EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSORLG00020019607 (Gene tree)
Gene ID
-
Gene Symbol
lig4
Alias
-
Full Name
ligase IV%2C DNA%2C ATP-dependent
Gene Type
protein_coding
Species
Oryzias_latipes_hni
Status
putative
Strand
Plus strand
Length
21517 bases
Position
chr2:14646788-14668304
Accession
ZDB-GENE-070820-10
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSORLP00020018645RNA_ligasePF09414.104.4e-0911
ENSORLP00020033573RNA_ligasePF09414.104.4e-0911
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSORLT00020027533-3778-ENSORLP00020018645912 (aa)--
ENSORLT00020027580-3953-ENSORLP00020033573912 (aa)--
Gene Model
Click here to download ENSORLG00020019607's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020019607's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSORLG00020019607lig49965.165ENSG00000174405LIG410065.603Homo_sapiens
ENSORLG00020019607lig49985.714ENSAPOG00000000866lig49985.714Acanthochromis_polyacanthus
ENSORLG00020019607lig49963.239ENSAMEG00000019685LIG49963.239Ailuropoda_melanoleuca
ENSORLG00020019607lig49985.291ENSACIG00000018309lig49985.291Amphilophus_citrinellus
ENSORLG00020019607lig49985.495ENSAOCG00000011768lig49985.495Amphiprion_ocellaris
ENSORLG00020019607lig49985.714ENSAPEG00000017815lig49985.714Amphiprion_percula
ENSORLG00020019607lig49984.488ENSATEG00000005583lig49984.268Anabas_testudineus
ENSORLG00020019607lig49667.349ENSAPLG00000001673LIG49967.122Anas_platyrhynchos
ENSORLG00020019607lig49966.850ENSACAG00000014566LIG49966.850Anolis_carolinensis
ENSORLG00020019607lig49964.725ENSANAG00000012446LIG49964.505Aotus_nancymaae
ENSORLG00020019607lig49985.181ENSACLG00000027051lig49985.181Astatotilapia_calliptera
ENSORLG00020019607lig49977.802ENSAMXG00000008192lig49477.802Astyanax_mexicanus
ENSORLG00020019607lig49965.275ENSBTAG00000015868LIG49965.275Bos_taurus
ENSORLG00020019607lig49964.176ENSCJAG00000014689LIG49963.956Callithrix_jacchus
ENSORLG00020019607lig49964.097ENSCAFG00000006031LIG49964.427Canis_familiaris
ENSORLG00020019607lig49964.097ENSCAFG00020021230LIG49964.427Canis_lupus_dingo
ENSORLG00020019607lig49965.055ENSCHIG00000001019LIG49965.055Capra_hircus
ENSORLG00020019607lig49864.862ENSCAPG00000006284LIG49964.751Cavia_aperea
ENSORLG00020019607lig49964.505ENSCPOG00000014266LIG49964.396Cavia_porcellus
ENSORLG00020019607lig49964.505ENSCCAG00000019971LIG49964.396Cebus_capucinus
ENSORLG00020019607lig49964.790ENSCATG00000021075LIG49964.790Cercocebus_atys
ENSORLG00020019607lig49965.132ENSCLAG00000003376LIG49965.022Chinchilla_lanigera
ENSORLG00020019607lig49964.505ENSCSAG00000000211LIG49964.505Chlorocebus_sabaeus
ENSORLG00020019607lig49968.764ENSCPBG00000023291LIG410068.192Chrysemys_picta_bellii
ENSORLG00020019607lig46948.438ENSCING00000009536-9448.950Ciona_intestinalis
ENSORLG00020019607lig48345.609ENSCSAVG00000010336-9845.085Ciona_savignyi
