EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020018671 (Gene tree)
Gene ID: -
Gene Symbol: usb1
Alias: -
Full Name: U6 snRNA biogenesis 1
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 9554 bases
Position: chr6:21613271-21622824
Accession: ZDB-GENE-040801-197
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020032903	HVSL	PF09749.9	1.6e-64	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020034415	-	5493	-	ENSORLP00020032903	271 (aa)	-	-

Gene Model

Click here to download ENSORLG00020018671's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020018671's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020018671	usb1	99	48.148	ENSG00000103005	USB1	100	52.804	Homo_sapiens
ENSORLG00020018671	usb1	100	71.429	ENSAPOG00000011942	usb1	88	76.829	Acanthochromis_polyacanthus
ENSORLG00020018671	usb1	82	50.446	ENSAMEG00000017205	USB1	83	50.446	Ailuropoda_melanoleuca
ENSORLG00020018671	usb1	88	72.541	ENSACIG00000012234	usb1	90	72.541	Amphilophus_citrinellus
ENSORLG00020018671	usb1	99	70.107	ENSAOCG00000014831	usb1	87	76.327	Amphiprion_ocellaris
ENSORLG00020018671	usb1	99	70.107	ENSAPEG00000000296	usb1	87	76.327	Amphiprion_percula
ENSORLG00020018671	usb1	99	69.643	ENSATEG00000009348	usb1	93	71.538	Anabas_testudineus
ENSORLG00020018671	usb1	82	54.222	ENSAPLG00000002756	USB1	99	54.222	Anas_platyrhynchos
ENSORLG00020018671	usb1	82	50.222	ENSACAG00000015481	USB1	98	50.222	Anolis_carolinensis
ENSORLG00020018671	usb1	84	49.561	ENSANAG00000035640	USB1	86	49.561	Aotus_nancymaae
ENSORLG00020018671	usb1	96	70.656	ENSACLG00000020586	usb1	88	73.171	Astatotilapia_calliptera
ENSORLG00020018671	usb1	82	62.500	ENSAMXG00000040146	usb1	74	62.500	Astyanax_mexicanus
ENSORLG00020018671	usb1	99	45.556	ENSBTAG00000015758	USB1	94	46.586	Bos_taurus
ENSORLG00020018671	usb1	84	50.877	ENSCJAG00000011733	USB1	94	48.193	Callithrix_jacchus
ENSORLG00020018671	usb1	99	44.610	ENSCAFG00000008556	USB1	62	47.639	Canis_familiaris
ENSORLG00020018671	usb1	99	45.556	ENSCAFG00020009263	USB1	84	49.776	Canis_lupus_dingo
ENSORLG00020018671	usb1	99	45.185	ENSCHIG00000024290	USB1	94	46.185	Capra_hircus
ENSORLG00020018671	usb1	84	49.123	ENSTSYG00000006997	USB1	94	46.586	Carlito_syrichta
ENSORLG00020018671	usb1	85	40.693	ENSCAPG00000009057	USB1	99	40.693	Cavia_aperea
ENSORLG00020018671	usb1	99	46.296	ENSCPOG00000014325	USB1	86	49.784	Cavia_porcellus
ENSORLG00020018671	usb1	84	50.439	ENSCCAG00000022132	USB1	86	50.439	Cebus_capucinus
ENSORLG00020018671	usb1	99	47.778	ENSCATG00000032174	USB1	94	48.193	Cercocebus_atys
ENSORLG00020018671	usb1	63	50.289	ENSCLAG00000007363	USB1	87	52.288	Chinchilla_lanigera
ENSORLG00020018671	usb1	99	47.407	ENSCSAG00000004783	USB1	94	47.791	Chlorocebus_sabaeus
ENSORLG00020018671	usb1	87	52.542	ENSCPBG00000026943	USB1	85	52.542	Chrysemys_picta_bellii
ENSORLG00020018671	usb1	83	31.760	ENSCING00000011490	-	87	31.897	Ciona_intestinalis
ENSORLG00020018671	usb1	82	30.702	ENSCSAVG00000000894	-	83	30.702	Ciona_savignyi
ENSORLG00020018671	usb1	84	51.316	ENSCANG00000037135	USB1	94	48.594	Colobus_angolensis_palliatus
