EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020016980 (Gene tree)
Gene ID: -
Gene Symbol: cpsf2
Alias: -
Full Name: cleavage and polyadenylation specific factor 2
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 7297 bases
Position: chr24:4486458-4493754
Accession: 101164198
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020031759	Beta-Casp	PF10996.8	1.7e-21	1	1
ENSORLP00020031759	Lactamase_B	PF00753.27	2e-05	1	1
ENSORLP00020031759	RMMBL	PF07521.12	6.6e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020033661	-	2957	-	ENSORLP00020031759	787 (aa)	XP_004083472	H2M7W9

Gene Model

Click here to download ENSORLG00020016980's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020016980's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020016980	cpsf2	100	84.918	ENSG00000165934	CPSF2	100	87.500	Homo_sapiens
ENSORLG00020016980	cpsf2	100	94.409	ENSAPOG00000001242	cpsf2	100	94.409	Acanthochromis_polyacanthus
ENSORLG00020016980	cpsf2	100	94.162	ENSACIG00000009331	cpsf2	100	94.162	Amphilophus_citrinellus
ENSORLG00020016980	cpsf2	100	94.663	ENSAOCG00000014095	cpsf2	100	94.663	Amphiprion_ocellaris
ENSORLG00020016980	cpsf2	100	94.663	ENSAPEG00000009158	cpsf2	100	94.663	Amphiprion_percula
ENSORLG00020016980	cpsf2	96	93.668	ENSATEG00000017644	cpsf2	99	92.617	Anabas_testudineus
ENSORLG00020016980	cpsf2	100	84.430	ENSAPLG00000006330	CPSF2	100	84.430	Anas_platyrhynchos
ENSORLG00020016980	cpsf2	100	84.157	ENSACAG00000009245	CPSF2	100	84.157	Anolis_carolinensis
ENSORLG00020016980	cpsf2	100	85.044	ENSANAG00000022915	CPSF2	100	85.044	Aotus_nancymaae
ENSORLG00020016980	cpsf2	100	89.227	ENSAMXG00000018696	cpsf2	100	89.227	Astyanax_mexicanus
ENSORLG00020016980	cpsf2	100	84.918	ENSBTAG00000010227	CPSF2	100	84.918	Bos_taurus
ENSORLG00020016980	cpsf2	100	42.790	WBGene00017313	cpsf-2	100	42.438	Caenorhabditis_elegans
ENSORLG00020016980	cpsf2	100	85.044	ENSCJAG00000018069	CPSF2	100	85.044	Callithrix_jacchus
ENSORLG00020016980	cpsf2	100	84.791	ENSCAFG00000010909	CPSF2	100	84.791	Canis_familiaris
ENSORLG00020016980	cpsf2	100	84.791	ENSCAFG00020020670	CPSF2	100	84.791	Canis_lupus_dingo
ENSORLG00020016980	cpsf2	100	84.918	ENSCHIG00000023848	CPSF2	100	84.918	Capra_hircus
ENSORLG00020016980	cpsf2	100	84.918	ENSTSYG00000009036	CPSF2	100	84.918	Carlito_syrichta
ENSORLG00020016980	cpsf2	100	84.918	ENSCPOG00000010899	CPSF2	100	84.918	Cavia_porcellus
ENSORLG00020016980	cpsf2	100	85.044	ENSCCAG00000028088	CPSF2	100	85.044	Cebus_capucinus
ENSORLG00020016980	cpsf2	100	84.918	ENSCATG00000030132	CPSF2	100	84.918	Cercocebus_atys
ENSORLG00020016980	cpsf2	100	84.918	ENSCLAG00000012404	CPSF2	100	84.918	Chinchilla_lanigera
