EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020017943 (Gene tree)
Gene ID: -
Gene Symbol: ncl
Alias: -
Full Name: nucleolin
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 7742 bases
Position: chr4:11733307-11741048
Accession: ZDB-GENE-030131-6986
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020016905	RRM_1	PF00076.22	1.8e-59	1	4
ENSORLP00020016905	RRM_1	PF00076.22	1.8e-59	2	4
ENSORLP00020016905	RRM_1	PF00076.22	1.8e-59	3	4
ENSORLP00020016905	RRM_1	PF00076.22	1.8e-59	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020025297	-	3892	-	ENSORLP00020016905	733 (aa)	-	-

Gene Model

Click here to download ENSORLG00020017943's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020017943's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020017943	ncl	58	35.506	ENSORLG00020003497	-	74	38.120

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020017943	ncl	60	85.067	ENSAPOG00000023888	ncl	59	83.333	Acanthochromis_polyacanthus
ENSORLG00020017943	ncl	55	42.619	ENSAPOG00000014534	-	67	42.526	Acanthochromis_polyacanthus
ENSORLG00020017943	ncl	68	77.926	ENSACIG00000013234	ncl	62	77.867	Amphilophus_citrinellus
ENSORLG00020017943	ncl	56	39.860	ENSAOCG00000014792	-	61	40.885	Amphiprion_ocellaris
ENSORLG00020017943	ncl	56	40.093	ENSAPEG00000013612	-	60	41.146	Amphiprion_percula
ENSORLG00020017943	ncl	59	43.860	ENSATEG00000019862	-	80	44.845	Anabas_testudineus
ENSORLG00020017943	ncl	63	70.884	ENSATEG00000013343	ncl	60	83.810	Anabas_testudineus
ENSORLG00020017943	ncl	54	55.416	ENSAPLG00000012897	-	63	55.673	Anas_platyrhynchos
ENSORLG00020017943	ncl	64	68.966	ENSAMXG00000001647	ncl	83	72.241	Astyanax_mexicanus
ENSORLG00020017943	ncl	63	56.379	ENSCPBG00000016444	-	55	60.811	Chrysemys_picta_bellii
ENSORLG00020017943	ncl	50	80.697	ENSCSEG00000015089	ncl	56	80.965	Cynoglossus_semilaevis
ENSORLG00020017943	ncl	67	74.171	ENSDARG00000002710	ncl	82	76.699	Danio_rerio
ENSORLG00020017943	ncl	65	48.267	ENSDNOG00000040257	-	58	48.718	Dasypus_novemcinctus
ENSORLG00020017943	ncl	65	48.089	ENSEBUG00000016173	ncl	57	49.318	Eptatretus_burgeri
ENSORLG00020017943	ncl	57	74.118	ENSELUG00000006033	ncl	56	75.661	Esox_lucius
ENSORLG00020017943	ncl	58	46.948	ENSELUG00000022826	-	80	50.269	Esox_lucius
ENSORLG00020017943	ncl	51	77.867	ENSFHEG00000018000	ncl	72	77.143	Fundulus_heteroclitus
ENSORLG00020017943	ncl	52	69.110	ENSGMOG00000001341	ncl	59	68.000	Gadus_morhua
ENSORLG00020017943	ncl	58	52.336	ENSGALG00000032930	NCL	55	55.937	Gallus_gallus
ENSORLG00020017943	ncl	65	79.399	ENSGAFG00000015375	ncl	58	82.353	Gambusia_affinis
ENSORLG00020017943	ncl	74	63.712	ENSGACG00000008970	ncl	60	79.730	Gasterosteus_aculeatus
ENSORLG00020017943	ncl	58	57.143	ENSGAGG00000013330	-	54	61.081	Gopherus_agassizii
ENSORLG00020017943	ncl	51	78.706	ENSHBUG00000006869	ncl	60	76.066	Haplochromis_burtoni
ENSORLG00020017943	ncl	71	84.726	ENSKMAG00000008111	ncl	59	82.578	Kryptolebias_marmoratus
ENSORLG00020017943	ncl	52	43.583	ENSLBEG00000014278	-	82	43.132	Labrus_bergylta
ENSORLG00020017943	ncl	60	42.637	ENSLBEG00000007915	-	66	43.702	Labrus_bergylta
