EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020019565 (Gene tree)
Gene ID: -
Gene Symbol: prdm12b
Alias: -
Full Name: PR domain containing 12b
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 3883 bases
Position: chr12:11529775-11533657
Accession: ZDB-GENE-041114-172
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020018610	zf-C2H2	PF00096.26	7.5e-13	1	2
ENSORLP00020018610	zf-C2H2	PF00096.26	7.5e-13	2	2
ENSORLP00020018610	zf-met	PF12874.7	8.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020027484	-	1909	-	ENSORLP00020018610	381 (aa)	-	-

Gene Model

Click here to download ENSORLG00020019565's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020019565's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020019565	prdm12b	71	38.298	ENSORLG00020018051	prdm5	93	42.105
ENSORLG00020019565	prdm12b	99	77.919	ENSORLG00020013167	-	100	77.665

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020019565	prdm12b	91	80.980	ENSG00000130711	PRDM12	89	80.814	Homo_sapiens
ENSORLG00020019565	prdm12b	99	89.583	ENSAPOG00000016051	prdm12b	100	89.583	Acanthochromis_polyacanthus
ENSORLG00020019565	prdm12b	99	66.842	ENSAPOG00000018234	-	100	66.842	Acanthochromis_polyacanthus
ENSORLG00020019565	prdm12b	89	80.294	ENSAMEG00000016234	PRDM12	99	80.000	Ailuropoda_melanoleuca
ENSORLG00020019565	prdm12b	99	88.684	ENSACIG00000019578	prdm12b	100	87.632	Amphilophus_citrinellus
ENSORLG00020019565	prdm12b	99	78.061	ENSACIG00000005193	-	100	78.061	Amphilophus_citrinellus
ENSORLG00020019565	prdm12b	99	89.764	ENSAOCG00000015040	prdm12b	100	90.026	Amphiprion_ocellaris
ENSORLG00020019565	prdm12b	99	88.451	ENSAPEG00000015092	prdm12b	100	88.189	Amphiprion_percula
ENSORLG00020019565	prdm12b	100	71.930	ENSAPEG00000022849	-	100	72.180	Amphiprion_percula
ENSORLG00020019565	prdm12b	99	80.879	ENSATEG00000014595	-	100	80.879	Anabas_testudineus
ENSORLG00020019565	prdm12b	94	79.609	ENSANAG00000020616	PRDM12	97	80.403	Aotus_nancymaae
ENSORLG00020019565	prdm12b	99	75.373	ENSACLG00000007631	-	100	76.368	Astatotilapia_calliptera
ENSORLG00020019565	prdm12b	99	84.777	ENSACLG00000011876	prdm12b	100	83.727	Astatotilapia_calliptera
ENSORLG00020019565	prdm12b	99	80.840	ENSAMXG00000033665	prdm12b	100	80.840	Astyanax_mexicanus
ENSORLG00020019565	prdm12b	99	78.068	ENSAMXG00000008540	PRDM12	100	77.368	Astyanax_mexicanus
ENSORLG00020019565	prdm12b	91	81.268	ENSBTAG00000023797	PRDM12	91	80.980	Bos_taurus
ENSORLG00020019565	prdm12b	91	80.980	ENSCJAG00000020540	PRDM12	92	80.115	Callithrix_jacchus
ENSORLG00020019565	prdm12b	80	80.263	ENSCAFG00000023076	PRDM12	99	74.556	Canis_familiaris
ENSORLG00020019565	prdm12b	91	80.692	ENSCAFG00020024046	PRDM12	100	75.591	Canis_lupus_dingo
ENSORLG00020019565	prdm12b	91	80.692	ENSCHIG00000025005	PRDM12	100	76.115	Capra_hircus