ENSORLG00020018671	usb1	99	46.863	ENSCGRG00001011243	USB1	84	51.339	Cricetulus_griseus_chok1gshd
ENSORLG00020018671	usb1	99	46.863	ENSCGRG00000013252	USB1	84	51.339	Cricetulus_griseus_crigri
ENSORLG00020018671	usb1	99	64.964	ENSCSEG00000013881	usb1	86	68.908	Cynoglossus_semilaevis
ENSORLG00020018671	usb1	82	73.568	ENSCVAG00000009252	usb1	97	73.568	Cyprinodon_variegatus
ENSORLG00020018671	usb1	82	59.821	ENSDARG00000003841	usb1	81	59.821	Danio_rerio
ENSORLG00020018671	usb1	99	45.185	ENSDORG00000001888	Usb1	85	50.000	Dipodomys_ordii
ENSORLG00020018671	usb1	75	40.291	FBgn0037713	CG16790	78	39.512	Drosophila_melanogaster
ENSORLG00020018671	usb1	99	38.889	ENSETEG00000019682	USB1	84	42.857	Echinops_telfairi
ENSORLG00020018671	usb1	94	40.959	ENSEBUG00000005889	usb1	95	40.959	Eptatretus_burgeri
ENSORLG00020018671	usb1	99	46.296	ENSEASG00005005484	USB1	85	50.893	Equus_asinus_asinus
ENSORLG00020018671	usb1	99	45.926	ENSECAG00000019493	USB1	77	50.673	Equus_caballus
ENSORLG00020018671	usb1	63	46.243	ENSEEUG00000000154	USB1	58	47.059	Erinaceus_europaeus
ENSORLG00020018671	usb1	86	64.407	ENSELUG00000010974	usb1	86	64.407	Esox_lucius
ENSORLG00020018671	usb1	89	47.521	ENSFCAG00000002693	USB1	89	47.521	Felis_catus
ENSORLG00020018671	usb1	85	53.478	ENSFALG00000006876	USB1	92	51.020	Ficedula_albicollis
ENSORLG00020018671	usb1	99	47.232	ENSFDAG00000010052	USB1	87	49.785	Fukomys_damarensis
ENSORLG00020018671	usb1	88	65.574	ENSFHEG00000012334	usb1	83	72.115	Fundulus_heteroclitus
ENSORLG00020018671	usb1	82	69.955	ENSGMOG00000004228	usb1	100	69.955	Gadus_morhua
ENSORLG00020018671	usb1	82	54.260	ENSGALG00000035604	USB1	88	54.464	Gallus_gallus
ENSORLG00020018671	usb1	100	69.928	ENSGAFG00000021890	usb1	90	72.800	Gambusia_affinis
ENSORLG00020018671	usb1	88	73.529	ENSGACG00000003257	usb1	86	73.529	Gasterosteus_aculeatus
ENSORLG00020018671	usb1	99	51.661	ENSGAGG00000022572	USB1	82	56.054	Gopherus_agassizii
ENSORLG00020018671	usb1	99	47.778	ENSGGOG00000017147	USB1	94	48.594	Gorilla_gorilla
ENSORLG00020018671	usb1	96	70.656	ENSHBUG00000009823	usb1	88	73.171	Haplochromis_burtoni
ENSORLG00020018671	usb1	99	46.691	ENSHGLG00000016078	USB1	82	50.224	Heterocephalus_glaber_female
ENSORLG00020018671	usb1	99	46.691	ENSHGLG00100005562	USB1	82	50.224	Heterocephalus_glaber_male
ENSORLG00020018671	usb1	80	72.477	ENSHCOG00000015633	usb1	87	72.321	Hippocampus_comes
ENSORLG00020018671	usb1	99	53.472	ENSIPUG00000008601	usb1	79	60.352	Ictalurus_punctatus
ENSORLG00020018671	usb1	82	51.339	ENSSTOG00000007548	USB1	82	51.339	Ictidomys_tridecemlineatus
ENSORLG00020018671	usb1	99	46.154	ENSJJAG00000021859	Usb1	84	51.339	Jaculus_jaculus
ENSORLG00020018671	usb1	94	74.510	ENSKMAG00000007200	usb1	89	74.510	Kryptolebias_marmoratus
ENSORLG00020018671	usb1	88	67.769	ENSLBEG00000008452	usb1	76	67.769	Labrus_bergylta
ENSORLG00020018671	usb1	80	50.224	ENSLACG00000000105	USB1	76	51.121	Latimeria_chalumnae
ENSORLG00020018671	usb1	82	58.036	ENSLOCG00000000465	usb1	79	58.036	Lepisosteus_oculatus