ENSORLG00020019607lig49964.505ENSCANG00000005805LIG49964.505Colobus_angolensis_palliatus
ENSORLG00020019607lig49963.855ENSCGRG00001012072Lig49963.746Cricetulus_griseus_chok1gshd
ENSORLG00020019607lig49963.855ENSCGRG00000013417Lig49963.746Cricetulus_griseus_crigri
ENSORLG00020019607lig49782.227ENSCSEG00000013905lig49682.115Cynoglossus_semilaevis
ENSORLG00020019607lig49985.055ENSCVAG00000007896lig49985.055Cyprinodon_variegatus
ENSORLG00020019607lig49976.948ENSDARG00000060620lig49976.729Danio_rerio
ENSORLG00020019607lig49963.996ENSDNOG00000000513LIG49964.105Dasypus_novemcinctus
ENSORLG00020019607lig49965.121ENSDORG00000027303Lig49965.121Dipodomys_ordii
ENSORLG00020019607lig49230.891FBgn0030506Lig49330.665Drosophila_melanogaster
ENSORLG00020019607lig49863.123ENSETEG00000015563LIG410063.123Echinops_telfairi
ENSORLG00020019607lig49944.699ENSEBUG00000014243lig49944.699Eptatretus_burgeri
ENSORLG00020019607lig49964.066ENSEASG00005022073LIG49964.066Equus_asinus_asinus
ENSORLG00020019607lig49964.066ENSECAG00000003257LIG49964.066Equus_caballus
ENSORLG00020019607lig49979.779ENSELUG00000006787lig49980.133Esox_lucius
ENSORLG00020019607lig49963.987ENSFCAG00000031985LIG49963.987Felis_catus
ENSORLG00020019607lig48868.936ENSFALG00000004214LIG49868.688Ficedula_albicollis
ENSORLG00020019607lig49964.066ENSFDAG00000008973LIG49963.846Fukomys_damarensis
ENSORLG00020019607lig49984.556ENSFHEG00000007398lig49084.556Fundulus_heteroclitus
ENSORLG00020019607lig48677.110ENSGMOG00000012843lig49977.110Gadus_morhua
ENSORLG00020019607lig410065.830ENSGALG00000016854LIG410065.830Gallus_gallus
ENSORLG00020019607lig49884.205ENSGAFG00000019779lig49683.533Gambusia_affinis
ENSORLG00020019607lig49981.848ENSGACG00000014135lig49981.848Gasterosteus_aculeatus
ENSORLG00020019607lig49964.945ENSGGOG00000027771LIG49964.945Gorilla_gorilla
ENSORLG00020019607lig49985.181ENSHBUG00000006245lig49985.181Haplochromis_burtoni
ENSORLG00020019607lig49964.396ENSHGLG00000000718LIG49964.176Heterocephalus_glaber_female
ENSORLG00020019607lig49964.396ENSHGLG00100003265LIG49964.176Heterocephalus_glaber_male
ENSORLG00020019607lig49979.628ENSHCOG00000012010lig49979.628Hippocampus_comes
ENSORLG00020019607lig410076.232ENSIPUG00000013748lig410076.232Ictalurus_punctatus
ENSORLG00020019607lig49965.461ENSSTOG00000024303LIG49965.461Ictidomys_tridecemlineatus
ENSORLG00020019607lig49964.145ENSJJAG00000006750Lig49964.254Jaculus_jaculus
ENSORLG00020019607lig49981.778ENSKMAG00000001149lig49981.778Kryptolebias_marmoratus
ENSORLG00020019607lig49184.458ENSLBEG00000014578lig410084.458Labrus_bergylta
ENSORLG00020019607lig49967.689ENSLACG00000003282LIG49967.689Latimeria_chalumnae
ENSORLG00020019607lig49971.382ENSLOCG00000008901lig49871.053Lepisosteus_oculatus
ENSORLG00020019607lig49963.706ENSLAFG00000031152LIG49963.706Loxodonta_africana
