EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020019144 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: RNA-binding protein 4
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Minus strand
Length: 9018 bases
Position: chr14:6503923-6512940
Accession: 101157077
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020033237	RRM_5	PF13893.6	9.8e-12	1	2
ENSORLP00020033237	RRM_5	PF13893.6	9.8e-12	2	2
ENSORLP00020018180	RRM_5	PF13893.6	1e-11	1	2
ENSORLP00020018180	RRM_5	PF13893.6	1e-11	2	2
ENSORLP00020033241	RRM_5	PF13893.6	8.7e-11	1	2
ENSORLP00020033241	RRM_5	PF13893.6	8.7e-11	2	2
ENSORLP00020018180	RRM_1	PF00076.22	8e-34	1	2
ENSORLP00020018180	RRM_1	PF00076.22	8e-34	2	2
ENSORLP00020033237	RRM_1	PF00076.22	1e-33	1	2
ENSORLP00020033237	RRM_1	PF00076.22	1e-33	2	2
ENSORLP00020033241	RRM_1	PF00076.22	2.4e-33	1	2
ENSORLP00020033241	RRM_1	PF00076.22	2.4e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020026966	-	2294	-	ENSORLP00020018180	515 (aa)	-	UPI0002A499E9
ENSORLT00020026919	-	1632	-	ENSORLP00020033241	543 (aa)	-	-
ENSORLT00020026911	-	1729	-	ENSORLP00020033237	560 (aa)	XP_020564355	UPI0009DB53C6

Gene Model

Click here to download ENSORLG00020019144's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020019144's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020019144	-	74	47.699	ENSORLG00020005551	rbm14b	80	47.799

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020019144	-	99	86.564	ENSAPOG00000003380	-	99	87.044	Acanthochromis_polyacanthus
ENSORLG00020019144	-	74	61.957	ENSAPOG00000021712	rbm14b	73	62.182	Acanthochromis_polyacanthus
ENSORLG00020019144	-	99	86.731	ENSACIG00000021173	-	99	87.020	Amphilophus_citrinellus
ENSORLG00020019144	-	72	61.957	ENSACIG00000000381	rbm14b	65	62.182	Amphilophus_citrinellus
ENSORLG00020019144	-	74	61.957	ENSAOCG00000008941	rbm14b	82	55.970	Amphiprion_ocellaris
ENSORLG00020019144	-	100	87.356	ENSAOCG00000001659	-	100	87.614	Amphiprion_ocellaris
ENSORLG00020019144	-	74	61.957	ENSAPEG00000003161	rbm14b	82	55.750	Amphiprion_percula
ENSORLG00020019144	-	99	87.669	ENSAPEG00000016988	-	100	87.477	Amphiprion_percula
ENSORLG00020019144	-	73	61.232	ENSATEG00000003034	rbm14b	78	57.935	Anabas_testudineus
ENSORLG00020019144	-	100	86.042	ENSATEG00000009700	-	99	85.475	Anabas_testudineus
ENSORLG00020019144	-	72	61.957	ENSACLG00000014355	rbm14b	64	62.182	Astatotilapia_calliptera
ENSORLG00020019144	-	100	86.286	ENSACLG00000009112	-	98	86.380	Astatotilapia_calliptera
ENSORLG00020019144	-	72	58.562	ENSAMXG00000031225	rbm14b	71	58.562	Astyanax_mexicanus
ENSORLG00020019144	-	73	60.253	ENSAMXG00000007233	rbm14a	83	59.506	Astyanax_mexicanus
ENSORLG00020019144	-	100	80.381	ENSCSEG00000019690	-	100	81.159	Cynoglossus_semilaevis
ENSORLG00020019144	-	72	51.620	ENSCSEG00000000357	rbm14b	80	52.403	Cynoglossus_semilaevis
ENSORLG00020019144	-	74	48.218	ENSCVAG00000013776	rbm14b	84	48.760	Cyprinodon_variegatus
