EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020017383 (Gene tree)
Gene ID: -
Gene Symbol: lsm6
Alias: -
Full Name: LSM6 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 4370 bases
Position: chr1:17465992-17470361
Accession: 101156227
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020016358	LSM	PF01423.22	1.8e-18	1	1
ENSORLP00020032039	LSM	PF01423.22	2.1e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020024605	-	3935	-	ENSORLP00020032039	81 (aa)	-	-
ENSORLT00020024609	-	865	-	ENSORLP00020016358	80 (aa)	XP_023813386	H2LT61

Gene Model

Click here to download ENSORLG00020017383's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020017383's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020017383	lsm6	83	50.000	ENSORLG00020008216	snrpf	77	48.485

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020017383	lsm6	100	93.750	ENSG00000164167	LSM6	100	93.750	Homo_sapiens
ENSORLG00020017383	lsm6	100	98.750	ENSAPOG00000019832	lsm6	100	98.750	Acanthochromis_polyacanthus
ENSORLG00020017383	lsm6	100	93.750	ENSAMEG00000016671	LSM6	100	93.750	Ailuropoda_melanoleuca
ENSORLG00020017383	lsm6	100	98.750	ENSACIG00000016711	lsm6	100	98.750	Amphilophus_citrinellus
ENSORLG00020017383	lsm6	100	98.750	ENSAOCG00000002110	lsm6	52	98.750	Amphiprion_ocellaris
ENSORLG00020017383	lsm6	100	98.750	ENSAPEG00000023992	lsm6	100	98.750	Amphiprion_percula
ENSORLG00020017383	lsm6	100	98.750	ENSATEG00000012610	lsm6	100	98.750	Anabas_testudineus
ENSORLG00020017383	lsm6	96	94.805	ENSAPLG00000012594	LSM6	99	94.805	Anas_platyrhynchos
ENSORLG00020017383	lsm6	100	93.750	ENSACAG00000004004	LSM6	100	93.750	Anolis_carolinensis
ENSORLG00020017383	lsm6	100	81.250	ENSANAG00000021839	-	100	81.250	Aotus_nancymaae
ENSORLG00020017383	lsm6	100	93.750	ENSANAG00000030568	-	100	93.750	Aotus_nancymaae
ENSORLG00020017383	lsm6	100	98.750	ENSACLG00000025621	lsm6	100	98.750	Astatotilapia_calliptera
ENSORLG00020017383	lsm6	100	96.250	ENSAMXG00000038738	lsm6	100	96.250	Astyanax_mexicanus
ENSORLG00020017383	lsm6	100	93.750	ENSBTAG00000014060	LSM6	100	93.750	Bos_taurus
ENSORLG00020017383	lsm6	100	87.500	ENSBTAG00000052085	-	100	87.500	Bos_taurus
ENSORLG00020017383	lsm6	94	78.667	WBGene00003080	lsm-6	97	78.667	Caenorhabditis_elegans
ENSORLG00020017383	lsm6	100	93.750	ENSCJAG00000002482	LSM6	100	93.750	Callithrix_jacchus
ENSORLG00020017383	lsm6	100	93.750	ENSCAFG00000007738	LSM6	100	93.750	Canis_familiaris
ENSORLG00020017383	lsm6	100	93.750	ENSCAFG00020025902	LSM6	100	93.750	Canis_lupus_dingo
ENSORLG00020017383	lsm6	100	78.750	ENSCHIG00000024198	-	95	78.750	Capra_hircus