ENSORLG00020016980	cpsf2	100	84.918	ENSCSAG00000011300	CPSF2	100	84.918	Chlorocebus_sabaeus
ENSORLG00020016980	cpsf2	100	79.594	ENSCHOG00000012904	CPSF2	100	79.594	Choloepus_hoffmanni
ENSORLG00020016980	cpsf2	100	84.791	ENSCPBG00000008766	CPSF2	97	84.791	Chrysemys_picta_bellii
ENSORLG00020016980	cpsf2	100	53.292	ENSCING00000007881	-	100	52.723	Ciona_intestinalis
ENSORLG00020016980	cpsf2	94	84.865	ENSCANG00000041651	CPSF2	100	84.844	Colobus_angolensis_palliatus
ENSORLG00020016980	cpsf2	100	84.411	ENSCGRG00001006901	Cpsf2	100	84.411	Cricetulus_griseus_chok1gshd
ENSORLG00020016980	cpsf2	100	84.411	ENSCGRG00000012416	Cpsf2	100	84.411	Cricetulus_griseus_crigri
ENSORLG00020016980	cpsf2	100	93.401	ENSCSEG00000004116	cpsf2	100	93.401	Cynoglossus_semilaevis
ENSORLG00020016980	cpsf2	100	94.155	ENSCVAG00000000095	cpsf2	100	94.155	Cyprinodon_variegatus
ENSORLG00020016980	cpsf2	100	87.468	ENSDARG00000028971	cpsf2	100	87.468	Danio_rerio
ENSORLG00020016980	cpsf2	100	84.918	ENSDNOG00000042757	CPSF2	100	84.918	Dasypus_novemcinctus
ENSORLG00020016980	cpsf2	100	84.918	ENSDORG00000013709	Cpsf2	100	84.918	Dipodomys_ordii
ENSORLG00020016980	cpsf2	100	53.646	FBgn0027873	Cpsf100	100	53.532	Drosophila_melanogaster
ENSORLG00020016980	cpsf2	100	77.595	ENSETEG00000012123	CPSF2	100	77.595	Echinops_telfairi
ENSORLG00020016980	cpsf2	52	77.262	ENSEBUG00000012098	cpsf2	93	77.262	Eptatretus_burgeri
ENSORLG00020016980	cpsf2	89	90.102	ENSEASG00005021193	CPSF2	100	90.102	Equus_asinus_asinus
ENSORLG00020016980	cpsf2	100	84.791	ENSECAG00000023935	CPSF2	100	84.791	Equus_caballus
ENSORLG00020016980	cpsf2	100	87.940	ENSELUG00000008442	cpsf2	100	87.940	Esox_lucius
ENSORLG00020016980	cpsf2	100	84.791	ENSFCAG00000007886	CPSF2	100	84.791	Felis_catus
ENSORLG00020016980	cpsf2	100	84.518	ENSFALG00000002412	CPSF2	100	84.518	Ficedula_albicollis
ENSORLG00020016980	cpsf2	100	84.791	ENSFDAG00000006327	CPSF2	100	84.791	Fukomys_damarensis
ENSORLG00020016980	cpsf2	96	92.539	ENSFHEG00000015465	cpsf2	98	93.447	Fundulus_heteroclitus
ENSORLG00020016980	cpsf2	100	89.254	ENSGMOG00000008761	cpsf2	100	89.254	Gadus_morhua
ENSORLG00020016980	cpsf2	100	85.025	ENSGALG00000010783	CPSF2	100	85.025	Gallus_gallus
ENSORLG00020016980	cpsf2	100	94.409	ENSGAFG00000001407	cpsf2	100	94.409	Gambusia_affinis
ENSORLG00020016980	cpsf2	100	93.901	ENSGACG00000008418	cpsf2	100	93.901	Gasterosteus_aculeatus
ENSORLG00020016980	cpsf2	100	84.664	ENSGAGG00000008287	CPSF2	100	84.664	Gopherus_agassizii
ENSORLG00020016980	cpsf2	100	84.918	ENSGGOG00000011799	CPSF2	100	84.918	Gorilla_gorilla
ENSORLG00020016980	cpsf2	100	91.995	ENSHBUG00000023466	cpsf2	100	91.995	Haplochromis_burtoni
