EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020019784 (Gene tree)
Gene ID: -
Gene Symbol: srl
Alias: -
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 10699 bases
Position: chr8:10802991-10813689
Accession: ZDB-GENE-061110-91
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020033661	MMR_HSR1	PF01926.23	1.9e-08	1	1
ENSORLP00020018810	MMR_HSR1	PF01926.23	2.1e-08	1	1
ENSORLP00020018805	MMR_HSR1	PF01926.23	2.1e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020027717	-	1830	-	ENSORLP00020033661	489 (aa)	-	-
ENSORLT00020034900	-	2055	-	ENSORLP00020018810	564 (aa)	-	-
ENSORLT00020027742	-	2019	-	ENSORLP00020018805	552 (aa)	-	-

Gene Model

Click here to download ENSORLG00020019784's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020019784's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020019784	srl	75	33.875	ENSORLG00020001245	ehd4	74	31.981
ENSORLG00020019784	srl	78	33.933	ENSORLG00020017051	ehd2b	74	33.014
ENSORLG00020019784	srl	74	33.518	ENSORLG00020002121	ehd3	73	32.840
ENSORLG00020019784	srl	74	31.868	ENSORLG00020018451	ehd1a	70	31.282
ENSORLG00020019784	srl	81	76.904	ENSORLG00020018173	SRL	97	75.225
ENSORLG00020019784	srl	77	32.199	ENSORLG00020013250	-	74	30.935

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020019784	srl	79	84.536	ENSG00000185739	SRL	99	82.791	Homo_sapiens
ENSORLG00020019784	srl	81	79.442	ENSAPOG00000012432	SRL	99	77.878	Acanthochromis_polyacanthus
ENSORLG00020019784	srl	85	96.178	ENSAPOG00000018093	srl	100	96.178	Acanthochromis_polyacanthus
ENSORLG00020019784	srl	79	85.013	ENSAMEG00000010862	SRL	50	82.127	Ailuropoda_melanoleuca
ENSORLG00020019784	srl	80	78.920	ENSACIG00000015419	SRL	99	75.670	Amphilophus_citrinellus
ENSORLG00020019784	srl	82	97.778	ENSACIG00000015799	srl	99	97.778	Amphilophus_citrinellus
ENSORLG00020019784	srl	79	97.423	ENSAOCG00000007574	srl	100	97.235	Amphiprion_ocellaris
ENSORLG00020019784	srl	81	79.747	ENSAOCG00000017049	SRL	97	78.378	Amphiprion_ocellaris
ENSORLG00020019784	srl	81	75.381	ENSAPEG00000006533	SRL	96	75.450	Amphiprion_percula
ENSORLG00020019784	srl	85	96.480	ENSAPEG00000006911	srl	100	96.480	Amphiprion_percula
ENSORLG00020019784	srl	85	96.066	ENSATEG00000024315	srl	100	96.066	Anabas_testudineus
ENSORLG00020019784	srl	81	77.396	ENSATEG00000009643	SRL	52	76.754	Anabas_testudineus
ENSORLG00020019784	srl	96	73.636	ENSACAG00000016380	SRL	99	74.317	Anolis_carolinensis
ENSORLG00020019784	srl	81	77.150	ENSACLG00000024674	SRL	54	78.250	Astatotilapia_calliptera
ENSORLG00020019784	srl	85	97.101	ENSACLG00000027685	srl	100	97.101	Astatotilapia_calliptera
ENSORLG00020019784	srl	90	88.431	ENSAMXG00000018789	srl	98	88.431	Astyanax_mexicanus
ENSORLG00020019784	srl	75	81.148	ENSAMXG00000038693	SRL	100	74.172	Astyanax_mexicanus
ENSORLG00020019784	srl	79	86.010	ENSBTAG00000001078	SRL	57	81.678	Bos_taurus
ENSORLG00020019784	srl	79	84.536	ENSCJAG00000019750	SRL	100	79.281	Callithrix_jacchus
ENSORLG00020019784	srl	79	85.013	ENSCAFG00000019233	SRL	85	80.659	Canis_familiaris