ENSORLG00020019565	prdm12b	94	76.257	ENSCPOG00000005901	PRDM12	99	78.035	Cavia_porcellus
ENSORLG00020019565	prdm12b	91	80.980	ENSCCAG00000037485	PRDM12	91	80.115	Cebus_capucinus
ENSORLG00020019565	prdm12b	91	80.980	ENSCATG00000020327	PRDM12	91	80.115	Cercocebus_atys
ENSORLG00020019565	prdm12b	91	80.115	ENSCLAG00000005499	PRDM12	90	80.115	Chinchilla_lanigera
ENSORLG00020019565	prdm12b	91	80.980	ENSCSAG00000014756	PRDM12	100	75.066	Chlorocebus_sabaeus
ENSORLG00020019565	prdm12b	100	76.640	ENSCPBG00000022628	PRDM12	100	75.591	Chrysemys_picta_bellii
ENSORLG00020019565	prdm12b	91	81.268	ENSCGRG00001015005	Prdm12	90	80.980	Cricetulus_griseus_chok1gshd
ENSORLG00020019565	prdm12b	99	87.368	ENSCVAG00000017166	prdm12b	100	87.105	Cyprinodon_variegatus
ENSORLG00020019565	prdm12b	99	78.462	ENSCVAG00000000944	-	100	78.462	Cyprinodon_variegatus
ENSORLG00020019565	prdm12b	99	80.789	ENSDARG00000007430	prdm12b	100	80.526	Danio_rerio
ENSORLG00020019565	prdm12b	91	80.692	ENSDNOG00000042302	PRDM12	91	80.403	Dasypus_novemcinctus
ENSORLG00020019565	prdm12b	93	63.200	ENSEBUG00000016780	prdm12b	73	68.769	Eptatretus_burgeri
ENSORLG00020019565	prdm12b	94	79.330	ENSEASG00005008472	PRDM12	91	80.692	Equus_asinus_asinus
ENSORLG00020019565	prdm12b	94	79.330	ENSECAG00000005933	PRDM12	90	81.395	Equus_caballus
ENSORLG00020019565	prdm12b	99	82.632	ENSELUG00000013674	PRDM12	100	82.105	Esox_lucius
ENSORLG00020019565	prdm12b	99	80.263	ENSELUG00000009905	prdm12b	100	80.263	Esox_lucius
ENSORLG00020019565	prdm12b	91	80.692	ENSFCAG00000043086	PRDM12	91	80.692	Felis_catus
ENSORLG00020019565	prdm12b	100	77.487	ENSFALG00000001445	PRDM12	89	75.853	Ficedula_albicollis
ENSORLG00020019565	prdm12b	99	74.631	ENSFHEG00000007746	-	100	74.129	Fundulus_heteroclitus
ENSORLG00020019565	prdm12b	99	86.126	ENSFHEG00000003944	prdm12b	100	86.911	Fundulus_heteroclitus
ENSORLG00020019565	prdm12b	99	83.333	ENSGMOG00000011797	prdm12b	100	81.771	Gadus_morhua
ENSORLG00020019565	prdm12b	100	77.487	ENSGALG00000003895	PRDM12	100	75.853	Gallus_gallus
ENSORLG00020019565	prdm12b	100	85.751	ENSGAFG00000010827	prdm12b	100	85.530	Gambusia_affinis
ENSORLG00020019565	prdm12b	100	86.945	ENSGACG00000016713	prdm12b	100	85.901	Gasterosteus_aculeatus
ENSORLG00020019565	prdm12b	100	76.640	ENSGAGG00000014083	PRDM12	100	75.591	Gopherus_agassizii
ENSORLG00020019565	prdm12b	91	80.692	ENSGGOG00000010568	PRDM12	89	80.523	Gorilla_gorilla
ENSORLG00020019565	prdm12b	99	75.373	ENSHBUG00000022537	-	93	76.368	Haplochromis_burtoni
ENSORLG00020019565	prdm12b	99	88.189	ENSHBUG00000022878	prdm12b	100	86.352	Haplochromis_burtoni
ENSORLG00020019565	prdm12b	91	80.403	ENSHGLG00000013939	PRDM12	99	75.397	Heterocephalus_glaber_female