ENSORLG00020017943	ncl	54	49.242	ENSLACG00000022167	-	76	51.821	Latimeria_chalumnae
ENSORLG00020017943	ncl	57	62.972	ENSLACG00000009328	ncl	72	65.278	Latimeria_chalumnae
ENSORLG00020017943	ncl	57	39.318	ENSMAMG00000003479	-	69	40.104	Mastacembelus_armatus
ENSORLG00020017943	ncl	77	78.355	ENSMAMG00000002086	ncl	55	78.194	Mastacembelus_armatus
ENSORLG00020017943	ncl	52	60.444	ENSMGAG00000008147	-	84	57.500	Meleagris_gallopavo
ENSORLG00020017943	ncl	51	57.106	ENSMODG00000002470	-	54	56.701	Monodelphis_domestica
ENSORLG00020017943	ncl	91	35.620	ENSMALG00000014827	ncl	59	81.313	Monopterus_albus
ENSORLG00020017943	ncl	52	41.161	ENSONIG00000010631	-	97	40.800	Oreochromis_niloticus
ENSORLG00020017943	ncl	60	70.023	ENSONIG00000012508	ncl	59	76.247	Oreochromis_niloticus
ENSORLG00020017943	ncl	54	57.750	ENSOANG00000008732	-	59	59.318	Ornithorhynchus_anatinus
ENSORLG00020017943	ncl	100	98.639	ENSORLG00000007055	ncl	100	98.639	Oryzias_latipes
ENSORLG00020017943	ncl	55	36.842	ENSORLG00000004645	-	83	38.120	Oryzias_latipes
ENSORLG00020017943	ncl	71	94.749	ENSORLG00015013815	ncl	98	93.103	Oryzias_latipes_hsok
ENSORLG00020017943	ncl	54	37.317	ENSORLG00015006613	-	77	38.120	Oryzias_latipes_hsok
ENSORLG00020017943	ncl	51	38.205	ENSOMEG00000015864	-	82	37.824	Oryzias_melastigma
ENSORLG00020017943	ncl	57	75.829	ENSPKIG00000002604	ncl	52	78.437	Paramormyrops_kingsleyae
ENSORLG00020017943	ncl	67	77.381	ENSPMGG00000004709	ncl	83	79.479	Periophthalmus_magnuspinnatus
ENSORLG00020017943	ncl	51	57.881	ENSPCIG00000003293	-	54	57.474	Phascolarctos_cinereus
ENSORLG00020017943	ncl	64	79.274	ENSPFOG00000024205	ncl	58	81.221	Poecilia_formosa
ENSORLG00020017943	ncl	64	79.872	ENSPLAG00000024026	ncl	58	81.882	Poecilia_latipinna
ENSORLG00020017943	ncl	64	80.300	ENSPMEG00000006000	ncl	58	82.353	Poecilia_mexicana
ENSORLG00020017943	ncl	57	70.142	ENSPNAG00000006192	ncl	58	69.340	Pygocentrus_nattereri
ENSORLG00020017943	ncl	51	54.308	ENSSHAG00000002702	-	59	54.167	Sarcophilus_harrisii
ENSORLG00020017943	ncl	52	44.126	ENSSFOG00015013153	-	78	45.192	Scleropages_formosus
ENSORLG00020017943	ncl	68	37.838	ENSSMAG00000007582	-	61	43.979	Scophthalmus_maximus
ENSORLG00020017943	ncl	62	40.127	ENSSDUG00000010922	-	70	42.708	Seriola_dumerili
ENSORLG00020017943	ncl	85	81.562	ENSSDUG00000006128	ncl	91	83.095	Seriola_dumerili
ENSORLG00020017943	ncl	53	42.893	ENSSLDG00000015784	-	65	42.932	Seriola_lalandi_dorsalis
ENSORLG00020017943	ncl	51	59.897	ENSSPUG00000008244	-	55	60.882	Sphenodon_punctatus
ENSORLG00020017943	ncl	53	43.142	ENSSPAG00000001859	-	61	42.971	Stegastes_partitus
ENSORLG00020017943	ncl	53	86.525	ENSSPAG00000002637	ncl	82	86.525	Stegastes_partitus
ENSORLG00020017943	ncl	57	78.487	ENSTRUG00000008185	ncl	55	81.671	Takifugu_rubripes
ENSORLG00020017943	ncl	51	60.847	ENSXETG00000009517	ncl	54	60.847	Xenopus_tropicalis
ENSORLG00020017943	ncl	53	51.553	ENSXCOG00000003524	ncl	88	66.133	Xiphophorus_couchianus
ENSORLG00020017943	ncl	50	41.316	ENSXCOG00000007369	-	89	41.316	Xiphophorus_couchianus
ENSORLG00020017943	ncl	52	85.039	ENSXMAG00000005914	ncl	58	83.645	Xiphophorus_maculatus