ENSORLG00020019784	srl	79	85.013	ENSCAFG00020025024	SRL	56	81.015	Canis_lupus_dingo
ENSORLG00020019784	srl	79	86.010	ENSCHIG00000017927	SRL	57	81.678	Capra_hircus
ENSORLG00020019784	srl	85	79.493	ENSTSYG00000007919	SRL	99	83.488	Carlito_syrichta
ENSORLG00020019784	srl	79	85.052	ENSCPOG00000012643	SRL	100	79.661	Cavia_porcellus
ENSORLG00020019784	srl	79	84.278	ENSCCAG00000032646	SRL	100	84.169	Cebus_capucinus
ENSORLG00020019784	srl	79	84.755	ENSCATG00000032227	-	100	79.281	Cercocebus_atys
ENSORLG00020019784	srl	79	85.052	ENSCLAG00000016242	SRL	100	79.873	Chinchilla_lanigera
ENSORLG00020019784	srl	79	85.714	ENSCHOG00000001618	SRL	52	85.714	Choloepus_hoffmanni
ENSORLG00020019784	srl	80	85.233	ENSCPBG00000026371	SRL	99	79.503	Chrysemys_picta_bellii
ENSORLG00020019784	srl	74	63.712	ENSCING00000005231	-	95	59.813	Ciona_intestinalis
ENSORLG00020019784	srl	79	84.536	ENSCANG00000035872	SRL	99	82.791	Colobus_angolensis_palliatus
ENSORLG00020019784	srl	79	85.788	ENSCGRG00001016630	Srl	100	80.508	Cricetulus_griseus_chok1gshd
ENSORLG00020019784	srl	79	85.788	ENSCGRG00000005458	Srl	100	80.508	Cricetulus_griseus_crigri
ENSORLG00020019784	srl	89	69.636	ENSCSEG00000011866	SRL	99	69.838	Cynoglossus_semilaevis
ENSORLG00020019784	srl	85	95.319	ENSCSEG00000016151	srl	100	95.319	Cynoglossus_semilaevis
ENSORLG00020019784	srl	81	77.475	ENSCVAG00000022465	SRL	61	76.139	Cyprinodon_variegatus
ENSORLG00020019784	srl	85	94.813	ENSCVAG00000003513	srl	100	94.813	Cyprinodon_variegatus
ENSORLG00020019784	srl	78	78.385	ENSDARG00000112959	CABZ01072309.1	100	78.646	Danio_rerio
ENSORLG00020019784	srl	85	89.834	ENSDARG00000104587	srl	100	89.834	Danio_rerio
ENSORLG00020019784	srl	79	85.013	ENSDNOG00000011643	SRL	54	81.057	Dasypus_novemcinctus
ENSORLG00020019784	srl	79	85.052	ENSDORG00000014807	Srl	100	80.297	Dipodomys_ordii
ENSORLG00020019784	srl	76	65.508	ENSEBUG00000015937	srl	94	65.508	Eptatretus_burgeri
ENSORLG00020019784	srl	79	85.233	ENSEASG00005000942	SRL	55	81.236	Equus_asinus_asinus
ENSORLG00020019784	srl	85	79.661	ENSECAG00000024219	SRL	99	79.661	Equus_caballus
ENSORLG00020019784	srl	85	86.653	ENSELUG00000015616	srl	100	86.653	Esox_lucius
ENSORLG00020019784	srl	79	84.755	ENSFCAG00000022075	SRL	100	78.647	Felis_catus
ENSORLG00020019784	srl	79	86.269	ENSFALG00000004328	SRL	63	82.955	Ficedula_albicollis
ENSORLG00020019784	srl	79	85.567	ENSFDAG00000006199	SRL	100	80.720	Fukomys_damarensis
ENSORLG00020019784	srl	85	95.436	ENSFHEG00000011239	srl	100	95.436	Fundulus_heteroclitus
ENSORLG00020019784	srl	81	78.680	ENSFHEG00000011854	SRL	99	77.477	Fundulus_heteroclitus
ENSORLG00020019784	srl	80	93.112	ENSGMOG00000014954	srl	100	91.850	Gadus_morhua
ENSORLG00020019784	srl	80	85.459	ENSGALG00000038884	SRL	99	80.255	Gallus_gallus
ENSORLG00020019784	srl	85	95.436	ENSGAFG00000000010	srl	100	95.436	Gambusia_affinis
ENSORLG00020019784	srl	81	79.695	ENSGAFG00000016984	SRL	99	78.604	Gambusia_affinis
ENSORLG00020019784	srl	81	95.824	ENSGACG00000011332	srl	100	95.824	Gasterosteus_aculeatus
ENSORLG00020019784	srl	79	84.755	ENSGGOG00000011312	-	100	79.070	Gorilla_gorilla
