EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020017069 (Gene tree)
Gene ID: -
Gene Symbol: r3hdm2
Alias: -
Full Name: R3H domain containing 2
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 28420 bases
Position: chr5:10714957-10743376
Accession: ZDB-GENE-180313-1
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020015910	R3H	PF01424.22	8.7e-11	1	1
ENSORLP00020015934	R3H	PF01424.22	8.9e-11	1	1
ENSORLP00020016011	R3H	PF01424.22	9.2e-11	1	1
ENSORLP00020015972	R3H	PF01424.22	9.6e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020033645	-	2862	-	ENSORLP00020015910	953 (aa)	-	-
ENSORLT00020024186	-	6790	-	ENSORLP00020016011	1069 (aa)	-	-
ENSORLT00020024115	-	6691	-	ENSORLP00020015934	1036 (aa)	-	-
ENSORLT00020033679	-	6736	-	ENSORLP00020015972	1051 (aa)	-	-

Gene Model

Click here to download ENSORLG00020017069's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020017069's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020017069	r3hdm2	52	36.088	ENSORLG00020019613	-	66	36.567

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020017069	r3hdm2	99	64.149	ENSG00000179912	R3HDM2	89	80.556	Homo_sapiens
ENSORLG00020017069	r3hdm2	100	90.111	ENSAPOG00000020341	r3hdm2	100	90.657	Acanthochromis_polyacanthus
ENSORLG00020017069	r3hdm2	95	66.763	ENSAMEG00000004812	R3HDM2	99	64.543	Ailuropoda_melanoleuca
ENSORLG00020017069	r3hdm2	94	92.000	ENSACIG00000016146	r3hdm2	98	90.656	Amphilophus_citrinellus
ENSORLG00020017069	r3hdm2	100	90.320	ENSAOCG00000023694	r3hdm2	100	90.875	Amphiprion_ocellaris
ENSORLG00020017069	r3hdm2	100	90.414	ENSAPEG00000008851	r3hdm2	100	90.969	Amphiprion_percula
ENSORLG00020017069	r3hdm2	100	87.536	ENSATEG00000025024	r3hdm2	99	88.663	Anabas_testudineus
ENSORLG00020017069	r3hdm2	100	56.968	ENSAPLG00000004298	R3HDM2	93	70.208	Anas_platyrhynchos
ENSORLG00020017069	r3hdm2	99	61.905	ENSACAG00000006388	R3HDM2	99	60.112	Anolis_carolinensis
ENSORLG00020017069	r3hdm2	98	61.331	ENSANAG00000031310	-	99	59.429	Aotus_nancymaae
ENSORLG00020017069	r3hdm2	99	64.054	ENSANAG00000025397	-	99	63.133	Aotus_nancymaae
ENSORLG00020017069	r3hdm2	100	90.113	ENSACLG00000019106	r3hdm2	100	89.915	Astatotilapia_calliptera
ENSORLG00020017069	r3hdm2	94	69.616	ENSAMXG00000017180	r3hdm2	99	71.170	Astyanax_mexicanus
ENSORLG00020017069	r3hdm2	99	63.854	ENSBTAG00000018361	R3HDM2	99	63.027	Bos_taurus
ENSORLG00020017069	r3hdm2	99	63.590	ENSCJAG00000007365	R3HDM2	99	63.062	Callithrix_jacchus
ENSORLG00020017069	r3hdm2	99	63.732	ENSCAFG00000000215	R3HDM2	99	63.576	Canis_familiaris
ENSORLG00020017069	r3hdm2	99	65.056	ENSCAFG00020023713	R3HDM2	99	65.367	Canis_lupus_dingo
ENSORLG00020017069	r3hdm2	95	66.798	ENSCHIG00000014022	R3HDM2	99	64.756	Capra_hircus
