EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020016909 (Gene tree)
Gene ID: -
Gene Symbol: cirbpa
Alias: -
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 5207 bases
Position: chr17:19895446-19900652
Accession: 101165004
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020015865	RRM_1	PF00076.22	7.5e-26	1	1
ENSORLP00020015881	RRM_1	PF00076.22	8.8e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020023999	-	486	-	ENSORLP00020015865	161 (aa)	-	-
ENSORLT00020033640	-	3791	-	ENSORLP00020015881	174 (aa)	XP_004079241	UPI0002A48F86

Gene Model

Click here to download ENSORLG00020016909's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020016909's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020016909	cirbpa	54	36.111	ENSORLG00020012447	-	60	36.111
ENSORLG00020016909	cirbpa	82	37.333	ENSORLG00020016040	ELAVL2	57	36.986
ENSORLG00020016909	cirbpa	88	37.895	ENSORLG00020022487	-	51	42.466
ENSORLG00020016909	cirbpa	56	33.696	ENSORLG00020011157	-	54	35.135
ENSORLG00020016909	cirbpa	50	50.685	ENSORLG00020006582	hnrnpa1a	69	50.685

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020016909	cirbpa	55	97.753	ENSAPOG00000004458	cirbpa	69	82.031	Acanthochromis_polyacanthus
ENSORLG00020016909	cirbpa	100	88.202	ENSACIG00000016116	cirbpa	100	83.146	Amphilophus_citrinellus
ENSORLG00020016909	cirbpa	98	72.626	ENSAOCG00000016212	cirbpa	100	69.110	Amphiprion_ocellaris
ENSORLG00020016909	cirbpa	100	70.745	ENSAPEG00000011989	cirbpa	100	69.110	Amphiprion_percula
ENSORLG00020016909	cirbpa	100	82.065	ENSATEG00000014985	cirbpa	100	80.435	Anabas_testudineus
ENSORLG00020016909	cirbpa	100	89.326	ENSACLG00000002094	-	100	83.708	Astatotilapia_calliptera
ENSORLG00020016909	cirbpa	100	54.902	ENSAMXG00000015612	cirbpb	82	57.143	Astyanax_mexicanus
ENSORLG00020016909	cirbpa	100	63.590	ENSCSEG00000014344	cirbpa	100	64.103	Cynoglossus_semilaevis
ENSORLG00020016909	cirbpa	100	79.459	ENSCVAG00000004853	cirbpa	100	83.243	Cyprinodon_variegatus
ENSORLG00020016909	cirbpa	100	54.497	ENSDARG00000103672	cirbpa	100	56.614	Danio_rerio
ENSORLG00020016909	cirbpa	98	83.140	ENSFHEG00000002580	cirbpa	100	88.000	Fundulus_heteroclitus
ENSORLG00020016909	cirbpa	99	50.000	ENSGMOG00000007179	cirbpb	98	51.269	Gadus_morhua
ENSORLG00020016909	cirbpa	100	81.081	ENSGAFG00000008654	cirbpa	100	80.000	Gambusia_affinis
ENSORLG00020016909	cirbpa	100	63.793	ENSGACG00000014978	-	100	63.218	Gasterosteus_aculeatus
ENSORLG00020016909	cirbpa	100	64.767	ENSGACG00000015206	cirbpa	100	67.368	Gasterosteus_aculeatus
ENSORLG00020016909	cirbpa	98	81.461	ENSHBUG00000022060	cirbpa	100	82.703	Haplochromis_burtoni
ENSORLG00020016909	cirbpa	100	86.364	ENSKMAG00000005905	cirbpa	100	77.143	Kryptolebias_marmoratus
ENSORLG00020016909	cirbpa	65	79.245	ENSLBEG00000027731	-	64	86.076	Labrus_bergylta
ENSORLG00020016909	cirbpa	100	64.773	ENSLBEG00000000292	cirbpa	100	64.481	Labrus_bergylta
ENSORLG00020016909	cirbpa	100	76.630	ENSMAMG00000010168	cirbpa	100	80.435	Mastacembelus_armatus
ENSORLG00020016909	cirbpa	98	81.461	ENSMZEG00005025577	-	100	82.703	Maylandia_zebra
ENSORLG00020016909	cirbpa	98	78.333	ENSMALG00000020092	cirbpa	99	83.889	Monopterus_albus
ENSORLG00020016909	cirbpa	98	81.461	ENSNBRG00000019658	cirbpa	100	82.703	Neolamprologus_brichardi
ENSORLG00020016909	cirbpa	100	88.202	ENSONIG00000010169	cirbpa	100	82.584	Oreochromis_niloticus
ENSORLG00020016909	cirbpa	100	100.000	ENSORLG00000015433	cirbpa	100	100.000	Oryzias_latipes
ENSORLG00020016909	cirbpa	100	100.000	ENSORLG00015016636	cirbpa	100	100.000	Oryzias_latipes_hsok
ENSORLG00020016909	cirbpa	100	98.276	ENSOMEG00000021469	cirbpa	73	98.276	Oryzias_melastigma
ENSORLG00020016909	cirbpa	99	71.196	ENSPMGG00000017342	cirbpa	95	67.368	Periophthalmus_magnuspinnatus
ENSORLG00020016909	cirbpa	100	80.952	ENSPFOG00000015653	cirbpa	100	85.246	Poecilia_formosa
ENSORLG00020016909	cirbpa	99	81.283	ENSPLAG00000011125	cirbpa	100	85.405	Poecilia_latipinna
ENSORLG00020016909	cirbpa	100	81.383	ENSPMEG00000013878	cirbpa	100	85.484	Poecilia_mexicana
ENSORLG00020016909	cirbpa	99	80.978	ENSPREG00000018042	cirbpa	98	80.435	Poecilia_reticulata
ENSORLG00020016909	cirbpa	98	81.461	ENSPNYG00000007198	-	100	82.703	Pundamilia_nyererei
ENSORLG00020016909	cirbpa	100	55.721	ENSPNAG00000019997	cirbpb	100	52.239	Pygocentrus_nattereri
ENSORLG00020016909	cirbpa	100	58.824	ENSSFOG00015005346	cirbpb	100	63.102	Scleropages_formosus
ENSORLG00020016909	cirbpa	100	66.162	ENSSMAG00000002412	cirbpa	100	67.172	Scophthalmus_maximus
ENSORLG00020016909	cirbpa	100	74.138	ENSSDUG00000016099	cirbpa	100	70.115	Seriola_dumerili
ENSORLG00020016909	cirbpa	57	95.604	ENSSLDG00000011320	cirbpa	54	82.203	Seriola_lalandi_dorsalis
ENSORLG00020016909	cirbpa	100	68.715	ENSSPAG00000023037	cirbpa	99	70.225	Stegastes_partitus
ENSORLG00020016909	cirbpa	100	73.563	ENSTRUG00000010187	cirbpa	100	73.563	Takifugu_rubripes
ENSORLG00020016909	cirbpa	100	76.374	ENSTNIG00000000450	cirbpa	100	75.824	Tetraodon_nigroviridis
ENSORLG00020016909	cirbpa	99	80.978	ENSXCOG00000008262	cirbpa	92	97.260	Xiphophorus_couchianus
ENSORLG00020016909	cirbpa	100	81.622	ENSXMAG00000019336	cirbpa	100	80.000	Xiphophorus_maculatus