ENSORLG00020019144	-	100	82.857	ENSCVAG00000014858	-	100	83.514	Cyprinodon_variegatus
ENSORLG00020019144	-	70	60.440	ENSDARG00000103834	rbm14b	64	61.172	Danio_rerio
ENSORLG00020019144	-	73	59.021	ENSDARG00000012723	rbm14a	81	58.690	Danio_rerio
ENSORLG00020019144	-	70	63.806	ENSELUG00000004690	rbm14b	71	63.569	Esox_lucius
ENSORLG00020019144	-	88	55.332	ENSELUG00000023633	rbm14a	94	54.930	Esox_lucius
ENSORLG00020019144	-	100	82.197	ENSFHEG00000020913	-	100	83.144	Fundulus_heteroclitus
ENSORLG00020019144	-	72	47.335	ENSFHEG00000021265	rbm14b	82	48.945	Fundulus_heteroclitus
ENSORLG00020019144	-	72	77.984	ENSGMOG00000010840	-	79	77.188	Gadus_morhua
ENSORLG00020019144	-	74	61.071	ENSGAFG00000001924	rbm14b	70	61.733	Gambusia_affinis
ENSORLG00020019144	-	100	82.824	ENSGAFG00000004455	-	100	83.015	Gambusia_affinis
ENSORLG00020019144	-	94	83.514	ENSGACG00000020440	-	95	84.848	Gasterosteus_aculeatus
ENSORLG00020019144	-	72	61.957	ENSHBUG00000016754	rbm14b	64	62.182	Haplochromis_burtoni
ENSORLG00020019144	-	100	87.048	ENSHBUG00000003665	-	98	86.380	Haplochromis_burtoni
ENSORLG00020019144	-	79	53.901	ENSHCOG00000012571	rbm14b	99	66.038	Hippocampus_comes
ENSORLG00020019144	-	100	74.624	ENSHCOG00000004071	-	100	75.895	Hippocampus_comes
ENSORLG00020019144	-	70	60.662	ENSIPUG00000009089	rbm14b	88	47.908	Ictalurus_punctatus
ENSORLG00020019144	-	73	53.155	ENSIPUG00000021256	rbm14a	83	53.041	Ictalurus_punctatus
ENSORLG00020019144	-	74	61.594	ENSKMAG00000020444	rbm14b	70	60.993	Kryptolebias_marmoratus
ENSORLG00020019144	-	99	83.172	ENSKMAG00000008514	-	99	83.012	Kryptolebias_marmoratus
ENSORLG00020019144	-	73	62.409	ENSLBEG00000027934	rbm14b	62	62.182	Labrus_bergylta
ENSORLG00020019144	-	99	84.526	ENSLBEG00000001217	-	100	84.771	Labrus_bergylta
ENSORLG00020019144	-	73	61.852	ENSMAMG00000014394	rbm14b	62	62.082	Mastacembelus_armatus
ENSORLG00020019144	-	100	83.460	ENSMAMG00000021313	-	100	83.725	Mastacembelus_armatus
ENSORLG00020019144	-	100	87.048	ENSMZEG00005001201	-	100	86.594	Maylandia_zebra
ENSORLG00020019144	-	72	61.957	ENSMZEG00005020834	rbm14b	65	62.182	Maylandia_zebra
ENSORLG00020019144	-	52	57.299	ENSMMOG00000012912	rbm14b	87	42.857	Mola_mola
ENSORLG00020019144	-	99	82.472	ENSMMOG00000014501	-	100	81.768	Mola_mola
ENSORLG00020019144	-	69	56.150	ENSMALG00000015445	rbm14b	85	56.091	Monopterus_albus
ENSORLG00020019144	-	99	86.042	ENSNBRG00000004960	-	100	85.432	Neolamprologus_brichardi
ENSORLG00020019144	-	72	61.957	ENSNBRG00000003378	rbm14b	65	62.182	Neolamprologus_brichardi
ENSORLG00020019144	-	94	82.875	ENSONIG00000008557	-	95	84.681	Oreochromis_niloticus
ENSORLG00020019144	-	73	56.234	ENSONIG00000013035	rbm14b	82	58.186	Oreochromis_niloticus
ENSORLG00020019144	-	100	100.000	ENSORLG00000001900	-	100	100.000	Oryzias_latipes
ENSORLG00020019144	-	74	47.699	ENSORLG00000008051	rbm14b	83	47.521	Oryzias_latipes
ENSORLG00020019144	-	74	47.490	ENSORLG00015022683	rbm14b	83	47.314	Oryzias_latipes_hsok