ENSORLG00020017383	lsm6	89	95.775	ENSCHIG00000012864	-	100	95.775	Capra_hircus
ENSORLG00020017383	lsm6	100	93.750	ENSCHIG00000010334	-	100	93.750	Capra_hircus
ENSORLG00020017383	lsm6	80	89.062	ENSTSYG00000012759	-	91	84.058	Carlito_syrichta
ENSORLG00020017383	lsm6	100	93.750	ENSTSYG00000026972	LSM6	100	93.750	Carlito_syrichta
ENSORLG00020017383	lsm6	100	93.750	ENSCAPG00000008104	LSM6	100	93.750	Cavia_aperea
ENSORLG00020017383	lsm6	81	92.308	ENSCAPG00000011179	-	100	92.308	Cavia_aperea
ENSORLG00020017383	lsm6	100	93.750	ENSCPOG00000032655	LSM6	100	93.750	Cavia_porcellus
ENSORLG00020017383	lsm6	99	93.671	ENSCCAG00000020665	-	99	93.671	Cebus_capucinus
ENSORLG00020017383	lsm6	100	93.750	ENSCCAG00000036437	LSM6	100	93.750	Cebus_capucinus
ENSORLG00020017383	lsm6	100	71.250	ENSCATG00000038799	-	100	71.250	Cercocebus_atys
ENSORLG00020017383	lsm6	100	93.750	ENSCATG00000002770	-	100	93.750	Cercocebus_atys
ENSORLG00020017383	lsm6	100	93.750	ENSCLAG00000005495	LSM6	100	93.750	Chinchilla_lanigera
ENSORLG00020017383	lsm6	89	77.465	ENSCLAG00000005685	-	100	77.465	Chinchilla_lanigera
ENSORLG00020017383	lsm6	100	93.750	ENSCSAG00000003421	LSM6	100	93.750	Chlorocebus_sabaeus
ENSORLG00020017383	lsm6	100	73.750	ENSCHOG00000003420	LSM6	84	96.226	Choloepus_hoffmanni
ENSORLG00020017383	lsm6	100	93.750	ENSCPBG00000027472	LSM6	84	93.750	Chrysemys_picta_bellii
ENSORLG00020017383	lsm6	95	94.737	ENSCING00000019152	-	93	94.737	Ciona_intestinalis
ENSORLG00020017383	lsm6	95	96.053	ENSCSAVG00000002065	-	93	96.053	Ciona_savignyi
ENSORLG00020017383	lsm6	100	93.750	ENSCANG00000041263	-	100	93.750	Colobus_angolensis_palliatus
ENSORLG00020017383	lsm6	100	93.750	ENSCANG00000006849	-	100	93.750	Colobus_angolensis_palliatus
ENSORLG00020017383	lsm6	100	67.500	ENSCANG00000035214	-	100	67.500	Colobus_angolensis_palliatus
ENSORLG00020017383	lsm6	100	93.750	ENSCGRG00001017142	Lsm6	100	93.750	Cricetulus_griseus_chok1gshd
ENSORLG00020017383	lsm6	100	93.750	ENSCGRG00000008320	Lsm6	100	93.750	Cricetulus_griseus_crigri
ENSORLG00020017383	lsm6	100	98.750	ENSCSEG00000000423	lsm6	100	98.750	Cynoglossus_semilaevis
ENSORLG00020017383	lsm6	100	98.750	ENSCVAG00000001592	lsm6	100	98.750	Cyprinodon_variegatus
ENSORLG00020017383	lsm6	100	96.250	ENSDARG00000036995	lsm6	100	96.250	Danio_rerio
ENSORLG00020017383	lsm6	98	86.250	ENSDNOG00000040186	-	86	86.250	Dasypus_novemcinctus
ENSORLG00020017383	lsm6	100	92.500	ENSDNOG00000044848	-	100	92.500	Dasypus_novemcinctus
ENSORLG00020017383	lsm6	100	93.750	ENSDORG00000000933	Lsm6	100	93.750	Dipodomys_ordii
