENSHGLG00100009183	TRUB1	77	67.033	Heterocephalus_glaber_male
ENSORLG00020016767	trub1	99	76.344	ENSHCOG00000017877	trub1	94	78.030	Hippocampus_comes
ENSORLG00020016767	trub1	92	74.144	ENSIPUG00000017559	trub1	92	74.046	Ictalurus_punctatus
ENSORLG00020016767	trub1	89	66.142	ENSSTOG00000003641	TRUB1	72	68.619	Ictidomys_tridecemlineatus
ENSORLG00020016767	trub1	85	67.635	ENSJJAG00000011800	Trub1	71	67.635	Jaculus_jaculus
ENSORLG00020016767	trub1	98	80.435	ENSKMAG00000006232	trub1	99	80.435	Kryptolebias_marmoratus
ENSORLG00020016767	trub1	98	78.648	ENSLBEG00000026722	trub1	98	78.648	Labrus_bergylta
ENSORLG00020016767	trub1	99	65.636	ENSLACG00000014885	TRUB1	92	67.636	Latimeria_chalumnae
ENSORLG00020016767	trub1	96	69.963	ENSLOCG00000012979	trub1	87	73.047	Lepisosteus_oculatus
ENSORLG00020016767	trub1	91	65.370	ENSLAFG00000015452	TRUB1	79	62.455	Loxodonta_africana
ENSORLG00020016767	trub1	85	68.880	ENSMFAG00000031767	TRUB1	69	68.880	Macaca_fascicularis
ENSORLG00020016767	trub1	85	68.880	ENSMMUG00000001902	TRUB1	69	68.880	Macaca_mulatta
ENSORLG00020016767	trub1	85	63.071	ENSMNEG00000044646	TRUB1	68	63.485	Macaca_nemestrina
ENSORLG00020016767	trub1	85	68.880	ENSMLEG00000042655	TRUB1	69	68.880	Mandrillus_leucophaeus
ENSORLG00020016767	trub1	97	80.364	ENSMZEG00005024095	trub1	99	80.364	Maylandia_zebra
ENSORLG00020016767	trub1	85	67.635	ENSMGAG00000011135	TRUB1	83	67.635	Meleagris_gallopavo
ENSORLG00020016767	trub1	83	66.383	ENSMAUG00000011101	Trub1	71	66.116	Mesocricetus_auratus
ENSORLG00020016767	trub1	86	68.182	ENSMICG00000016324	TRUB1	69	68.465	Microcebus_murinus
ENSORLG00020016767	trub1	84	67.364	ENSMOCG00000017759	Trub1	74	67.073	Microtus_ochrogaster
ENSORLG00020016767	trub1	86	69.421	ENSMODG00000009676	TRUB1	67	69.421	Monodelphis_domestica
ENSORLG00020016767	trub1	84	68.067	MGP_CAROLIEiJ_G0023100	Trub1	75	67.742	Mus_caroli
ENSORLG00020016767	trub1	84	67.227	ENSMUSG00000025086	Trub1	75	66.667	Mus_musculus
ENSORLG00020016767	trub1	85	67.220	MGP_PahariEiJ_G0014588	Trub1	71	67.220	Mus_pahari
ENSORLG00020016767	trub1	84	67.227	MGP_SPRETEiJ_G0024021	Trub1	75	66.667	Mus_spretus
ENSORLG00020016767	trub1	85	69.295	ENSMPUG00000003556	TRUB1	69	69.295	Mustela_putorius_furo
ENSORLG00020016767	trub1	85	68.050	ENSMLUG00000017686	TRUB1	71	68.050	Myotis_lucifugus
ENSORLG00020016767	trub1	85	68.465	ENSNGAG00000018682	Trub1	69	68.465	Nannospalax_galili
ENSORLG00020016767	trub1	90	84.314	ENSNBRG00000023393	trub1	90	84.524	Neolamprologus_brichardi
ENSORLG00020016767	trub1	91	64.773	ENSNLEG00000016345	TRUB1	76	64.773	Nomascus_leucogenys
ENSORLG00020016767	trub1	71	70.647	ENSMEUG00000006603	TRUB1	75	70.297	Notamacropus_eugenii
ENSORLG00020016767	trub1	85	67.220	ENSOPRG00000009371	TRUB1	70	66.942	Ochotona_princeps
ENSORLG00020016767	trub1	88	65.339	ENSODEG00000010854	TRUB1	69	66.390	Octodon_degus
ENSORLG00020016767	trub1	95	81.041	ENSONIG00000007249	trub1	98	81.041	Oreochromis_niloticus
ENSORLG00020016767	trub1	85	68.880	ENSOANG00000001556	TRUB1	80	68.880	Ornithorhynchus_anatinus
ENSORLG00020016767	trub1	90	66.142	ENSOCUG00000009456	TRUB1	70	68.050	Oryctolagus_cuniculus
ENSORLG00020016767	trub1	99	99.642	ENSORLG00000029719	trub1	100	99.642	Oryzias_latipes
ENSORLG00020016767	trub1	99	98.208	ENSORLG00015014728	trub1	100	98.208	Oryzias_latipes_hsok
ENSORLG00020016767	trub1	100	90.877	ENSOMEG00000014556	trub1	100	90.877	Oryzias_melastigma
ENSORLG00020016767	trub1	85	68.880	ENSOGAG00000015895	TRUB1	69	68.880	Otolemur_garnettii
ENSORLG00020016767	trub1	85	67.742	ENSOARG00000015591	TRUB1	76	64.312	Ovis_aries
ENSORLG00020016767	trub1	91	64.773	ENSPPAG00000043645	TRUB1	76	64.773	Pan_paniscus