ENSORLG00020018671	usb1	99	39.711	ENSLAFG00000002267	USB1	84	41.739	Loxodonta_africana
ENSORLG00020018671	usb1	99	47.778	ENSMFAG00000003926	USB1	94	48.193	Macaca_fascicularis
ENSORLG00020018671	usb1	99	47.778	ENSMMUG00000022669	USB1	94	48.193	Macaca_mulatta
ENSORLG00020018671	usb1	99	47.407	ENSMNEG00000042487	USB1	94	47.791	Macaca_nemestrina
ENSORLG00020018671	usb1	99	47.778	ENSMLEG00000028756	USB1	94	48.193	Mandrillus_leucophaeus
ENSORLG00020018671	usb1	99	70.504	ENSMAMG00000015092	usb1	86	76.050	Mastacembelus_armatus
ENSORLG00020018671	usb1	96	70.656	ENSMZEG00005010008	usb1	88	73.171	Maylandia_zebra
ENSORLG00020018671	usb1	99	47.059	ENSMAUG00000007832	Usb1	84	51.339	Mesocricetus_auratus
ENSORLG00020018671	usb1	82	51.339	ENSMICG00000004900	USB1	93	46.304	Microcebus_murinus
ENSORLG00020018671	usb1	99	47.426	ENSMOCG00000022647	Usb1	84	51.786	Microtus_ochrogaster
ENSORLG00020018671	usb1	83	72.321	ENSMMOG00000000490	usb1	87	72.321	Mola_mola
ENSORLG00020018671	usb1	79	51.628	ENSMODG00000014067	USB1	84	51.339	Monodelphis_domestica
ENSORLG00020018671	usb1	94	71.429	ENSMALG00000005930	usb1	93	71.264	Monopterus_albus
ENSORLG00020018671	usb1	99	47.426	MGP_CAROLIEiJ_G0031421	Usb1	99	48.214	Mus_caroli
ENSORLG00020018671	usb1	99	47.059	ENSMUSG00000031792	Usb1	99	48.214	Mus_musculus
ENSORLG00020018671	usb1	84	51.316	MGP_PahariEiJ_G0023019	Usb1	100	49.573	Mus_pahari
ENSORLG00020018671	usb1	99	47.426	MGP_SPRETEiJ_G0032540	Usb1	85	50.877	Mus_spretus
ENSORLG00020018671	usb1	89	46.939	ENSMPUG00000004684	USB1	88	46.939	Mustela_putorius_furo
ENSORLG00020018671	usb1	82	51.786	ENSMLUG00000007400	USB1	97	51.786	Myotis_lucifugus
ENSORLG00020018671	usb1	99	47.810	ENSNGAG00000009703	Usb1	83	52.232	Nannospalax_galili
ENSORLG00020018671	usb1	96	64.865	ENSNBRG00000008747	usb1	100	73.832	Neolamprologus_brichardi
ENSORLG00020018671	usb1	92	48.207	ENSNLEG00000003340	USB1	92	49.130	Nomascus_leucogenys
ENSORLG00020018671	usb1	99	48.339	ENSODEG00000016214	USB1	85	51.982	Octodon_degus
ENSORLG00020018671	usb1	99	70.144	ENSONIG00000011063	usb1	88	74.286	Oreochromis_niloticus
ENSORLG00020018671	usb1	85	49.785	ENSOANG00000012118	USB1	97	49.785	Ornithorhynchus_anatinus
ENSORLG00020018671	usb1	100	96.691	ENSORLG00000012479	usb1	100	96.691	Oryzias_latipes
ENSORLG00020018671	usb1	100	97.048	ENSORLG00015009679	usb1	100	97.048	Oryzias_latipes_hsok
ENSORLG00020018671	usb1	94	90.196	ENSOMEG00000012930	usb1	93	89.883	Oryzias_melastigma
ENSORLG00020018671	usb1	99	44.444	ENSOGAG00000003273	USB1	83	48.214	Otolemur_garnettii
ENSORLG00020018671	usb1	91	46.614	ENSOARG00000001107	USB1	96	46.614	Ovis_aries
ENSORLG00020018671	usb1	99	47.407	ENSPPAG00000042137	USB1	94	48.193	Pan_paniscus
ENSORLG00020018671	usb1	90	45.749	ENSPPRG00000024797	USB1	93	45.382	Panthera_pardus
ENSORLG00020018671	usb1	89	46.694	ENSPTIG00000007506	USB1	89	46.694	Panthera_tigris_altaica
ENSORLG00020018671	usb1	99	45.185	ENSPTRG00000008172	USB1	100	52.336	Pan_troglodytes
ENSORLG00020018671	usb1	99	47.778	ENSPANG00000025138	USB1	94	48.193	Papio_anubis
ENSORLG00020018671	usb1	83	61.778	ENSPKIG00000015109	usb1	76	61.778	Paramormyrops_kingsleyae