ENSORLG00020019784	srl	85	97.101	ENSHBUG00000007581	srl	100	97.101	Haplochromis_burtoni
ENSORLG00020019784	srl	81	77.396	ENSHBUG00000015710	SRL	58	74.573	Haplochromis_burtoni
ENSORLG00020019784	srl	79	85.309	ENSHGLG00000015271	SRL	100	80.297	Heterocephalus_glaber_female
ENSORLG00020019784	srl	79	85.309	ENSHGLG00100019378	SRL	100	80.297	Heterocephalus_glaber_male
ENSORLG00020019784	srl	86	94.969	ENSHCOG00000008687	srl	99	96.652	Hippocampus_comes
ENSORLG00020019784	srl	81	75.862	ENSHCOG00000001012	SRL	50	74.945	Hippocampus_comes
ENSORLG00020019784	srl	85	90.269	ENSIPUG00000012513	srl	100	90.269	Ictalurus_punctatus
ENSORLG00020019784	srl	79	70.649	ENSIPUG00000011609	SRL	95	69.495	Ictalurus_punctatus
ENSORLG00020019784	srl	79	85.530	ENSSTOG00000021151	-	100	79.873	Ictidomys_tridecemlineatus
ENSORLG00020019784	srl	85	80.932	ENSJJAG00000016400	Srl	100	80.932	Jaculus_jaculus
ENSORLG00020019784	srl	79	78.866	ENSKMAG00000019537	SRL	100	76.871	Kryptolebias_marmoratus
ENSORLG00020019784	srl	84	94.915	ENSKMAG00000014115	srl	95	94.915	Kryptolebias_marmoratus
ENSORLG00020019784	srl	85	95.754	ENSLBEG00000026643	srl	100	95.754	Labrus_bergylta
ENSORLG00020019784	srl	83	74.510	ENSLBEG00000013811	SRL	95	76.471	Labrus_bergylta
ENSORLG00020019784	srl	85	81.573	ENSLACG00000002825	SRL	98	84.163	Latimeria_chalumnae
ENSORLG00020019784	srl	79	92.010	ENSLOCG00000002644	srl	94	89.616	Lepisosteus_oculatus
ENSORLG00020019784	srl	79	85.013	ENSLAFG00000006329	SRL	50	82.127	Loxodonta_africana
ENSORLG00020019784	srl	79	84.536	ENSMFAG00000037383	SRL	99	82.791	Macaca_fascicularis
ENSORLG00020019784	srl	79	84.755	ENSMNEG00000019236	-	95	80.931	Macaca_nemestrina
ENSORLG00020019784	srl	79	82.990	ENSMLEG00000032156	SRL	100	72.939	Mandrillus_leucophaeus
ENSORLG00020019784	srl	81	76.658	ENSMAMG00000013756	SRL	53	75.991	Mastacembelus_armatus
ENSORLG00020019784	srl	80	96.622	ENSMAMG00000023322	srl	96	96.018	Mastacembelus_armatus
ENSORLG00020019784	srl	85	97.101	ENSMZEG00005004548	srl	100	97.101	Maylandia_zebra
ENSORLG00020019784	srl	81	77.150	ENSMZEG00005004010	SRL	59	74.359	Maylandia_zebra
ENSORLG00020019784	srl	79	86.305	ENSMGAG00000009342	SRL	96	83.377	Meleagris_gallopavo
ENSORLG00020019784	srl	79	85.788	ENSMICG00000032307	SRL	100	79.704	Microcebus_murinus
ENSORLG00020019784	srl	85	79.661	ENSMOCG00000008208	Srl	100	79.661	Microtus_ochrogaster
ENSORLG00020019784	srl	81	78.392	ENSMMOG00000021572	SRL	99	74.725	Mola_mola
ENSORLG00020019784	srl	82	95.333	ENSMMOG00000013970	srl	100	95.333	Mola_mola
ENSORLG00020019784	srl	79	86.528	ENSMODG00000016380	-	50	83.673	Monodelphis_domestica
ENSORLG00020019784	srl	85	94.681	ENSMALG00000005039	srl	100	94.681	Monopterus_albus
ENSORLG00020019784	srl	80	77.749	ENSMALG00000000670	SRL	98	77.804	Monopterus_albus
ENSORLG00020019784	srl	79	86.047	MGP_CAROLIEiJ_G0020400	Srl	100	81.356	Mus_caroli
ENSORLG00020019784	srl	79	86.047	ENSMUSG00000022519	Srl	100	81.356	Mus_musculus
ENSORLG00020019784	srl	79	86.047	MGP_SPRETEiJ_G0021294	Srl	100	81.356	Mus_spretus