ENSORLG00020017069	r3hdm2	99	63.480	ENSTSYG00000001449	R3HDM2	99	63.412	Carlito_syrichta
ENSORLG00020017069	r3hdm2	95	67.570	ENSCPOG00000009217	R3HDM2	99	64.531	Cavia_porcellus
ENSORLG00020017069	r3hdm2	87	64.355	ENSCCAG00000026083	R3HDM2	99	63.656	Cebus_capucinus
ENSORLG00020017069	r3hdm2	99	64.944	ENSCATG00000036929	R3HDM2	99	64.507	Cercocebus_atys
ENSORLG00020017069	r3hdm2	95	67.021	ENSCLAG00000011997	R3HDM2	99	64.750	Chinchilla_lanigera
ENSORLG00020017069	r3hdm2	99	65.323	ENSCSAG00000004911	R3HDM2	99	65.258	Chlorocebus_sabaeus
ENSORLG00020017069	r3hdm2	74	66.467	ENSCHOG00000005636	R3HDM2	89	66.335	Choloepus_hoffmanni
ENSORLG00020017069	r3hdm2	99	63.554	ENSCPBG00000013922	R3HDM2	99	62.770	Chrysemys_picta_bellii
ENSORLG00020017069	r3hdm2	99	64.546	ENSCANG00000043807	R3HDM2	99	64.413	Colobus_angolensis_palliatus
ENSORLG00020017069	r3hdm2	99	63.284	ENSCGRG00001017324	R3hdm2	99	61.931	Cricetulus_griseus_chok1gshd
ENSORLG00020017069	r3hdm2	99	63.284	ENSCGRG00000003862	R3hdm2	99	61.931	Cricetulus_griseus_crigri
ENSORLG00020017069	r3hdm2	100	89.319	ENSCSEG00000010925	r3hdm2	99	90.432	Cynoglossus_semilaevis
ENSORLG00020017069	r3hdm2	100	89.005	ENSCVAG00000009058	r3hdm2	100	88.720	Cyprinodon_variegatus
ENSORLG00020017069	r3hdm2	94	71.585	ENSDARG00000102610	r3hdm2	99	73.207	Danio_rerio
ENSORLG00020017069	r3hdm2	99	64.855	ENSDNOG00000015033	R3HDM2	100	65.550	Dasypus_novemcinctus
ENSORLG00020017069	r3hdm2	95	64.506	ENSDORG00000011462	R3hdm2	98	63.347	Dipodomys_ordii
ENSORLG00020017069	r3hdm2	95	67.183	ENSEASG00005007091	R3HDM2	99	63.927	Equus_asinus_asinus
ENSORLG00020017069	r3hdm2	99	65.157	ENSECAG00000003157	R3HDM2	99	64.935	Equus_caballus
ENSORLG00020017069	r3hdm2	100	78.315	ENSELUG00000015969	r3hdm2	100	78.584	Esox_lucius
ENSORLG00020017069	r3hdm2	99	65.213	ENSFCAG00000000192	R3HDM2	98	64.678	Felis_catus
ENSORLG00020017069	r3hdm2	81	62.955	ENSFALG00000000255	R3HDM2	99	59.935	Ficedula_albicollis
ENSORLG00020017069	r3hdm2	99	64.630	ENSFDAG00000019385	R3HDM2	99	64.722	Fukomys_damarensis
ENSORLG00020017069	r3hdm2	100	89.972	ENSFHEG00000016484	r3hdm2	100	89.593	Fundulus_heteroclitus
ENSORLG00020017069	r3hdm2	95	82.111	ENSGMOG00000007961	r3hdm2	100	82.829	Gadus_morhua
ENSORLG00020017069	r3hdm2	99	63.832	ENSGALG00000043736	R3HDM2	99	62.973	Gallus_gallus
ENSORLG00020017069	r3hdm2	100	90.427	ENSGAFG00000013887	r3hdm2	100	90.019	Gambusia_affinis
ENSORLG00020017069	r3hdm2	95	88.086	ENSGACG00000006442	r3hdm2	100	88.184	Gasterosteus_aculeatus
ENSORLG00020017069	r3hdm2	99	63.043	ENSGAGG00000017797	R3HDM2	99	62.002	Gopherus_agassizii
ENSORLG00020017069	r3hdm2	99	64.944	ENSGGOG00000015007	R3HDM2	99	64.480	Gorilla_gorilla