ENSORLG00020017383	lsm6	96	83.117	FBgn0034564	CG9344	97	83.117	Drosophila_melanogaster
ENSORLG00020017383	lsm6	60	91.667	ENSETEG00000013098	LSM6	100	91.667	Echinops_telfairi
ENSORLG00020017383	lsm6	100	95.000	ENSEBUG00000017073	lsm6	100	95.000	Eptatretus_burgeri
ENSORLG00020017383	lsm6	100	85.185	ENSEASG00005001533	LSM6	84	85.185	Equus_asinus_asinus
ENSORLG00020017383	lsm6	100	93.750	ENSECAG00000021036	LSM6	100	93.750	Equus_caballus
ENSORLG00020017383	lsm6	99	65.823	ENSEEUG00000002101	LSM6	100	65.823	Erinaceus_europaeus
ENSORLG00020017383	lsm6	100	96.250	ENSELUG00000014301	LSM6	100	96.250	Esox_lucius
ENSORLG00020017383	lsm6	100	93.750	ENSFCAG00000003047	LSM6	100	93.750	Felis_catus
ENSORLG00020017383	lsm6	100	93.750	ENSFALG00000005509	LSM6	92	93.750	Ficedula_albicollis
ENSORLG00020017383	lsm6	100	93.750	ENSFDAG00000020913	-	100	93.750	Fukomys_damarensis
ENSORLG00020017383	lsm6	100	83.750	ENSFDAG00000019073	-	100	83.750	Fukomys_damarensis
ENSORLG00020017383	lsm6	100	98.750	ENSFHEG00000007948	lsm6	100	98.750	Fundulus_heteroclitus
ENSORLG00020017383	lsm6	100	98.750	ENSGMOG00000015550	lsm6	100	98.750	Gadus_morhua
ENSORLG00020017383	lsm6	100	93.750	ENSGALG00000009985	LSM6	100	93.750	Gallus_gallus
ENSORLG00020017383	lsm6	100	98.750	ENSGAFG00000017763	lsm6	100	98.750	Gambusia_affinis
ENSORLG00020017383	lsm6	100	97.500	ENSGACG00000017223	lsm6	100	97.500	Gasterosteus_aculeatus
ENSORLG00020017383	lsm6	100	93.750	ENSGAGG00000020980	LSM6	100	93.750	Gopherus_agassizii
ENSORLG00020017383	lsm6	100	93.750	ENSGGOG00000001310	LSM6	100	93.750	Gorilla_gorilla
ENSORLG00020017383	lsm6	100	98.750	ENSHBUG00000008618	lsm6	100	98.750	Haplochromis_burtoni
ENSORLG00020017383	lsm6	100	93.750	ENSHGLG00000000205	LSM6	100	93.750	Heterocephalus_glaber_female
ENSORLG00020017383	lsm6	100	93.750	ENSHGLG00100014341	LSM6	100	93.750	Heterocephalus_glaber_male
ENSORLG00020017383	lsm6	100	97.500	ENSHCOG00000005591	lsm6	100	97.500	Hippocampus_comes
ENSORLG00020017383	lsm6	100	96.250	ENSIPUG00000004508	lsm6	100	96.250	Ictalurus_punctatus
ENSORLG00020017383	lsm6	100	93.750	ENSSTOG00000002678	LSM6	100	93.750	Ictidomys_tridecemlineatus
ENSORLG00020017383	lsm6	100	83.750	ENSJJAG00000011211	-	100	83.750	Jaculus_jaculus
ENSORLG00020017383	lsm6	96	75.325	ENSJJAG00000016942	-	97	75.325	Jaculus_jaculus
ENSORLG00020017383	lsm6	100	93.750	ENSJJAG00000013845	-	100	93.750	Jaculus_jaculus
ENSORLG00020017383	lsm6	100	98.750	ENSKMAG00000004105	lsm6	100	98.750	Kryptolebias_marmoratus
ENSORLG00020017383	lsm6	100	98.750	ENSLBEG00000018441	lsm6	100	98.750	Labrus_bergylta
ENSORLG00020017383	lsm6	100	93.750	ENSLACG00000006937	LSM6	100	93.750	Latimeria_chalumnae