ENSORLG00020018671	usb1	82	43.096	ENSPSIG00000004305	USB1	100	43.096	Pelodiscus_sinensis
ENSORLG00020018671	usb1	84	65.198	ENSPMGG00000017725	usb1	87	65.198	Periophthalmus_magnuspinnatus
ENSORLG00020018671	usb1	99	45.848	ENSPEMG00000016183	Usb1	82	50.446	Peromyscus_maniculatus_bairdii
ENSORLG00020018671	usb1	82	49.778	ENSPMAG00000000462	usb1	95	49.778	Petromyzon_marinus
ENSORLG00020018671	usb1	100	69.314	ENSPFOG00000011130	usb1	87	75.104	Poecilia_formosa
ENSORLG00020018671	usb1	100	68.953	ENSPLAG00000009820	usb1	87	74.689	Poecilia_latipinna
ENSORLG00020018671	usb1	100	70.036	ENSPMEG00000006402	usb1	87	75.104	Poecilia_mexicana
ENSORLG00020018671	usb1	88	68.852	ENSPREG00000001047	usb1	88	73.394	Poecilia_reticulata
ENSORLG00020018671	usb1	92	46.032	ENSPPYG00000007401	USB1	92	46.753	Pongo_abelii
ENSORLG00020018671	usb1	99	47.037	ENSPCOG00000022612	USB1	93	45.914	Propithecus_coquereli
ENSORLG00020018671	usb1	99	45.926	ENSPVAG00000004613	USB1	86	49.107	Pteropus_vampyrus
ENSORLG00020018671	usb1	100	66.786	ENSPNYG00000022262	usb1	88	73.171	Pundamilia_nyererei
ENSORLG00020018671	usb1	87	60.593	ENSPNAG00000011736	usb1	80	60.593	Pygocentrus_nattereri
ENSORLG00020018671	usb1	99	47.794	ENSRNOG00000013216	Usb1	84	51.786	Rattus_norvegicus
ENSORLG00020018671	usb1	99	45.185	ENSRBIG00000044466	USB1	100	51.869	Rhinopithecus_bieti
ENSORLG00020018671	usb1	99	47.778	ENSRROG00000029211	USB1	94	48.193	Rhinopithecus_roxellana
ENSORLG00020018671	usb1	99	48.148	ENSSBOG00000029362	USB1	94	48.193	Saimiri_boliviensis_boliviensis
ENSORLG00020018671	usb1	80	49.315	ENSSHAG00000006993	USB1	89	50.000	Sarcophilus_harrisii
ENSORLG00020018671	usb1	83	62.832	ENSSFOG00015023663	usb1	71	62.832	Scleropages_formosus
ENSORLG00020018671	usb1	93	69.403	ENSSMAG00000015834	usb1	91	69.403	Scophthalmus_maximus
ENSORLG00020018671	usb1	85	78.166	ENSSDUG00000002949	usb1	85	78.166	Seriola_dumerili
ENSORLG00020018671	usb1	88	76.987	ENSSLDG00000014174	usb1	85	76.987	Seriola_lalandi_dorsalis
ENSORLG00020018671	usb1	79	52.804	ENSSPUG00000006741	USB1	100	52.804	Sphenodon_punctatus
ENSORLG00020018671	usb1	99	71.127	ENSSPAG00000007484	usb1	86	76.955	Stegastes_partitus
ENSORLG00020018671	usb1	99	46.715	ENSSSCG00000002807	USB1	87	49.362	Sus_scrofa
ENSORLG00020018671	usb1	77	55.924	ENSTGUG00000004792	USB1	86	55.204	Taeniopygia_guttata
ENSORLG00020018671	usb1	99	68.889	ENSTRUG00000021069	usb1	91	71.138	Takifugu_rubripes
ENSORLG00020018671	usb1	99	57.934	ENSTNIG00000000626	usb1	83	63.677	Tetraodon_nigroviridis
ENSORLG00020018671	usb1	82	37.054	ENSTBEG00000001507	USB1	97	37.054	Tupaia_belangeri
ENSORLG00020018671	usb1	82	50.893	ENSUAMG00000016823	USB1	93	47.390	Ursus_americanus
ENSORLG00020018671	usb1	79	50.467	ENSUMAG00000021369	USB1	100	50.467	Ursus_maritimus
ENSORLG00020018671	usb1	99	44.610	ENSVVUG00000023700	USB1	98	45.455	Vulpes_vulpes
ENSORLG00020018671	usb1	78	55.140	ENSXETG00000013795	usb1	89	54.260	Xenopus_tropicalis
ENSORLG00020018671	usb1	89	74.689	ENSXMAG00000024687	usb1	71	74.689	Xiphophorus_maculatus