EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020017871 (Gene tree)
Gene ID: -
Gene Symbol: rbm38
Alias: -
Full Name: RNA binding motif protein 38
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 28341 bases
Position: chr7:18561632-18589972
Accession: ZDB-GENE-030131-5923
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020032352	RRM_1	PF00076.22	2.9e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020025312	-	1167	-	ENSORLP00020032352	251 (aa)	-	-

Gene Model

Click here to download ENSORLG00020017871's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020017871's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020017871	rbm38	86	38.095	ENSORLG00020007978	celf3a	61	38.095
ENSORLG00020017871	rbm38	67	36.620	ENSORLG00020015195	dazap1	66	36.620
ENSORLG00020017871	rbm38	62	65.432	ENSORLG00020014541	rbm24b	100	53.333
ENSORLG00020017871	rbm38	98	57.540	ENSORLG00020020751	-	100	58.039
ENSORLG00020017871	rbm38	54	71.852	ENSORLG00020005859	rbm24a	100	53.846

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020017871	rbm38	91	55.983	ENSG00000132819	RBM38	94	80.342	Homo_sapiens
ENSORLG00020017871	rbm38	100	85.259	ENSAPOG00000003301	rbm38	100	85.259	Acanthochromis_polyacanthus
ENSORLG00020017871	rbm38	98	59.127	ENSAPOG00000009939	-	100	59.127	Acanthochromis_polyacanthus
ENSORLG00020017871	rbm38	100	82.470	ENSACIG00000000010	rbm38	100	82.470	Amphilophus_citrinellus
ENSORLG00020017871	rbm38	98	58.730	ENSACIG00000012502	-	100	81.197	Amphilophus_citrinellus
ENSORLG00020017871	rbm38	100	85.657	ENSAOCG00000013497	-	100	85.657	Amphiprion_ocellaris
ENSORLG00020017871	rbm38	96	59.426	ENSAOCG00000012559	RBM38	99	60.000	Amphiprion_ocellaris
ENSORLG00020017871	rbm38	100	85.657	ENSAPEG00000013137	rbm38	100	85.657	Amphiprion_percula
ENSORLG00020017871	rbm38	98	58.730	ENSAPEG00000023581	-	100	58.824	Amphiprion_percula
ENSORLG00020017871	rbm38	98	58.333	ENSATEG00000016710	-	100	58.824	Anabas_testudineus
ENSORLG00020017871	rbm38	100	80.478	ENSATEG00000016366	rbm38	100	80.478	Anabas_testudineus
ENSORLG00020017871	rbm38	93	56.250	ENSACAG00000016238	RBM38	90	56.250	Anolis_carolinensis
ENSORLG00020017871	rbm38	93	56.067	ENSANAG00000031959	RBM38	80	85.714	Aotus_nancymaae
ENSORLG00020017871	rbm38	98	59.216	ENSACLG00000019514	-	100	59.216	Astatotilapia_calliptera
ENSORLG00020017871	rbm38	94	54.894	ENSAMXG00000038120	rbm38	94	54.894	Astyanax_mexicanus
ENSORLG00020017871	rbm38	98	58.964	ENSAMXG00000015601	-	100	58.964	Astyanax_mexicanus
ENSORLG00020017871	rbm38	91	56.410	ENSBTAG00000008105	RBM38	89	56.410	Bos_taurus