ENSORLG00020016980	cpsf2	100	84.918	ENSHGLG00000018311	CPSF2	100	84.918	Heterocephalus_glaber_female
ENSORLG00020016980	cpsf2	100	84.918	ENSHGLG00100016460	CPSF2	100	84.918	Heterocephalus_glaber_male
ENSORLG00020016980	cpsf2	100	92.503	ENSHCOG00000019527	cpsf2	98	92.503	Hippocampus_comes
ENSORLG00020016980	cpsf2	100	89.987	ENSIPUG00000020857	cpsf2	100	89.987	Ictalurus_punctatus
ENSORLG00020016980	cpsf2	100	85.044	ENSSTOG00000009528	CPSF2	100	85.044	Ictidomys_tridecemlineatus
ENSORLG00020016980	cpsf2	100	84.791	ENSJJAG00000017925	Cpsf2	100	84.791	Jaculus_jaculus
ENSORLG00020016980	cpsf2	100	93.393	ENSKMAG00000019429	cpsf2	100	93.393	Kryptolebias_marmoratus
ENSORLG00020016980	cpsf2	95	93.432	ENSLBEG00000011585	cpsf2	100	93.432	Labrus_bergylta
ENSORLG00020016980	cpsf2	100	83.376	ENSLACG00000019024	CPSF2	100	83.671	Latimeria_chalumnae
ENSORLG00020016980	cpsf2	100	88.354	ENSLOCG00000014102	cpsf2	100	88.354	Lepisosteus_oculatus
ENSORLG00020016980	cpsf2	100	84.703	ENSLAFG00000004891	CPSF2	100	84.703	Loxodonta_africana
ENSORLG00020016980	cpsf2	100	84.918	ENSMFAG00000041212	CPSF2	100	84.918	Macaca_fascicularis
ENSORLG00020016980	cpsf2	100	84.918	ENSMMUG00000000699	CPSF2	100	84.918	Macaca_mulatta
ENSORLG00020016980	cpsf2	100	84.918	ENSMNEG00000031584	CPSF2	100	84.918	Macaca_nemestrina
ENSORLG00020016980	cpsf2	100	84.918	ENSMLEG00000029394	CPSF2	100	84.918	Mandrillus_leucophaeus
ENSORLG00020016980	cpsf2	100	94.536	ENSMAMG00000004235	cpsf2	100	94.536	Mastacembelus_armatus
ENSORLG00020016980	cpsf2	100	92.122	ENSMZEG00005001769	cpsf2	100	92.122	Maylandia_zebra
ENSORLG00020016980	cpsf2	100	84.791	ENSMGAG00000013122	CPSF2	100	84.791	Meleagris_gallopavo
ENSORLG00020016980	cpsf2	100	84.537	ENSMAUG00000015160	Cpsf2	100	84.537	Mesocricetus_auratus
ENSORLG00020016980	cpsf2	100	84.918	ENSMICG00000016441	CPSF2	100	84.918	Microcebus_murinus
ENSORLG00020016980	cpsf2	100	84.411	ENSMOCG00000015372	Cpsf2	100	84.411	Microtus_ochrogaster
ENSORLG00020016980	cpsf2	100	88.691	ENSMMOG00000015590	cpsf2	100	88.691	Mola_mola
ENSORLG00020016980	cpsf2	100	85.171	ENSMODG00000002042	CPSF2	100	85.171	Monodelphis_domestica
ENSORLG00020016980	cpsf2	100	90.597	ENSMALG00000022275	cpsf2	100	90.597	Monopterus_albus
ENSORLG00020016980	cpsf2	100	84.411	ENSMUSG00000041781	Cpsf2	100	84.411	Mus_musculus
ENSORLG00020016980	cpsf2	100	84.284	MGP_PahariEiJ_G0029791	Cpsf2	100	84.284	Mus_pahari
ENSORLG00020016980	cpsf2	100	84.411	MGP_SPRETEiJ_G0018877	Cpsf2	100	84.411	Mus_spretus
ENSORLG00020016980	cpsf2	100	84.918	ENSMPUG00000007617	CPSF2	98	84.918	Mustela_putorius_furo
ENSORLG00020016980	cpsf2	100	84.664	ENSMLUG00000005570	CPSF2	100	84.664	Myotis_lucifugus
ENSORLG00020016980	cpsf2	100	84.537	ENSNGAG00000020312	Cpsf2	100	84.537	Nannospalax_galili