ENSORLG00020019784	srl	79	85.013	ENSMPUG00000015025	SRL	55	80.931	Mustela_putorius_furo
ENSORLG00020019784	srl	79	85.271	ENSMLUG00000030733	SRL	57	81.818	Myotis_lucifugus
ENSORLG00020019784	srl	79	85.567	ENSNGAG00000019741	Srl	100	80.932	Nannospalax_galili
ENSORLG00020019784	srl	81	76.904	ENSNBRG00000002422	SRL	57	75.682	Neolamprologus_brichardi
ENSORLG00020019784	srl	85	96.603	ENSNBRG00000023775	srl	100	95.532	Neolamprologus_brichardi
ENSORLG00020019784	srl	79	84.536	ENSNLEG00000029051	SRL	100	73.784	Nomascus_leucogenys
ENSORLG00020019784	srl	79	85.233	ENSOPRG00000000477	-	53	75.330	Ochotona_princeps
ENSORLG00020019784	srl	79	85.567	ENSODEG00000013256	SRL	100	80.085	Octodon_degus
ENSORLG00020019784	srl	85	97.101	ENSONIG00000005192	srl	100	97.101	Oreochromis_niloticus
ENSORLG00020019784	srl	81	76.650	ENSORLG00000015064	SRL	97	75.000	Oryzias_latipes
ENSORLG00020019784	srl	88	99.598	ENSORLG00000008291	srl	100	99.598	Oryzias_latipes
ENSORLG00020019784	srl	81	76.904	ENSORLG00015019063	SRL	97	75.225	Oryzias_latipes_hsok
ENSORLG00020019784	srl	88	99.598	ENSORLG00015009342	srl	100	99.598	Oryzias_latipes_hsok
ENSORLG00020019784	srl	85	99.170	ENSOMEG00000010006	srl	100	99.170	Oryzias_melastigma
ENSORLG00020019784	srl	81	75.184	ENSOMEG00000005682	SRL	53	73.961	Oryzias_melastigma
ENSORLG00020019784	srl	79	84.755	ENSOGAG00000029266	SRL	55	80.617	Otolemur_garnettii
ENSORLG00020019784	srl	79	86.010	ENSOARG00000003074	SRL	56	82.000	Ovis_aries
ENSORLG00020019784	srl	79	84.755	ENSPPAG00000024919	-	99	82.791	Pan_paniscus
ENSORLG00020019784	srl	85	78.647	ENSPPRG00000010274	SRL	99	82.558	Panthera_pardus
ENSORLG00020019784	srl	85	78.647	ENSPTIG00000015162	SRL	99	82.558	Panthera_tigris_altaica
ENSORLG00020019784	srl	79	84.755	ENSPTRG00000007712	SRL	99	82.791	Pan_troglodytes
ENSORLG00020019784	srl	79	84.536	ENSPANG00000013804	SRL	98	80.879	Papio_anubis
ENSORLG00020019784	srl	88	77.347	ENSPKIG00000024974	SRL	97	77.347	Paramormyrops_kingsleyae
ENSORLG00020019784	srl	85	89.897	ENSPKIG00000006405	srl	100	89.897	Paramormyrops_kingsleyae
ENSORLG00020019784	srl	79	85.233	ENSPSIG00000008586	SRL	50	81.375	Pelodiscus_sinensis
ENSORLG00020019784	srl	79	77.835	ENSPMGG00000023505	-	100	75.621	Periophthalmus_magnuspinnatus
ENSORLG00020019784	srl	83	93.450	ENSPMGG00000021081	srl	97	94.469	Periophthalmus_magnuspinnatus
ENSORLG00020019784	srl	79	85.309	ENSPEMG00000015842	Srl	100	80.297	Peromyscus_maniculatus_bairdii
ENSORLG00020019784	srl	79	70.588	ENSPMAG00000004786	srl	99	67.963	Petromyzon_marinus
ENSORLG00020019784	srl	79	86.047	ENSPCIG00000012128	SRL	98	82.222	Phascolarctos_cinereus
ENSORLG00020019784	srl	90	94.653	ENSPFOG00000011408	srl	100	94.653	Poecilia_formosa
ENSORLG00020019784	srl	79	79.793	ENSPLAG00000002932	SRL	99	77.477	Poecilia_latipinna
ENSORLG00020019784	srl	83	94.541	ENSPLAG00000008017	srl	98	95.778	Poecilia_latipinna
ENSORLG00020019784	srl	88	96.907	ENSPMEG00000006745	srl	100	94.523	Poecilia_mexicana
ENSORLG00020019784	srl	82	75.000	ENSPMEG00000005890	SRL	61	74.730	Poecilia_mexicana
ENSORLG00020019784	srl	90	96.183	ENSPREG00000007751	srl	100	95.787	Poecilia_reticulata