ENSORLG00020017871	rbm38	91	55.556	ENSCJAG00000019139	RBM38	80	85.714	Callithrix_jacchus
ENSORLG00020017871	rbm38	93	56.067	ENSCAFG00020021943	RBM38	90	56.067	Canis_lupus_dingo
ENSORLG00020017871	rbm38	91	55.128	ENSCHIG00000002609	RBM38	89	55.128	Capra_hircus
ENSORLG00020017871	rbm38	91	56.410	ENSCPOG00000012781	RBM38	89	56.410	Cavia_porcellus
ENSORLG00020017871	rbm38	91	55.556	ENSCCAG00000036872	RBM38	80	85.714	Cebus_capucinus
ENSORLG00020017871	rbm38	91	56.410	ENSCATG00000032133	RBM38	80	85.714	Cercocebus_atys
ENSORLG00020017871	rbm38	93	56.067	ENSCLAG00000005906	RBM38	94	56.067	Chinchilla_lanigera
ENSORLG00020017871	rbm38	91	56.410	ENSCSAG00000015503	RBM38	89	56.410	Chlorocebus_sabaeus
ENSORLG00020017871	rbm38	93	56.667	ENSCPBG00000024059	RBM38	100	56.667	Chrysemys_picta_bellii
ENSORLG00020017871	rbm38	59	61.783	ENSCING00000025102	-	66	61.783	Ciona_intestinalis
ENSORLG00020017871	rbm38	61	61.392	ENSCSAVG00000001132	-	98	44.528	Ciona_savignyi
ENSORLG00020017871	rbm38	80	46.000	ENSCANG00000030105	-	73	46.000	Colobus_angolensis_palliatus
ENSORLG00020017871	rbm38	72	63.388	ENSCGRG00001012928	Rbm38	89	56.838	Cricetulus_griseus_chok1gshd
ENSORLG00020017871	rbm38	98	57.937	ENSCSEG00000004701	-	100	58.661	Cynoglossus_semilaevis
ENSORLG00020017871	rbm38	81	64.039	ENSCSEG00000020943	rbm38	66	64.039	Cynoglossus_semilaevis
ENSORLG00020017871	rbm38	100	78.088	ENSCVAG00000015952	rbm38	100	81.275	Cyprinodon_variegatus
ENSORLG00020017871	rbm38	98	59.524	ENSCVAG00000005472	-	100	59.524	Cyprinodon_variegatus
ENSORLG00020017871	rbm38	97	58.943	ENSDARG00000058818	rbm38	99	58.943	Danio_rerio
ENSORLG00020017871	rbm38	76	60.622	ENSDNOG00000032004	RBM38	89	60.622	Dasypus_novemcinctus
ENSORLG00020017871	rbm38	91	55.983	ENSECAG00000007700	RBM38	89	55.983	Equus_caballus
ENSORLG00020017871	rbm38	91	57.265	ENSEEUG00000013489	RBM38	89	57.265	Erinaceus_europaeus
ENSORLG00020017871	rbm38	91	64.192	ENSELUG00000000585	-	99	64.192	Esox_lucius
ENSORLG00020017871	rbm38	98	57.422	ENSELUG00000005849	-	100	57.422	Esox_lucius
ENSORLG00020017871	rbm38	74	62.766	ENSFCAG00000042916	RBM38	80	84.694	Felis_catus
ENSORLG00020017871	rbm38	69	66.102	ENSFALG00000010805	RBM38	89	66.102	Ficedula_albicollis
ENSORLG00020017871	rbm38	100	83.333	ENSFHEG00000017748	rbm38	100	83.333	Fundulus_heteroclitus
ENSORLG00020017871	rbm38	98	59.127	ENSFHEG00000006160	-	99	58.824	Fundulus_heteroclitus
ENSORLG00020017871	rbm38	75	63.874	ENSGMOG00000016655	-	100	66.492	Gadus_morhua
ENSORLG00020017871	rbm38	93	56.250	ENSGALG00000026081	RBM38	100	55.833	Gallus_gallus
ENSORLG00020017871	rbm38	93	56.723	ENSGACG00000009873	-	100	56.723	Gasterosteus_aculeatus