ENSORLG00020017069	r3hdm2	89	60.990	ENSHGLG00000010421	-	97	58.486	Heterocephalus_glaber_female
ENSORLG00020017069	r3hdm2	99	65.213	ENSHGLG00000010434	-	99	64.903	Heterocephalus_glaber_female
ENSORLG00020017069	r3hdm2	93	58.684	ENSHGLG00100018871	-	96	57.113	Heterocephalus_glaber_male
ENSORLG00020017069	r3hdm2	99	65.121	ENSHGLG00100004183	-	99	64.810	Heterocephalus_glaber_male
ENSORLG00020017069	r3hdm2	100	86.723	ENSHCOG00000001142	r3hdm2	97	87.726	Hippocampus_comes
ENSORLG00020017069	r3hdm2	100	74.747	ENSIPUG00000023873	r3hdm2	100	74.378	Ictalurus_punctatus
ENSORLG00020017069	r3hdm2	99	61.398	ENSSTOG00000013424	R3HDM2	99	60.321	Ictidomys_tridecemlineatus
ENSORLG00020017069	r3hdm2	99	64.624	ENSJJAG00000010001	R3hdm2	99	64.160	Jaculus_jaculus
ENSORLG00020017069	r3hdm2	100	90.255	ENSKMAG00000012695	r3hdm2	97	89.867	Kryptolebias_marmoratus
ENSORLG00020017069	r3hdm2	100	89.963	ENSLBEG00000013115	r3hdm2	96	89.870	Labrus_bergylta
ENSORLG00020017069	r3hdm2	95	65.988	ENSLACG00000019064	r3hdm2	100	65.019	Latimeria_chalumnae
ENSORLG00020017069	r3hdm2	99	72.849	ENSLOCG00000005976	r3hdm2	99	72.521	Lepisosteus_oculatus
ENSORLG00020017069	r3hdm2	99	65.395	ENSLAFG00000006510	R3HDM2	99	65.302	Loxodonta_africana
ENSORLG00020017069	r3hdm2	99	64.944	ENSMFAG00000036385	R3HDM2	99	64.695	Macaca_fascicularis
ENSORLG00020017069	r3hdm2	99	65.463	ENSMMUG00000021789	R3HDM2	99	65.246	Macaca_mulatta
ENSORLG00020017069	r3hdm2	99	65.070	ENSMNEG00000025314	R3HDM2	99	64.883	Macaca_nemestrina
ENSORLG00020017069	r3hdm2	99	65.038	ENSMLEG00000028915	R3HDM2	99	64.601	Mandrillus_leucophaeus
ENSORLG00020017069	r3hdm2	100	91.423	ENSMAMG00000009793	r3hdm2	100	91.777	Mastacembelus_armatus
ENSORLG00020017069	r3hdm2	100	89.548	ENSMZEG00005007319	r3hdm2	100	89.350	Maylandia_zebra
ENSORLG00020017069	r3hdm2	99	63.515	ENSMICG00000012389	R3HDM2	99	63.133	Microcebus_murinus
ENSORLG00020017069	r3hdm2	99	64.015	ENSMOCG00000014425	R3hdm2	99	63.066	Microtus_ochrogaster
ENSORLG00020017069	r3hdm2	95	84.530	ENSMMOG00000007448	r3hdm2	98	85.237	Mola_mola
ENSORLG00020017069	r3hdm2	91	82.556	ENSMALG00000010211	r3hdm2	98	85.429	Monopterus_albus
ENSORLG00020017069	r3hdm2	99	64.564	MGP_CAROLIEiJ_G0015896	R3hdm2	99	63.915	Mus_caroli
ENSORLG00020017069	r3hdm2	99	64.717	ENSMUSG00000025404	R3hdm2	99	64.253	Mus_musculus
ENSORLG00020017069	r3hdm2	95	65.988	MGP_PahariEiJ_G0031189	R3hdm2	99	63.704	Mus_pahari
ENSORLG00020017069	r3hdm2	99	64.690	MGP_SPRETEiJ_G0016722	R3hdm2	99	64.226	Mus_spretus
ENSORLG00020017069	r3hdm2	94	66.275	ENSMPUG00000001818	R3HDM2	96	63.918	Mustela_putorius_furo
ENSORLG00020017069	r3hdm2	99	65.616	ENSMLUG00000004980	R3HDM2	99	64.782	Myotis_lucifugus
ENSORLG00020017069	r3hdm2	99	64.576	ENSNGAG00000018800	R3hdm2	99	64.444	Nannospalax_galili