ENSORLG00020017383	lsm6	100	95.000	ENSLOCG00000017683	-	100	95.000	Lepisosteus_oculatus
ENSORLG00020017383	lsm6	100	96.250	ENSLOCG00000008852	lsm6	100	96.250	Lepisosteus_oculatus
ENSORLG00020017383	lsm6	100	93.750	ENSLAFG00000001952	LSM6	100	93.750	Loxodonta_africana
ENSORLG00020017383	lsm6	100	93.750	ENSMFAG00000033073	LSM6	100	93.750	Macaca_fascicularis
ENSORLG00020017383	lsm6	100	93.750	ENSMNEG00000034820	-	100	93.750	Macaca_nemestrina
ENSORLG00020017383	lsm6	100	72.500	ENSMNEG00000040412	-	100	72.500	Macaca_nemestrina
ENSORLG00020017383	lsm6	100	93.750	ENSMLEG00000035153	LSM6	100	93.750	Mandrillus_leucophaeus
ENSORLG00020017383	lsm6	100	98.750	ENSMAMG00000014029	lsm6	100	98.750	Mastacembelus_armatus
ENSORLG00020017383	lsm6	100	98.750	ENSMZEG00005009146	lsm6	100	98.750	Maylandia_zebra
ENSORLG00020017383	lsm6	100	93.750	ENSMGAG00000003802	LSM6	100	93.750	Meleagris_gallopavo
ENSORLG00020017383	lsm6	100	93.750	ENSMAUG00000014938	Lsm6	100	93.750	Mesocricetus_auratus
ENSORLG00020017383	lsm6	100	93.750	ENSMICG00000042599	LSM6	100	93.750	Microcebus_murinus
ENSORLG00020017383	lsm6	98	87.179	ENSMICG00000047411	-	92	87.179	Microcebus_murinus
ENSORLG00020017383	lsm6	100	93.750	ENSMOCG00000020049	Lsm6	100	93.750	Microtus_ochrogaster
ENSORLG00020017383	lsm6	100	92.500	ENSMMOG00000007379	-	100	92.500	Mola_mola
ENSORLG00020017383	lsm6	100	98.750	ENSMMOG00000005470	lsm6	100	98.750	Mola_mola
ENSORLG00020017383	lsm6	100	93.750	ENSMODG00000000526	LSM6	100	93.750	Monodelphis_domestica
ENSORLG00020017383	lsm6	100	98.750	ENSMALG00000002419	lsm6	100	98.750	Monopterus_albus
ENSORLG00020017383	lsm6	100	93.750	MGP_CAROLIEiJ_G0031245	Lsm6	100	93.750	Mus_caroli
ENSORLG00020017383	lsm6	100	93.750	ENSMUSG00000031683	Lsm6	100	93.750	Mus_musculus
ENSORLG00020017383	lsm6	100	93.750	MGP_PahariEiJ_G0022851	Lsm6	100	93.750	Mus_pahari
ENSORLG00020017383	lsm6	100	93.750	MGP_SPRETEiJ_G0032365	Lsm6	100	93.750	Mus_spretus
ENSORLG00020017383	lsm6	99	94.937	ENSMPUG00000006936	LSM6	92	94.937	Mustela_putorius_furo
ENSORLG00020017383	lsm6	100	93.750	ENSMLUG00000026355	LSM6	100	93.750	Myotis_lucifugus
ENSORLG00020017383	lsm6	100	93.750	ENSNGAG00000019116	Lsm6	100	93.750	Nannospalax_galili
ENSORLG00020017383	lsm6	100	98.750	ENSNBRG00000004887	lsm6	100	98.750	Neolamprologus_brichardi
ENSORLG00020017383	lsm6	100	93.750	ENSNLEG00000005584	LSM6	100	93.750	Nomascus_leucogenys
ENSORLG00020017383	lsm6	100	92.500	ENSOPRG00000011199	LSM6	100	92.500	Ochotona_princeps
ENSORLG00020017383	lsm6	100	91.250	ENSODEG00000020420	-	100	91.250	Octodon_degus