ENSORLG00020016767	trub1	89	66.403	ENSPPRG00000007096	TRUB1	69	68.880	Panthera_pardus
ENSORLG00020016767	trub1	89	66.403	ENSPTIG00000006378	TRUB1	69	68.880	Panthera_tigris_altaica
ENSORLG00020016767	trub1	91	64.773	ENSPTRG00000002964	TRUB1	76	64.773	Pan_troglodytes
ENSORLG00020016767	trub1	85	68.880	ENSPANG00000020712	TRUB1	69	68.880	Papio_anubis
ENSORLG00020016767	trub1	60	76.023	ENSPKIG00000003852	trub1	74	76.023	Paramormyrops_kingsleyae
ENSORLG00020016767	trub1	87	70.732	ENSPSIG00000012877	TRUB1	83	71.488	Pelodiscus_sinensis
ENSORLG00020016767	trub1	99	73.477	ENSPMGG00000000075	trub1	98	73.118	Periophthalmus_magnuspinnatus
ENSORLG00020016767	trub1	91	65.370	ENSPEMG00000011156	Trub1	71	68.182	Peromyscus_maniculatus_bairdii
ENSORLG00020016767	trub1	85	69.710	ENSPCIG00000009729	TRUB1	65	69.710	Phascolarctos_cinereus
ENSORLG00020016767	trub1	94	80.150	ENSPFOG00000009950	trub1	94	81.395	Poecilia_formosa
ENSORLG00020016767	trub1	96	79.853	ENSPLAG00000013855	trub1	95	79.853	Poecilia_latipinna
ENSORLG00020016767	trub1	96	80.220	ENSPMEG00000009064	trub1	98	80.220	Poecilia_mexicana
ENSORLG00020016767	trub1	96	79.853	ENSPREG00000003343	trub1	98	79.853	Poecilia_reticulata
ENSORLG00020016767	trub1	91	64.394	ENSPPYG00000002676	TRUB1	76	64.394	Pongo_abelii
ENSORLG00020016767	trub1	91	60.465	ENSPCAG00000008427	TRUB1	68	62.656	Procavia_capensis
ENSORLG00020016767	trub1	86	62.397	ENSPCOG00000024360	TRUB1	67	61.826	Propithecus_coquereli
ENSORLG00020016767	trub1	71	69.652	ENSPVAG00000007575	TRUB1	76	69.652	Pteropus_vampyrus
ENSORLG00020016767	trub1	97	81.091	ENSPNYG00000018614	trub1	99	81.091	Pundamilia_nyererei
ENSORLG00020016767	trub1	95	63.704	ENSPNAG00000006881	trub1	85	64.368	Pygocentrus_nattereri
ENSORLG00020016767	trub1	86	66.116	ENSRNOG00000017321	Trub1	71	65.844	Rattus_norvegicus
ENSORLG00020016767	trub1	85	60.082	ENSRBIG00000033423	TRUB1	66	60.082	Rhinopithecus_bieti
ENSORLG00020016767	trub1	85	68.880	ENSRROG00000033902	TRUB1	69	68.880	Rhinopithecus_roxellana
ENSORLG00020016767	trub1	85	68.880	ENSSBOG00000024237	TRUB1	69	68.880	Saimiri_boliviensis_boliviensis
ENSORLG00020016767	trub1	74	69.340	ENSSHAG00000009346	TRUB1	71	69.340	Sarcophilus_harrisii
ENSORLG00020016767	trub1	98	72.043	ENSSFOG00015022124	trub1	90	74.621	Scleropages_formosus
ENSORLG00020016767	trub1	97	80.657	ENSSMAG00000001020	trub1	98	80.657	Scophthalmus_maximus
ENSORLG00020016767	trub1	96	81.550	ENSSDUG00000016414	trub1	97	81.550	Seriola_dumerili
ENSORLG00020016767	trub1	96	81.550	ENSSLDG00000015486	trub1	97	81.550	Seriola_lalandi_dorsalis
ENSORLG00020016767	trub1	92	67.300	ENSSPUG00000001642	TRUB1	84	70.082	Sphenodon_punctatus
ENSORLG00020016767	trub1	92	84.556	ENSSPAG00000001217	trub1	93	84.556	Stegastes_partitus
ENSORLG00020016767	trub1	85	68.880	ENSSSCG00000010653	TRUB1	70	68.880	Sus_scrofa
ENSORLG00020016767	trub1	85	68.465	ENSTGUG00000010971	TRUB1	86	68.465	Taeniopygia_guttata
ENSORLG00020016767	trub1	74	57.416	ENSTBEG00000002880	TRUB1	82	57.416	Tupaia_belangeri
ENSORLG00020016767	trub1	71	69.154	ENSTTRG00000005767	TRUB1	77	69.154	Tursiops_truncatus
ENSORLG00020016767	trub1	85	69.295	ENSUAMG00000024876	TRUB1	69	69.295	Ursus_americanus
ENSORLG00020016767	trub1	85	69.295	ENSUMAG00000002411	TRUB1	72	69.295	Ursus_maritimus
ENSORLG00020016767	trub1	85	68.880	ENSVPAG00000005507	TRUB1	69	68.880	Vicugna_pacos
ENSORLG00020016767	trub1	86	68.595	ENSVVUG00000010085	TRUB1	58	68.595	Vulpes_vulpes
ENSORLG00020016767	trub1	87	68.571	ENSXETG00000023828	trub1	88	68.724	Xenopus_tropicalis
ENSORLG00020016767	trub1	86	83.607	ENSXCOG00000017847	trub1	86	83.471	Xiphophorus_couchianus
ENSORLG00020016767	trub1	96	79.853	ENSXMAG00000014701	trub1	98	79.853	Xiphophorus_maculatus