ENSORLG00020017069	r3hdm2	94	90.355	ENSNBRG00000004483	r3hdm2	99	90.244	Neolamprologus_brichardi
ENSORLG00020017069	r3hdm2	99	65.132	ENSNLEG00000017351	R3HDM2	99	64.695	Nomascus_leucogenys
ENSORLG00020017069	r3hdm2	99	56.244	ENSMEUG00000008588	R3HDM2	99	55.453	Notamacropus_eugenii
ENSORLG00020017069	r3hdm2	99	59.798	ENSOPRG00000013670	R3HDM2	99	57.994	Ochotona_princeps
ENSORLG00020017069	r3hdm2	100	87.007	ENSONIG00000005075	r3hdm2	100	86.141	Oreochromis_niloticus
ENSORLG00020017069	r3hdm2	99	64.945	ENSOCUG00000013258	R3HDM2	99	63.488	Oryctolagus_cuniculus
ENSORLG00020017069	r3hdm2	100	99.626	ENSORLG00000005502	r3hdm2	100	99.626	Oryzias_latipes
ENSORLG00020017069	r3hdm2	54	35.577	ENSORLG00000011606	-	74	37.127	Oryzias_latipes
ENSORLG00020017069	r3hdm2	100	99.906	ENSORLG00015012735	r3hdm2	100	99.906	Oryzias_latipes_hsok
ENSORLG00020017069	r3hdm2	100	91.531	ENSOMEG00000018079	r3hdm2	100	91.812	Oryzias_melastigma
ENSORLG00020017069	r3hdm2	96	56.673	ENSOGAG00000027966	-	99	55.124	Otolemur_garnettii
ENSORLG00020017069	r3hdm2	99	62.338	ENSOGAG00000012055	R3HDM2	99	62.371	Otolemur_garnettii
ENSORLG00020017069	r3hdm2	99	63.463	ENSOARG00000006929	R3HDM2	99	62.124	Ovis_aries
ENSORLG00020017069	r3hdm2	99	65.103	ENSPPAG00000034395	R3HDM2	99	64.695	Pan_paniscus
ENSORLG00020017069	r3hdm2	99	62.338	ENSPPRG00000009240	R3HDM2	99	63.046	Panthera_pardus
ENSORLG00020017069	r3hdm2	99	62.338	ENSPTIG00000008752	R3HDM2	99	63.046	Panthera_tigris_altaica
ENSORLG00020017069	r3hdm2	99	65.009	ENSPTRG00000046457	R3HDM2	99	64.789	Pan_troglodytes
ENSORLG00020017069	r3hdm2	94	67.104	ENSPANG00000024002	R3HDM2	97	64.700	Papio_anubis
ENSORLG00020017069	r3hdm2	100	78.908	ENSPKIG00000003171	r3hdm2	100	79.284	Paramormyrops_kingsleyae
ENSORLG00020017069	r3hdm2	64	55.572	ENSPSIG00000006954	R3HDM2	99	55.275	Pelodiscus_sinensis
ENSORLG00020017069	r3hdm2	94	87.168	ENSPMGG00000007061	r3hdm2	99	87.182	Periophthalmus_magnuspinnatus
ENSORLG00020017069	r3hdm2	99	64.107	ENSPEMG00000015964	R3hdm2	99	63.148	Peromyscus_maniculatus_bairdii
ENSORLG00020017069	r3hdm2	99	63.168	ENSPCIG00000023841	R3HDM2	99	61.868	Phascolarctos_cinereus
ENSORLG00020017069	r3hdm2	94	95.211	ENSPFOG00000006077	r3hdm2	92	95.211	Poecilia_formosa
ENSORLG00020017069	r3hdm2	100	90.806	ENSPLAG00000002971	r3hdm2	100	90.521	Poecilia_latipinna
ENSORLG00020017069	r3hdm2	100	90.806	ENSPMEG00000005330	r3hdm2	100	90.521	Poecilia_mexicana
ENSORLG00020017069	r3hdm2	100	90.332	ENSPREG00000008424	r3hdm2	100	90.047	Poecilia_reticulata
ENSORLG00020017069	r3hdm2	97	60.235	ENSPPYG00000004685	R3HDM2	80	58.229	Pongo_abelii
ENSORLG00020017069	r3hdm2	88	79.859	ENSPCAG00000014642	R3HDM2	92	80.919	Procavia_capensis