ENSORLG00020019565	prdm12b	99	70.984	ENSHCOG00000021167	-	100	69.171	Hippocampus_comes
ENSORLG00020019565	prdm12b	90	88.439	ENSHCOG00000003663	prdm12b	100	81.061	Hippocampus_comes
ENSORLG00020019565	prdm12b	99	82.632	ENSIPUG00000017053	prdm12b	100	82.368	Ictalurus_punctatus
ENSORLG00020019565	prdm12b	99	77.105	ENSIPUG00000019544	PRDM12	100	76.842	Ictalurus_punctatus
ENSORLG00020019565	prdm12b	97	76.738	ENSSTOG00000005986	PRDM12	86	81.395	Ictidomys_tridecemlineatus
ENSORLG00020019565	prdm12b	91	80.692	ENSJJAG00000005424	Prdm12	100	80.692	Jaculus_jaculus
ENSORLG00020019565	prdm12b	99	82.266	ENSKMAG00000016921	prdm12b	100	81.728	Kryptolebias_marmoratus
ENSORLG00020019565	prdm12b	94	78.116	ENSKMAG00000021205	-	94	77.596	Kryptolebias_marmoratus
ENSORLG00020019565	prdm12b	99	86.528	ENSLBEG00000017769	prdm12b	100	85.974	Labrus_bergylta
ENSORLG00020019565	prdm12b	99	79.275	ENSLBEG00000007776	-	100	79.587	Labrus_bergylta
ENSORLG00020019565	prdm12b	99	77.105	ENSLACG00000017560	PRDM12	99	75.789	Latimeria_chalumnae
ENSORLG00020019565	prdm12b	99	81.201	ENSLOCG00000005429	prdm12b	100	81.723	Lepisosteus_oculatus
ENSORLG00020019565	prdm12b	91	80.692	ENSLAFG00000006979	PRDM12	89	80.229	Loxodonta_africana
ENSORLG00020019565	prdm12b	91	80.692	ENSMFAG00000040322	PRDM12	90	80.115	Macaca_fascicularis
ENSORLG00020019565	prdm12b	91	80.980	ENSMNEG00000037234	PRDM12	91	80.115	Macaca_nemestrina
ENSORLG00020019565	prdm12b	99	73.827	ENSMAMG00000018988	-	100	74.321	Mastacembelus_armatus
ENSORLG00020019565	prdm12b	99	88.421	ENSMAMG00000013212	prdm12b	100	87.368	Mastacembelus_armatus
ENSORLG00020019565	prdm12b	99	75.000	ENSMZEG00005000415	PRDM12	100	75.990	Maylandia_zebra
ENSORLG00020019565	prdm12b	97	78.591	ENSMGAG00000005438	PRDM12	92	81.871	Meleagris_gallopavo
ENSORLG00020019565	prdm12b	94	79.888	ENSMAUG00000013040	Prdm12	90	80.980	Mesocricetus_auratus
ENSORLG00020019565	prdm12b	94	79.444	ENSMICG00000015480	PRDM12	91	80.692	Microcebus_murinus
ENSORLG00020019565	prdm12b	99	78.042	ENSMOCG00000021026	Prdm12	90	81.268	Microtus_ochrogaster
ENSORLG00020019565	prdm12b	100	76.378	ENSMODG00000012108	PRDM12	92	81.579	Monodelphis_domestica
ENSORLG00020019565	prdm12b	85	84.098	ENSMALG00000021901	prdm12b	99	72.632	Monopterus_albus
ENSORLG00020019565	prdm12b	91	81.268	MGP_CAROLIEiJ_G0023414	Prdm12	100	75.654	Mus_caroli
ENSORLG00020019565	prdm12b	91	81.268	ENSMUSG00000079466	Prdm12	100	75.654	Mus_musculus
ENSORLG00020019565	prdm12b	91	81.268	MGP_PahariEiJ_G0024871	Prdm12	100	75.654	Mus_pahari
ENSORLG00020019565	prdm12b	91	81.268	MGP_SPRETEiJ_G0024331	Prdm12	100	75.654	Mus_spretus
ENSORLG00020019565	prdm12b	90	81.686	ENSNGAG00000018480	Prdm12	94	80.692	Nannospalax_galili
ENSORLG00020019565	prdm12b	99	70.951	ENSNBRG00000024312	-	100	71.208	Neolamprologus_brichardi