ENSORLG00020017383	lsm6	100	92.500	ENSODEG00000019419	-	100	92.500	Octodon_degus
ENSORLG00020017383	lsm6	96	84.416	ENSODEG00000018684	-	100	84.416	Octodon_degus
ENSORLG00020017383	lsm6	100	92.500	ENSODEG00000002307	-	100	92.500	Octodon_degus
ENSORLG00020017383	lsm6	100	98.750	ENSONIG00000010005	lsm6	100	98.750	Oreochromis_niloticus
ENSORLG00020017383	lsm6	98	67.949	ENSOANG00000006894	-	100	67.949	Ornithorhynchus_anatinus
ENSORLG00020017383	lsm6	98	67.949	ENSOANG00000006895	-	100	67.949	Ornithorhynchus_anatinus
ENSORLG00020017383	lsm6	100	100.000	ENSORLG00000024158	lsm6	100	100.000	Oryzias_latipes
ENSORLG00020017383	lsm6	100	100.000	ENSORLG00015016903	lsm6	100	100.000	Oryzias_latipes_hsok
ENSORLG00020017383	lsm6	100	98.750	ENSOMEG00000000074	lsm6	100	98.750	Oryzias_melastigma
ENSORLG00020017383	lsm6	100	93.750	ENSOGAG00000026665	-	100	93.750	Otolemur_garnettii
ENSORLG00020017383	lsm6	100	93.750	ENSOGAG00000033153	-	100	93.750	Otolemur_garnettii
ENSORLG00020017383	lsm6	99	88.608	ENSOARG00000011641	-	92	88.608	Ovis_aries
ENSORLG00020017383	lsm6	86	95.714	ENSOARG00000008509	-	90	95.714	Ovis_aries
ENSORLG00020017383	lsm6	100	93.750	ENSPPAG00000037929	LSM6	100	93.750	Pan_paniscus
ENSORLG00020017383	lsm6	100	93.750	ENSPPRG00000012806	LSM6	100	93.750	Panthera_pardus
ENSORLG00020017383	lsm6	100	93.750	ENSPTIG00000019769	LSM6	100	93.750	Panthera_tigris_altaica
ENSORLG00020017383	lsm6	100	93.750	ENSPTRG00000016488	LSM6	100	93.750	Pan_troglodytes
ENSORLG00020017383	lsm6	100	93.750	ENSPANG00000006552	LSM6	100	93.750	Papio_anubis
ENSORLG00020017383	lsm6	100	96.250	ENSPKIG00000016176	lsm6	100	96.250	Paramormyrops_kingsleyae
ENSORLG00020017383	lsm6	100	93.750	ENSPSIG00000016942	LSM6	100	93.750	Pelodiscus_sinensis
ENSORLG00020017383	lsm6	100	98.750	ENSPMGG00000018004	lsm6	100	98.750	Periophthalmus_magnuspinnatus
ENSORLG00020017383	lsm6	100	93.750	ENSPEMG00000012410	Lsm6	100	93.750	Peromyscus_maniculatus_bairdii
ENSORLG00020017383	lsm6	100	93.750	ENSPMAG00000006949	lsm6	100	93.750	Petromyzon_marinus
ENSORLG00020017383	lsm6	100	93.750	ENSPCIG00000023469	LSM6	85	93.151	Phascolarctos_cinereus
ENSORLG00020017383	lsm6	100	98.750	ENSPFOG00000008881	lsm6	100	98.750	Poecilia_formosa
ENSORLG00020017383	lsm6	100	98.750	ENSPLAG00000003202	lsm6	100	98.750	Poecilia_latipinna
ENSORLG00020017383	lsm6	100	98.750	ENSPMEG00000004000	lsm6	100	98.750	Poecilia_mexicana
ENSORLG00020017383	lsm6	100	98.750	ENSPREG00000023235	lsm6	100	98.750	Poecilia_reticulata
ENSORLG00020017383	lsm6	100	93.750	ENSPPYG00000015105	LSM6	100	93.750	Pongo_abelii