ENSORLG00020019607lig49964.505ENSMFAG00000037235LIG49964.505Macaca_fascicularis
ENSORLG00020019607lig49964.396ENSMMUG00000008874LIG49964.396Macaca_mulatta
ENSORLG00020019607lig49964.505ENSMNEG00000023575LIG49964.505Macaca_nemestrina
ENSORLG00020019607lig49964.396ENSMLEG00000026720LIG49964.396Mandrillus_leucophaeus
ENSORLG00020019607lig49984.759ENSMAMG00000008472lig49984.759Mastacembelus_armatus
ENSORLG00020019607lig49985.071ENSMZEG00005001855lig49985.071Maylandia_zebra
ENSORLG00020019607lig410065.721ENSMGAG00000015532LIG410065.721Meleagris_gallopavo
ENSORLG00020019607lig49963.816ENSMOCG00000019000Lig49963.487Microtus_ochrogaster
ENSORLG00020019607lig49984.211ENSMMOG00000004390lig49984.211Mola_mola
ENSORLG00020019607lig49965.011ENSMODG00000025064LIG49965.011Monodelphis_domestica
ENSORLG00020019607lig49983.224ENSMALG00000008555lig49982.895Monopterus_albus
ENSORLG00020019607lig49964.474MGP_CAROLIEiJ_G0030809Lig49964.364Mus_caroli
ENSORLG00020019607lig49964.035ENSMUSG00000049717Lig49963.816Mus_musculus
ENSORLG00020019607lig49963.816MGP_PahariEiJ_G0021270Lig49963.706Mus_pahari
ENSORLG00020019607lig49964.583MGP_SPRETEiJ_G0031917Lig49964.364Mus_spretus
ENSORLG00020019607lig49964.254ENSMPUG00000018675LIG49964.254Mustela_putorius_furo
ENSORLG00020019607lig49964.286ENSMLUG00000001267LIG49964.066Myotis_lucifugus
ENSORLG00020019607lig49964.474ENSNGAG00000013258Lig49964.364Nannospalax_galili
ENSORLG00020019607lig49984.962ENSNBRG00000021252lig49984.962Neolamprologus_brichardi
ENSORLG00020019607lig49964.396ENSNLEG00000007888LIG49964.396Nomascus_leucogenys
ENSORLG00020019607lig49963.656ENSOPRG00000005765LIG49963.656Ochotona_princeps
ENSORLG00020019607lig49964.427ENSODEG00000019683LIG49964.207Octodon_degus
ENSORLG00020019607lig49985.291ENSONIG00000011969lig49885.071Oreochromis_niloticus
ENSORLG00020019607lig49964.145ENSOCUG00000015734LIG49964.145Oryctolagus_cuniculus
ENSORLG00020019607lig410098.794ENSORLG00000004041lig410098.794Oryzias_latipes
ENSORLG00020019607lig410099.013ENSORLG00015017754lig410099.013Oryzias_latipes_hsok
ENSORLG00020019607lig47693.198ENSOMEG00000003459lig49993.198Oryzias_melastigma
ENSORLG00020019607lig49964.192ENSOGAG00000032120LIG49964.192Otolemur_garnettii
ENSORLG00020019607lig48368.477ENSOARG00000005590LIG49968.477Ovis_aries
ENSORLG00020019607lig49964.945ENSPPAG00000032998LIG49964.945Pan_paniscus
ENSORLG00020019607lig49964.427ENSPPRG00000017804LIG49964.427Panthera_pardus
ENSORLG00020019607lig49964.317ENSPTIG00000010051LIG49964.317Panthera_tigris_altaica
ENSORLG00020019607lig49965.055ENSPTRG00000006025LIG49965.055Pan_troglodytes
ENSORLG00020019607lig49964.901ENSPANG00000007562LIG49964.901Papio_anubis
ENSORLG00020019607lig410075.685ENSPKIG00000011645lig49975.465Paramormyrops_kingsleyae
ENSORLG00020019607lig49967.798ENSPSIG00000001504LIG49967.798Pelodiscus_sinensis