ENSORLG00020019565	prdm12b	99	87.927	ENSNBRG00000006727	prdm12b	100	86.877	Neolamprologus_brichardi
ENSORLG00020019565	prdm12b	100	68.766	ENSMEUG00000003828	PRDM12	92	73.099	Notamacropus_eugenii
ENSORLG00020019565	prdm12b	91	80.692	ENSOPRG00000008680	PRDM12	100	80.692	Ochotona_princeps
ENSORLG00020019565	prdm12b	94	78.711	ENSODEG00000016282	PRDM12	61	81.105	Octodon_degus
ENSORLG00020019565	prdm12b	64	74.590	ENSOANG00000001043	PRDM12	100	71.605	Ornithorhynchus_anatinus
ENSORLG00020019565	prdm12b	83	80.380	ENSOCUG00000008241	PRDM12	100	78.116	Oryctolagus_cuniculus
ENSORLG00020019565	prdm12b	99	77.411	ENSORLG00000017558	-	100	77.411	Oryzias_latipes
ENSORLG00020019565	prdm12b	100	98.950	ENSORLG00000007114	prdm12b	100	98.950	Oryzias_latipes
ENSORLG00020019565	prdm12b	99	77.411	ENSORLG00015003435	-	100	77.411	Oryzias_latipes_hsok
ENSORLG00020019565	prdm12b	100	98.953	ENSORLG00015007621	prdm12b	100	98.953	Oryzias_latipes_hsok
ENSORLG00020019565	prdm12b	99	78.149	ENSOMEG00000007762	-	100	76.692	Oryzias_melastigma
ENSORLG00020019565	prdm12b	100	96.364	ENSOMEG00000004134	prdm12b	100	96.364	Oryzias_melastigma
ENSORLG00020019565	prdm12b	91	80.692	ENSOGAG00000007557	PRDM12	99	80.692	Otolemur_garnettii
ENSORLG00020019565	prdm12b	80	79.605	ENSPPAG00000031506	-	99	77.742	Pan_paniscus
ENSORLG00020019565	prdm12b	98	71.123	ENSPPRG00000023024	PRDM12	91	71.123	Panthera_pardus
ENSORLG00020019565	prdm12b	91	80.980	ENSPTRG00000021475	PRDM12	89	80.814	Pan_troglodytes
ENSORLG00020019565	prdm12b	91	80.980	ENSPTRG00000043324	-	89	80.814	Pan_troglodytes
ENSORLG00020019565	prdm12b	91	80.980	ENSPANG00000025967	PRDM12	91	80.115	Papio_anubis
ENSORLG00020019565	prdm12b	96	75.616	ENSPKIG00000004305	PRDM12	94	79.532	Paramormyrops_kingsleyae
ENSORLG00020019565	prdm12b	99	81.579	ENSPKIG00000007228	prdm12b	100	81.316	Paramormyrops_kingsleyae
ENSORLG00020019565	prdm12b	100	76.903	ENSPSIG00000006739	PRDM12	100	75.853	Pelodiscus_sinensis
ENSORLG00020019565	prdm12b	100	86.089	ENSPMGG00000008867	prdm12b	100	86.089	Periophthalmus_magnuspinnatus
ENSORLG00020019565	prdm12b	91	79.656	ENSPMGG00000002356	-	87	80.000	Periophthalmus_magnuspinnatus
ENSORLG00020019565	prdm12b	95	78.904	ENSPEMG00000009969	Prdm12	92	80.627	Peromyscus_maniculatus_bairdii
ENSORLG00020019565	prdm12b	100	76.378	ENSPCIG00000024119	PRDM12	92	81.579	Phascolarctos_cinereus
ENSORLG00020019565	prdm12b	99	86.649	ENSPFOG00000019841	prdm12b	100	86.126	Poecilia_formosa
ENSORLG00020019565	prdm12b	100	84.794	ENSPLAG00000016626	prdm12b	100	85.052	Poecilia_latipinna
ENSORLG00020019565	prdm12b	96	85.829	ENSPMEG00000016698	prdm12b	99	85.791	Poecilia_mexicana
ENSORLG00020019565	prdm12b	95	73.046	ENSPREG00000003211	-	94	72.507	Poecilia_reticulata