ENSORLG00020016980	cpsf2	100	92.503	ENSNBRG00000022402	cpsf2	100	92.503	Neolamprologus_brichardi
ENSORLG00020016980	cpsf2	100	84.157	ENSNLEG00000017132	CPSF2	100	84.157	Nomascus_leucogenys
ENSORLG00020016980	cpsf2	91	92.880	ENSMEUG00000008138	CPSF2	91	92.880	Notamacropus_eugenii
ENSORLG00020016980	cpsf2	94	80.759	ENSOPRG00000008484	-	100	80.759	Ochotona_princeps
ENSORLG00020016980	cpsf2	100	84.664	ENSODEG00000008682	CPSF2	100	84.664	Octodon_degus
ENSORLG00020016980	cpsf2	100	92.503	ENSONIG00000005901	cpsf2	100	92.503	Oreochromis_niloticus
ENSORLG00020016980	cpsf2	100	85.406	ENSOANG00000003822	CPSF2	100	85.406	Ornithorhynchus_anatinus
ENSORLG00020016980	cpsf2	100	84.791	ENSOCUG00000005713	CPSF2	100	84.791	Oryctolagus_cuniculus
ENSORLG00020016980	cpsf2	100	94.155	ENSORLG00000011628	cpsf2	100	94.155	Oryzias_latipes
ENSORLG00020016980	cpsf2	100	100.000	ENSORLG00015011910	cpsf2	100	100.000	Oryzias_latipes_hsok
ENSORLG00020016980	cpsf2	100	97.970	ENSOMEG00000022876	cpsf2	100	97.970	Oryzias_melastigma
ENSORLG00020016980	cpsf2	100	81.922	ENSOARG00000012889	CPSF2	100	81.922	Ovis_aries
ENSORLG00020016980	cpsf2	100	84.918	ENSPPAG00000039666	CPSF2	100	84.918	Pan_paniscus
ENSORLG00020016980	cpsf2	99	84.772	ENSPPRG00000010869	CPSF2	100	84.772	Panthera_pardus
ENSORLG00020016980	cpsf2	100	84.791	ENSPTIG00000021202	CPSF2	100	84.791	Panthera_tigris_altaica
ENSORLG00020016980	cpsf2	100	84.918	ENSPTRG00000006651	CPSF2	100	84.918	Pan_troglodytes
ENSORLG00020016980	cpsf2	100	84.918	ENSPANG00000017417	CPSF2	100	84.918	Papio_anubis
ENSORLG00020016980	cpsf2	100	84.157	ENSPKIG00000021453	cpsf2	100	84.157	Paramormyrops_kingsleyae
ENSORLG00020016980	cpsf2	100	84.284	ENSPSIG00000006289	CPSF2	100	84.284	Pelodiscus_sinensis
ENSORLG00020016980	cpsf2	76	87.667	ENSPMGG00000002511	cpsf2	99	87.667	Periophthalmus_magnuspinnatus
ENSORLG00020016980	cpsf2	100	84.537	ENSPEMG00000007917	Cpsf2	100	84.537	Peromyscus_maniculatus_bairdii
ENSORLG00020016980	cpsf2	100	72.647	ENSPMAG00000006205	cpsf2	100	73.034	Petromyzon_marinus
ENSORLG00020016980	cpsf2	100	85.171	ENSPCIG00000011393	CPSF2	100	85.171	Phascolarctos_cinereus
ENSORLG00020016980	cpsf2	100	94.663	ENSPFOG00000018648	cpsf2	100	94.663	Poecilia_formosa
ENSORLG00020016980	cpsf2	100	94.663	ENSPLAG00000019199	cpsf2	99	94.663	Poecilia_latipinna
ENSORLG00020016980	cpsf2	96	94.591	ENSPMEG00000012100	cpsf2	100	94.638	Poecilia_mexicana
ENSORLG00020016980	cpsf2	100	94.409	ENSPREG00000008960	cpsf2	100	94.409	Poecilia_reticulata
ENSORLG00020016980	cpsf2	64	80.716	ENSPPYG00000029685	-	100	80.716	Pongo_abelii
ENSORLG00020016980	cpsf2	100	84.918	ENSPCAG00000012477	CPSF2	100	84.918	Procavia_capensis