ENSORLG00020017871	rbm38	93	72.222	ENSGACG00000015224	rbm38	100	72.222	Gasterosteus_aculeatus
ENSORLG00020017871	rbm38	93	56.250	ENSGAGG00000001187	RBM38	100	56.250	Gopherus_agassizii
ENSORLG00020017871	rbm38	98	59.216	ENSHBUG00000011778	-	100	59.216	Haplochromis_burtoni
ENSORLG00020017871	rbm38	100	82.072	ENSHBUG00000012058	rbm38	100	82.072	Haplochromis_burtoni
ENSORLG00020017871	rbm38	93	55.230	ENSHGLG00000015077	RBM38	90	55.230	Heterocephalus_glaber_female
ENSORLG00020017871	rbm38	85	61.574	ENSHCOG00000005622	-	60	62.037	Hippocampus_comes
ENSORLG00020017871	rbm38	100	59.921	ENSHCOG00000019040	rbm38	100	59.921	Hippocampus_comes
ENSORLG00020017871	rbm38	94	56.846	ENSIPUG00000019349	-	96	56.846	Ictalurus_punctatus
ENSORLG00020017871	rbm38	91	70.763	ENSKMAG00000012402	rbm38	99	71.186	Kryptolebias_marmoratus
ENSORLG00020017871	rbm38	98	58.730	ENSLBEG00000016163	RBM38	100	58.730	Labrus_bergylta
ENSORLG00020017871	rbm38	100	81.673	ENSLBEG00000018878	rbm38	100	81.673	Labrus_bergylta
ENSORLG00020017871	rbm38	98	58.233	ENSLOCG00000003456	rbm38	100	58.233	Lepisosteus_oculatus
ENSORLG00020017871	rbm38	91	56.410	ENSMFAG00000043808	RBM38	80	85.714	Macaca_fascicularis
ENSORLG00020017871	rbm38	91	56.410	ENSMMUG00000031391	RBM38	80	85.714	Macaca_mulatta
ENSORLG00020017871	rbm38	91	56.410	ENSMNEG00000034683	RBM38	80	85.714	Macaca_nemestrina
ENSORLG00020017871	rbm38	100	82.869	ENSMAMG00000024135	rbm38	100	82.869	Mastacembelus_armatus
ENSORLG00020017871	rbm38	98	58.566	ENSMAMG00000020499	RBM38	100	59.055	Mastacembelus_armatus
ENSORLG00020017871	rbm38	100	82.072	ENSMZEG00005026036	rbm38	100	82.072	Maylandia_zebra
ENSORLG00020017871	rbm38	98	59.216	ENSMZEG00005000849	-	100	59.216	Maylandia_zebra
ENSORLG00020017871	rbm38	72	64.481	ENSMAUG00000021211	Rbm38	89	58.120	Mesocricetus_auratus
ENSORLG00020017871	rbm38	93	55.649	ENSMICG00000038011	RBM38	100	55.649	Microcebus_murinus
ENSORLG00020017871	rbm38	72	63.934	ENSMOCG00000008715	Rbm38	89	57.692	Microtus_ochrogaster
ENSORLG00020017871	rbm38	98	58.730	ENSMMOG00000020051	-	100	58.824	Mola_mola
ENSORLG00020017871	rbm38	78	60.804	ENSMODG00000016458	RBM38	94	54.733	Monodelphis_domestica
ENSORLG00020017871	rbm38	100	66.932	ENSMALG00000022327	rbm38	100	69.323	Monopterus_albus
ENSORLG00020017871	rbm38	75	66.316	ENSMALG00000004680	RBM38	84	60.268	Monopterus_albus
ENSORLG00020017871	rbm38	91	55.556	MGP_CAROLIEiJ_G0024745	Rbm38	63	82.000	Mus_caroli
ENSORLG00020017871	rbm38	91	55.556	ENSMUSG00000027510	Rbm38	63	82.000	Mus_musculus
ENSORLG00020017871	rbm38	91	55.556	MGP_PahariEiJ_G0026186	Rbm38	63	82.000	Mus_pahari