ENSORLG00020017069	r3hdm2	99	63.758	ENSPCOG00000013201	R3HDM2	99	62.338	Propithecus_coquereli
ENSORLG00020017069	r3hdm2	99	65.274	ENSPVAG00000003967	R3HDM2	99	63.728	Pteropus_vampyrus
ENSORLG00020017069	r3hdm2	94	83.299	ENSPNYG00000013479	r3hdm2	100	82.587	Pundamilia_nyererei
ENSORLG00020017069	r3hdm2	100	74.366	ENSPNAG00000017473	r3hdm2	100	75.815	Pygocentrus_nattereri
ENSORLG00020017069	r3hdm2	95	65.507	ENSRNOG00000007801	R3hdm2	99	63.216	Rattus_norvegicus
ENSORLG00020017069	r3hdm2	99	62.165	ENSRBIG00000037403	R3HDM2	99	60.432	Rhinopithecus_bieti
ENSORLG00020017069	r3hdm2	99	65.584	ENSRROG00000022271	R3HDM2	99	64.601	Rhinopithecus_roxellana
ENSORLG00020017069	r3hdm2	99	63.749	ENSSBOG00000023547	R3HDM2	99	63.133	Saimiri_boliviensis_boliviensis
ENSORLG00020017069	r3hdm2	99	61.700	ENSSHAG00000003511	R3HDM2	99	62.798	Sarcophilus_harrisii
ENSORLG00020017069	r3hdm2	94	77.350	ENSSFOG00015011219	r3hdm2	99	76.768	Scleropages_formosus
ENSORLG00020017069	r3hdm2	100	89.194	ENSSMAG00000012073	r3hdm2	100	89.005	Scophthalmus_maximus
ENSORLG00020017069	r3hdm2	100	89.934	ENSSDUG00000019269	r3hdm2	100	90.472	Seriola_dumerili
ENSORLG00020017069	r3hdm2	100	89.821	ENSSLDG00000005252	r3hdm2	100	90.265	Seriola_lalandi_dorsalis
ENSORLG00020017069	r3hdm2	90	60.816	ENSSARG00000003958	R3HDM2	94	58.681	Sorex_araneus
ENSORLG00020017069	r3hdm2	95	62.524	ENSSPUG00000014132	R3HDM2	99	59.294	Sphenodon_punctatus
ENSORLG00020017069	r3hdm2	100	89.652	ENSSPAG00000022594	r3hdm2	100	90.499	Stegastes_partitus
ENSORLG00020017069	r3hdm2	99	63.966	ENSSSCG00000026498	R3HDM2	100	65.284	Sus_scrofa
ENSORLG00020017069	r3hdm2	72	63.371	ENSTGUG00000015881	R3HDM2	99	62.516	Taeniopygia_guttata
ENSORLG00020017069	r3hdm2	94	87.199	ENSTRUG00000015075	r3hdm2	98	87.418	Takifugu_rubripes
ENSORLG00020017069	r3hdm2	91	95.068	ENSTNIG00000007057	r3hdm2	89	95.068	Tetraodon_nigroviridis
ENSORLG00020017069	r3hdm2	82	64.706	ENSTBEG00000015967	R3HDM2	78	64.706	Tupaia_belangeri
ENSORLG00020017069	r3hdm2	99	56.041	ENSTTRG00000013082	R3HDM2	94	62.567	Tursiops_truncatus
ENSORLG00020017069	r3hdm2	95	67.160	ENSUAMG00000020913	R3HDM2	99	64.878	Ursus_americanus
ENSORLG00020017069	r3hdm2	91	66.591	ENSUMAG00000019179	R3HDM2	96	64.442	Ursus_maritimus
ENSORLG00020017069	r3hdm2	90	80.456	ENSVPAG00000008656	R3HDM2	91	76.636	Vicugna_pacos
ENSORLG00020017069	r3hdm2	97	64.986	ENSVVUG00000018014	R3HDM2	95	64.706	Vulpes_vulpes
ENSORLG00020017069	r3hdm2	99	61.759	ENSXETG00000017153	r3hdm2	99	59.447	Xenopus_tropicalis
ENSORLG00020017069	r3hdm2	87	90.000	ENSXCOG00000013882	r3hdm2	100	90.000	Xiphophorus_couchianus
ENSORLG00020017069	r3hdm2	100	90.616	ENSXMAG00000017978	r3hdm2	100	90.308	Xiphophorus_maculatus