ENSORLG00020019144	-	100	100.000	ENSORLG00015000082	-	100	100.000	Oryzias_latipes_hsok
ENSORLG00020019144	-	78	98.137	ENSOMEG00000006508	-	96	96.000	Oryzias_melastigma
ENSORLG00020019144	-	72	54.922	ENSOMEG00000000910	rbm14b	78	54.962	Oryzias_melastigma
ENSORLG00020019144	-	72	50.331	ENSPKIG00000009078	rbm14b	85	49.563	Paramormyrops_kingsleyae
ENSORLG00020019144	-	80	79.710	ENSPMGG00000018869	-	93	82.432	Periophthalmus_magnuspinnatus
ENSORLG00020019144	-	74	60.068	ENSPMGG00000013064	rbm14b	69	60.274	Periophthalmus_magnuspinnatus
ENSORLG00020019144	-	100	83.588	ENSPFOG00000004843	-	100	84.160	Poecilia_formosa
ENSORLG00020019144	-	74	47.182	ENSPFOG00000003614	rbm14b	83	48.225	Poecilia_formosa
ENSORLG00020019144	-	74	46.347	ENSPLAG00000001395	rbm14b	83	47.808	Poecilia_latipinna
ENSORLG00020019144	-	100	83.588	ENSPLAG00000017359	-	100	84.160	Poecilia_latipinna
ENSORLG00020019144	-	74	46.764	ENSPMEG00000012911	rbm14b	83	47.808	Poecilia_mexicana
ENSORLG00020019144	-	100	83.588	ENSPMEG00000004894	-	100	84.574	Poecilia_mexicana
ENSORLG00020019144	-	68	47.333	ENSPREG00000003013	rbm14b	83	47.059	Poecilia_reticulata
ENSORLG00020019144	-	100	83.779	ENSPREG00000007274	-	100	84.160	Poecilia_reticulata
ENSORLG00020019144	-	100	86.286	ENSPNYG00000015906	-	100	86.594	Pundamilia_nyererei
ENSORLG00020019144	-	72	61.957	ENSPNYG00000023605	rbm14b	65	62.182	Pundamilia_nyererei
ENSORLG00020019144	-	73	56.204	ENSPNAG00000012473	rbm14a	85	55.582	Pygocentrus_nattereri
ENSORLG00020019144	-	65	60.073	ENSPNAG00000001977	rbm14b	83	48.085	Pygocentrus_nattereri
ENSORLG00020019144	-	70	50.343	ENSSFOG00015023796	rbm14b	84	49.342	Scleropages_formosus
ENSORLG00020019144	-	100	85.468	ENSSMAG00000002055	-	100	84.909	Scophthalmus_maximus
ENSORLG00020019144	-	73	60.751	ENSSMAG00000004522	rbm14b	82	60.959	Scophthalmus_maximus
ENSORLG00020019144	-	72	61.957	ENSSDUG00000007975	rbm14b	76	62.182	Seriola_dumerili
ENSORLG00020019144	-	99	83.513	ENSSDUG00000020756	-	100	84.865	Seriola_dumerili
ENSORLG00020019144	-	72	61.957	ENSSLDG00000006472	rbm14b	76	62.182	Seriola_lalandi_dorsalis
ENSORLG00020019144	-	99	83.066	ENSSLDG00000006311	-	100	84.409	Seriola_lalandi_dorsalis
ENSORLG00020019144	-	74	61.957	ENSSPAG00000004231	rbm14b	68	62.182	Stegastes_partitus
ENSORLG00020019144	-	99	88.100	ENSSPAG00000010825	-	99	87.956	Stegastes_partitus
ENSORLG00020019144	-	73	62.182	ENSTRUG00000005716	rbm14b	69	62.182	Takifugu_rubripes
ENSORLG00020019144	-	100	80.577	ENSTRUG00000009504	-	94	80.153	Takifugu_rubripes
ENSORLG00020019144	-	91	75.711	ENSTNIG00000000058	-	100	73.650	Tetraodon_nigroviridis
ENSORLG00020019144	-	69	53.619	ENSTNIG00000006844	rbm14b	79	53.401	Tetraodon_nigroviridis
ENSORLG00020019144	-	99	82.688	ENSXCOG00000006825	-	99	83.130	Xiphophorus_couchianus
ENSORLG00020019144	-	74	46.764	ENSXMAG00000008390	rbm14b	83	47.808	Xiphophorus_maculatus
ENSORLG00020019144	-	100	83.588	ENSXMAG00000000338	-	100	84.574	Xiphophorus_maculatus