ENSORLG00020017871	rbm38	91	55.556	MGP_SPRETEiJ_G0025665	Rbm38	63	82.000	Mus_spretus
ENSORLG00020017871	rbm38	74	63.298	ENSMPUG00000006518	RBM38	91	63.298	Mustela_putorius_furo
ENSORLG00020017871	rbm38	76	62.564	ENSMLUG00000011140	RBM38	88	62.564	Myotis_lucifugus
ENSORLG00020017871	rbm38	100	81.673	ENSNBRG00000022685	rbm38	100	81.673	Neolamprologus_brichardi
ENSORLG00020017871	rbm38	98	59.216	ENSNBRG00000022545	-	100	59.216	Neolamprologus_brichardi
ENSORLG00020017871	rbm38	52	67.939	ENSMEUG00000005475	-	96	67.939	Notamacropus_eugenii
ENSORLG00020017871	rbm38	91	55.983	ENSODEG00000007980	RBM38	89	55.983	Octodon_degus
ENSORLG00020017871	rbm38	98	82.114	ENSONIG00000017073	rbm38	100	82.114	Oreochromis_niloticus
ENSORLG00020017871	rbm38	98	59.055	ENSONIG00000020324	-	100	59.055	Oreochromis_niloticus
ENSORLG00020017871	rbm38	91	55.128	ENSOANG00000009259	RBM38	81	55.128	Ornithorhynchus_anatinus
ENSORLG00020017871	rbm38	98	57.540	ENSORLG00000027180	-	100	58.039	Oryzias_latipes
ENSORLG00020017871	rbm38	100	98.406	ENSORLG00000012154	rbm38	100	98.406	Oryzias_latipes
ENSORLG00020017871	rbm38	100	99.203	ENSORLG00015012606	rbm38	100	99.203	Oryzias_latipes_hsok
ENSORLG00020017871	rbm38	98	57.708	ENSORLG00015017040	-	100	58.498	Oryzias_latipes_hsok
ENSORLG00020017871	rbm38	98	56.349	ENSOMEG00000023912	-	100	56.349	Oryzias_melastigma
ENSORLG00020017871	rbm38	100	95.219	ENSOMEG00000006805	rbm38	100	95.219	Oryzias_melastigma
ENSORLG00020017871	rbm38	91	56.410	ENSOGAG00000029136	RBM38	88	56.410	Otolemur_garnettii
ENSORLG00020017871	rbm38	74	62.766	ENSPPRG00000009507	RBM38	80	84.694	Panthera_pardus
ENSORLG00020017871	rbm38	75	62.500	ENSPTRG00000013661	RBM38	80	85.714	Pan_troglodytes
ENSORLG00020017871	rbm38	50	79.200	ENSPTRG00000045845	-	68	79.200	Pan_troglodytes
ENSORLG00020017871	rbm38	91	56.410	ENSPANG00000020919	-	80	85.714	Papio_anubis
ENSORLG00020017871	rbm38	95	46.122	ENSPANG00000033127	-	96	46.122	Papio_anubis
ENSORLG00020017871	rbm38	93	58.051	ENSPKIG00000018122	-	100	77.778	Paramormyrops_kingsleyae
ENSORLG00020017871	rbm38	100	54.688	ENSPKIG00000025417	rbm38	100	57.087	Paramormyrops_kingsleyae
ENSORLG00020017871	rbm38	93	55.833	ENSPSIG00000011649	RBM38	92	55.833	Pelodiscus_sinensis
ENSORLG00020017871	rbm38	98	57.874	ENSPMGG00000017094	-	100	57.874	Periophthalmus_magnuspinnatus
ENSORLG00020017871	rbm38	100	69.444	ENSPMGG00000011343	rbm38	100	71.032	Periophthalmus_magnuspinnatus
ENSORLG00020017871	rbm38	95	55.556	ENSPCIG00000013648	RBM38	94	55.556	Phascolarctos_cinereus
ENSORLG00020017871	rbm38	100	79.608	ENSPFOG00000011658	rbm38	100	83.529	Poecilia_formosa