ENSORLG00020019607lig49879.665ENSPMGG00000013486lig49978.798Periophthalmus_magnuspinnatus
ENSORLG00020019607lig49963.337ENSPEMG00000000076Lig49963.227Peromyscus_maniculatus_bairdii
ENSORLG00020019607lig49964.474ENSPCIG00000021882LIG49964.474Phascolarctos_cinereus
ENSORLG00020019607lig49885.078ENSPFOG00000000797lig410084.153Poecilia_formosa
ENSORLG00020019607lig49884.967ENSPLAG00000001196lig410084.044Poecilia_latipinna
ENSORLG00020019607lig49884.967ENSPMEG00000021353lig410084.044Poecilia_mexicana
ENSORLG00020019607lig49884.521ENSPREG00000007323lig410083.607Poecilia_reticulata
ENSORLG00020019607lig49964.176ENSPPYG00000005540LIG49964.176Pongo_abelii
ENSORLG00020019607lig49963.846ENSPVAG00000016403LIG49963.846Pteropus_vampyrus
ENSORLG00020019607lig49985.181ENSPNYG00000009660lig49985.181Pundamilia_nyererei
ENSORLG00020019607lig49979.560ENSPNAG00000028056lig49979.560Pygocentrus_nattereri
ENSORLG00020019607lig49979.560ENSPNAG00000028069LIG49979.560Pygocentrus_nattereri
ENSORLG00020019607lig49963.706ENSRNOG00000014605Lig49963.596Rattus_norvegicus
ENSORLG00020019607lig49963.846ENSRBIG00000039962LIG49963.846Rhinopithecus_bieti
ENSORLG00020019607lig49964.615ENSRROG00000006040LIG49964.615Rhinopithecus_roxellana
ENSORLG00020019607lig49964.505ENSSBOG00000019029LIG49964.286Saimiri_boliviensis_boliviensis
ENSORLG00020019607lig49962.281ENSSHAG00000009525LIG49962.281Sarcophilus_harrisii
ENSORLG00020019607lig49976.619ENSSFOG00015012835lig49976.400Scleropages_formosus
ENSORLG00020019607lig49979.890ENSSMAG00000011267lig49979.560Scophthalmus_maximus
ENSORLG00020019607lig49983.515ENSSDUG00000010343lig49983.406Seriola_dumerili
ENSORLG00020019607lig49982.533ENSSLDG00000003239lig49982.205Seriola_lalandi_dorsalis
ENSORLG00020019607lig49864.939ENSSARG00000006573LIG49964.939Sorex_araneus
ENSORLG00020019607lig49268.090ENSSPUG00000002444LIG410068.090Sphenodon_punctatus
ENSORLG00020019607lig49984.649ENSSPAG00000001609lig49984.649Stegastes_partitus
ENSORLG00020019607lig49964.474ENSSSCG00000009540LIG49964.583Sus_scrofa
ENSORLG00020019607lig49966.704ENSTGUG00000010795LIG49966.593Taeniopygia_guttata
ENSORLG00020019607lig49982.785ENSTRUG00000009984lig49982.785Takifugu_rubripes
ENSORLG00020019607lig49981.538ENSTNIG00000010348lig49981.538Tetraodon_nigroviridis
ENSORLG00020019607lig49964.505ENSTBEG00000017741LIG49964.505Tupaia_belangeri
ENSORLG00020019607lig49963.956ENSTTRG00000012660LIG49963.956Tursiops_truncatus
ENSORLG00020019607lig49863.315ENSUAMG00000003773LIG49963.315Ursus_americanus
ENSORLG00020019607lig49966.375ENSXETG00000002654lig49966.375Xenopus_tropicalis
ENSORLG00020019607lig49884.727ENSXCOG00000017401lig410083.825Xiphophorus_couchianus
ENSORLG00020019607lig49885.061ENSXMAG00000015142lig49984.153Xiphophorus_maculatus

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