ENSORLG00020016980	cpsf2	100	84.918	ENSPCOG00000026387	CPSF2	100	84.918	Propithecus_coquereli
ENSORLG00020016980	cpsf2	64	90.306	ENSPVAG00000004223	CPSF2	65	90.306	Pteropus_vampyrus
ENSORLG00020016980	cpsf2	100	91.878	ENSPNYG00000023356	cpsf2	100	91.878	Pundamilia_nyererei
ENSORLG00020016980	cpsf2	100	90.368	ENSPNAG00000001849	cpsf2	100	90.368	Pygocentrus_nattereri
ENSORLG00020016980	cpsf2	100	84.411	ENSRNOG00000005733	Cpsf2	100	84.411	Rattus_norvegicus
ENSORLG00020016980	cpsf2	100	84.918	ENSRBIG00000044792	CPSF2	100	84.918	Rhinopithecus_bieti
ENSORLG00020016980	cpsf2	100	84.918	ENSRROG00000034875	CPSF2	100	84.918	Rhinopithecus_roxellana
ENSORLG00020016980	cpsf2	100	85.044	ENSSBOG00000024571	CPSF2	100	85.044	Saimiri_boliviensis_boliviensis
ENSORLG00020016980	cpsf2	100	85.171	ENSSHAG00000010458	CPSF2	100	85.171	Sarcophilus_harrisii
ENSORLG00020016980	cpsf2	100	90.241	ENSSFOG00015002117	cpsf2	100	90.114	Scleropages_formosus
ENSORLG00020016980	cpsf2	100	92.640	ENSSMAG00000002001	cpsf2	100	93.020	Scophthalmus_maximus
ENSORLG00020016980	cpsf2	100	94.536	ENSSDUG00000004084	cpsf2	100	94.536	Seriola_dumerili
ENSORLG00020016980	cpsf2	100	94.028	ENSSLDG00000024330	cpsf2	100	94.028	Seriola_lalandi_dorsalis
ENSORLG00020016980	cpsf2	58	93.069	ENSSARG00000009784	-	63	93.069	Sorex_araneus
ENSORLG00020016980	cpsf2	100	84.537	ENSSPUG00000013485	CPSF2	100	84.537	Sphenodon_punctatus
ENSORLG00020016980	cpsf2	100	94.917	ENSSPAG00000013284	cpsf2	100	94.917	Stegastes_partitus
ENSORLG00020016980	cpsf2	100	84.791	ENSSSCG00000002447	CPSF2	100	84.791	Sus_scrofa
ENSORLG00020016980	cpsf2	100	84.645	ENSTGUG00000012571	-	100	84.645	Taeniopygia_guttata
ENSORLG00020016980	cpsf2	100	93.139	ENSTRUG00000003742	cpsf2	100	93.139	Takifugu_rubripes
ENSORLG00020016980	cpsf2	100	92.015	ENSTNIG00000012228	cpsf2	100	93.029	Tetraodon_nigroviridis
ENSORLG00020016980	cpsf2	91	82.583	ENSTBEG00000004530	CPSF2	94	82.583	Tupaia_belangeri
ENSORLG00020016980	cpsf2	88	87.500	ENSTTRG00000008697	CPSF2	88	87.500	Tursiops_truncatus
ENSORLG00020016980	cpsf2	100	84.918	ENSUAMG00000028071	CPSF2	100	84.918	Ursus_americanus
ENSORLG00020016980	cpsf2	100	84.918	ENSUMAG00000005029	CPSF2	99	90.097	Ursus_maritimus
ENSORLG00020016980	cpsf2	99	84.772	ENSVPAG00000003503	CPSF2	100	84.772	Vicugna_pacos
ENSORLG00020016980	cpsf2	100	84.791	ENSVVUG00000024642	CPSF2	100	84.791	Vulpes_vulpes
ENSORLG00020016980	cpsf2	100	84.030	ENSXETG00000010289	cpsf2	100	84.030	Xenopus_tropicalis
ENSORLG00020016980	cpsf2	100	94.155	ENSXCOG00000001764	cpsf2	100	94.155	Xiphophorus_couchianus
ENSORLG00020016980	cpsf2	100	94.663	ENSXMAG00000017048	cpsf2	100	94.663	Xiphophorus_maculatus