ENSORLG00020017871	rbm38	98	58.594	ENSPLAG00000002500	-	100	59.289	Poecilia_latipinna
ENSORLG00020017871	rbm38	100	79.216	ENSPLAG00000005218	rbm38	100	83.137	Poecilia_latipinna
ENSORLG00020017871	rbm38	100	78.431	ENSPMEG00000015770	rbm38	100	83.137	Poecilia_mexicana
ENSORLG00020017871	rbm38	100	79.216	ENSPREG00000007398	rbm38	100	83.137	Poecilia_reticulata
ENSORLG00020017871	rbm38	95	55.556	ENSPCOG00000026201	RBM38	83	83.333	Propithecus_coquereli
ENSORLG00020017871	rbm38	72	39.344	ENSPVAG00000006457	RBM38	89	37.607	Pteropus_vampyrus
ENSORLG00020017871	rbm38	98	59.216	ENSPNYG00000019727	-	100	81.197	Pundamilia_nyererei
ENSORLG00020017871	rbm38	100	81.673	ENSPNYG00000021373	rbm38	100	81.673	Pundamilia_nyererei
ENSORLG00020017871	rbm38	98	59.363	ENSPNAG00000015123	-	91	79.661	Pygocentrus_nattereri
ENSORLG00020017871	rbm38	95	56.911	ENSPNAG00000010596	rbm38	96	56.911	Pygocentrus_nattereri
ENSORLG00020017871	rbm38	91	57.265	ENSRNOG00000006420	Rbm38	89	57.265	Rattus_norvegicus
ENSORLG00020017871	rbm38	93	49.576	ENSRROG00000036388	-	89	49.576	Rhinopithecus_roxellana
ENSORLG00020017871	rbm38	93	55.230	ENSSBOG00000031053	RBM38	91	85.714	Saimiri_boliviensis_boliviensis
ENSORLG00020017871	rbm38	94	56.667	ENSSFOG00015004453	rbm38	95	60.000	Scleropages_formosus
ENSORLG00020017871	rbm38	100	84.064	ENSSDUG00000022611	rbm38	100	84.064	Seriola_dumerili
ENSORLG00020017871	rbm38	98	58.730	ENSSDUG00000021082	RBM38	100	59.608	Seriola_dumerili
ENSORLG00020017871	rbm38	98	59.127	ENSSLDG00000011778	RBM38	100	60.000	Seriola_lalandi_dorsalis
ENSORLG00020017871	rbm38	100	84.064	ENSSLDG00000010845	rbm38	100	84.064	Seriola_lalandi_dorsalis
ENSORLG00020017871	rbm38	100	85.259	ENSSPAG00000011113	rbm38	100	85.259	Stegastes_partitus
ENSORLG00020017871	rbm38	98	59.127	ENSSPAG00000020989	RBM38	100	59.216	Stegastes_partitus
ENSORLG00020017871	rbm38	91	55.983	ENSSSCG00000007504	RBM38	89	55.983	Sus_scrofa
ENSORLG00020017871	rbm38	100	73.705	ENSTRUG00000024954	rbm38	100	76.096	Takifugu_rubripes
ENSORLG00020017871	rbm38	98	57.480	ENSTRUG00000019869	-	100	58.730	Takifugu_rubripes
ENSORLG00020017871	rbm38	93	61.088	ENSTNIG00000007093	-	100	61.088	Tetraodon_nigroviridis
ENSORLG00020017871	rbm38	74	62.766	ENSUAMG00000019780	RBM38	90	55.649	Ursus_americanus
ENSORLG00020017871	rbm38	93	56.067	ENSVVUG00000017246	RBM38	90	56.067	Vulpes_vulpes
ENSORLG00020017871	rbm38	76	62.245	ENSXETG00000011268	rbm38	99	55.372	Xenopus_tropicalis
ENSORLG00020017871	rbm38	72	58.031	ENSXCOG00000017324	-	88	58.031	Xiphophorus_couchianus
ENSORLG00020017871	rbm38	100	80.876	ENSXMAG00000023662	rbm38	100	84.861	Xiphophorus_maculatus