ENSORLG00020017383	lsm6	100	93.750	ENSPCOG00000013899	LSM6	100	93.750	Propithecus_coquereli
ENSORLG00020017383	lsm6	100	98.750	ENSPNYG00000012614	lsm6	100	98.750	Pundamilia_nyererei
ENSORLG00020017383	lsm6	100	96.250	ENSPNAG00000018779	lsm6	100	96.250	Pygocentrus_nattereri
ENSORLG00020017383	lsm6	100	93.750	ENSRNOG00000049370	LOC100360750	100	93.750	Rattus_norvegicus
ENSORLG00020017383	lsm6	100	93.750	ENSRNOG00000030374	Lsm6	100	93.750	Rattus_norvegicus
ENSORLG00020017383	lsm6	100	93.750	ENSRBIG00000027878	LSM6	100	93.750	Rhinopithecus_bieti
ENSORLG00020017383	lsm6	100	93.750	ENSRROG00000024868	LSM6	100	93.750	Rhinopithecus_roxellana
ENSORLG00020017383	lsm6	95	41.250	YDR378C	-	93	45.000	Saccharomyces_cerevisiae
ENSORLG00020017383	lsm6	100	93.750	ENSSBOG00000021229	-	100	93.750	Saimiri_boliviensis_boliviensis
ENSORLG00020017383	lsm6	100	67.500	ENSSBOG00000028103	-	100	67.500	Saimiri_boliviensis_boliviensis
ENSORLG00020017383	lsm6	100	96.250	ENSSFOG00015016480	lsm6	100	96.250	Scleropages_formosus
ENSORLG00020017383	lsm6	100	98.750	ENSSMAG00000004550	lsm6	100	98.750	Scophthalmus_maximus
ENSORLG00020017383	lsm6	100	98.750	ENSSDUG00000020459	lsm6	50	98.750	Seriola_dumerili
ENSORLG00020017383	lsm6	100	98.750	ENSSLDG00000020533	lsm6	83	98.750	Seriola_lalandi_dorsalis
ENSORLG00020017383	lsm6	93	94.667	ENSSLDG00000004136	-	65	94.667	Seriola_lalandi_dorsalis
ENSORLG00020017383	lsm6	60	91.667	ENSSARG00000000689	LSM6	100	91.667	Sorex_araneus
ENSORLG00020017383	lsm6	100	93.750	ENSSPUG00000008657	LSM6	100	93.750	Sphenodon_punctatus
ENSORLG00020017383	lsm6	100	98.750	ENSSPAG00000003246	lsm6	100	98.750	Stegastes_partitus
ENSORLG00020017383	lsm6	100	93.750	ENSSSCG00000035973	LSM6	100	93.750	Sus_scrofa
ENSORLG00020017383	lsm6	100	93.750	ENSTGUG00000002663	LSM6	100	93.750	Taeniopygia_guttata
ENSORLG00020017383	lsm6	100	98.750	ENSTRUG00000023398	lsm6	100	98.750	Takifugu_rubripes
ENSORLG00020017383	lsm6	100	98.750	ENSTNIG00000017725	lsm6	100	98.750	Tetraodon_nigroviridis
ENSORLG00020017383	lsm6	100	93.750	ENSTTRG00000004609	LSM6	100	93.750	Tursiops_truncatus
ENSORLG00020017383	lsm6	100	85.185	ENSUAMG00000014213	LSM6	66	85.185	Ursus_americanus
ENSORLG00020017383	lsm6	100	85.185	ENSUMAG00000015727	LSM6	66	85.185	Ursus_maritimus
ENSORLG00020017383	lsm6	100	93.750	ENSVPAG00000006922	LSM6	100	93.750	Vicugna_pacos
ENSORLG00020017383	lsm6	100	93.750	ENSVVUG00000009254	LSM6	68	93.750	Vulpes_vulpes
ENSORLG00020017383	lsm6	100	93.750	ENSXETG00000023683	lsm6	100	93.750	Xenopus_tropicalis
ENSORLG00020017383	lsm6	100	98.750	ENSXMAG00000009606	lsm6	100	98.750	Xiphophorus_maculatus