ENSORLG00020019565	prdm12b	100	84.576	ENSPREG00000015073	prdm12b	100	84.833	Poecilia_reticulata
ENSORLG00020019565	prdm12b	94	79.609	ENSPPYG00000019694	PRDM12	93	81.105	Pongo_abelii
ENSORLG00020019565	prdm12b	91	80.692	ENSPCOG00000022255	PRDM12	90	80.692	Propithecus_coquereli
ENSORLG00020019565	prdm12b	91	80.403	ENSPVAG00000001511	PRDM12	90	80.403	Pteropus_vampyrus
ENSORLG00020019565	prdm12b	99	75.000	ENSPNYG00000013589	-	100	75.990	Pundamilia_nyererei
ENSORLG00020019565	prdm12b	99	87.927	ENSPNYG00000009607	prdm12b	100	87.402	Pundamilia_nyererei
ENSORLG00020019565	prdm12b	99	81.842	ENSPNAG00000024532	prdm12b	100	81.842	Pygocentrus_nattereri
ENSORLG00020019565	prdm12b	99	78.553	ENSPNAG00000013396	PRDM12	100	78.811	Pygocentrus_nattereri
ENSORLG00020019565	prdm12b	91	81.268	ENSRNOG00000009218	Prdm12	100	75.654	Rattus_norvegicus
ENSORLG00020019565	prdm12b	88	81.138	ENSRBIG00000042712	PRDM12	90	79.942	Rhinopithecus_bieti
ENSORLG00020019565	prdm12b	89	81.953	ENSRROG00000043554	PRDM12	100	81.361	Rhinopithecus_roxellana
ENSORLG00020019565	prdm12b	100	76.178	ENSSHAG00000015972	PRDM12	92	81.341	Sarcophilus_harrisii
ENSORLG00020019565	prdm12b	99	86.923	ENSSMAG00000003754	prdm12b	100	86.118	Scophthalmus_maximus
ENSORLG00020019565	prdm12b	99	88.114	ENSSDUG00000023498	prdm12b	100	87.339	Seriola_dumerili
ENSORLG00020019565	prdm12b	99	81.039	ENSSDUG00000019071	-	100	80.519	Seriola_dumerili
ENSORLG00020019565	prdm12b	99	76.440	ENSSLDG00000013562	-	100	76.501	Seriola_lalandi_dorsalis
ENSORLG00020019565	prdm12b	99	89.062	ENSSLDG00000009557	prdm12b	100	88.021	Seriola_lalandi_dorsalis
ENSORLG00020019565	prdm12b	100	76.640	ENSSPUG00000013424	PRDM12	100	75.591	Sphenodon_punctatus
ENSORLG00020019565	prdm12b	99	88.714	ENSSPAG00000018824	prdm12b	100	88.714	Stegastes_partitus
ENSORLG00020019565	prdm12b	99	71.465	ENSSPAG00000022420	-	100	70.437	Stegastes_partitus
ENSORLG00020019565	prdm12b	91	80.692	ENSSSCG00000005703	PRDM12	100	75.591	Sus_scrofa
ENSORLG00020019565	prdm12b	99	84.073	ENSTRUG00000018659	prdm12b	100	84.073	Takifugu_rubripes
ENSORLG00020019565	prdm12b	99	77.225	ENSTRUG00000013239	-	100	76.440	Takifugu_rubripes
ENSORLG00020019565	prdm12b	99	74.479	ENSTNIG00000005859	-	99	72.917	Tetraodon_nigroviridis
ENSORLG00020019565	prdm12b	99	85.302	ENSTNIG00000009020	prdm12b	99	85.302	Tetraodon_nigroviridis
ENSORLG00020019565	prdm12b	91	80.692	ENSUAMG00000009653	PRDM12	91	80.692	Ursus_americanus
ENSORLG00020019565	prdm12b	91	80.692	ENSVVUG00000027662	PRDM12	78	81.395	Vulpes_vulpes
ENSORLG00020019565	prdm12b	100	85.640	ENSXCOG00000002836	prdm12b	100	85.379	Xiphophorus_couchianus
ENSORLG00020019565	prdm12b	99	76.601	ENSXMAG00000028012	-	100	75.802	Xiphophorus_maculatus
ENSORLG00020019565	prdm12b	99	86.387	ENSXMAG00000005537	prdm12b	100	86.126	Xiphophorus_maculatus