ENSORLG00020019784	srl	81	79.188	ENSPREG00000000315	SRL	100	77.728	Poecilia_reticulata
ENSORLG00020019784	srl	79	84.536	ENSPPYG00000007053	SRL	98	84.248	Pongo_abelii
ENSORLG00020019784	srl	79	85.233	ENSPCAG00000003378	-	50	83.220	Procavia_capensis
ENSORLG00020019784	srl	79	85.309	ENSPCOG00000023135	SRL	99	83.488	Propithecus_coquereli
ENSORLG00020019784	srl	79	85.271	ENSPVAG00000006586	SRL	55	81.596	Pteropus_vampyrus
ENSORLG00020019784	srl	85	96.894	ENSPNYG00000001200	srl	100	96.894	Pundamilia_nyererei
ENSORLG00020019784	srl	81	77.150	ENSPNYG00000003423	SRL	58	74.359	Pundamilia_nyererei
ENSORLG00020019784	srl	87	71.816	ENSPNAG00000007361	-	91	75.737	Pygocentrus_nattereri
ENSORLG00020019784	srl	85	90.249	ENSPNAG00000023106	srl	100	90.249	Pygocentrus_nattereri
ENSORLG00020019784	srl	79	85.788	ENSRNOG00000005269	Srl	50	81.938	Rattus_norvegicus
ENSORLG00020019784	srl	79	84.755	ENSRBIG00000042358	SRL	50	80.617	Rhinopithecus_bieti
ENSORLG00020019784	srl	79	84.755	ENSSBOG00000029273	SRL	100	79.281	Saimiri_boliviensis_boliviensis
ENSORLG00020019784	srl	79	86.269	ENSSHAG00000011715	-	53	79.915	Sarcophilus_harrisii
ENSORLG00020019784	srl	85	90.702	ENSSFOG00015009773	srl	100	90.702	Scleropages_formosus
ENSORLG00020019784	srl	79	79.124	ENSSFOG00015021327	SRL	51	75.271	Scleropages_formosus
ENSORLG00020019784	srl	81	76.225	ENSSMAG00000002232	SRL	50	75.385	Scophthalmus_maximus
ENSORLG00020019784	srl	85	95.329	ENSSMAG00000016274	srl	100	95.329	Scophthalmus_maximus
ENSORLG00020019784	srl	80	97.297	ENSSDUG00000010808	srl	98	97.297	Seriola_dumerili
ENSORLG00020019784	srl	80	79.040	ENSSDUG00000009161	SRL	99	77.778	Seriola_dumerili
ENSORLG00020019784	srl	85	96.266	ENSSLDG00000022024	srl	100	96.266	Seriola_lalandi_dorsalis
ENSORLG00020019784	srl	80	78.325	ENSSLDG00000014601	SRL	100	78.070	Seriola_lalandi_dorsalis
ENSORLG00020019784	srl	79	85.013	ENSSPUG00000016859	SRL	99	81.514	Sphenodon_punctatus
ENSORLG00020019784	srl	85	96.281	ENSSPAG00000019105	srl	100	96.281	Stegastes_partitus
ENSORLG00020019784	srl	81	80.203	ENSSPAG00000014254	SRL	98	79.138	Stegastes_partitus
ENSORLG00020019784	srl	79	85.492	ENSSSCG00000007949	SRL	98	82.540	Sus_scrofa
ENSORLG00020019784	srl	79	86.305	ENSTGUG00000003951	-	97	83.182	Taeniopygia_guttata
ENSORLG00020019784	srl	74	86.188	ENSTGUG00000016121	-	100	86.188	Taeniopygia_guttata
ENSORLG00020019784	srl	85	95.532	ENSTRUG00000006005	srl	100	95.532	Takifugu_rubripes
ENSORLG00020019784	srl	81	77.919	ENSTRUG00000013310	SRL	55	78.282	Takifugu_rubripes
ENSORLG00020019784	srl	85	94.894	ENSTNIG00000009739	srl	100	94.894	Tetraodon_nigroviridis
ENSORLG00020019784	srl	79	85.013	ENSUAMG00000005701	SRL	55	82.127	Ursus_americanus
ENSORLG00020019784	srl	79	85.013	ENSUMAG00000002574	SRL	55	82.127	Ursus_maritimus
ENSORLG00020019784	srl	79	85.013	ENSVVUG00000016331	-	50	80.396	Vulpes_vulpes
ENSORLG00020019784	srl	85	78.465	ENSXETG00000017313	srl	98	81.674	Xenopus_tropicalis
ENSORLG00020019784	srl	81	79.442	ENSXCOG00000014584	SRL	100	77.605	Xiphophorus_couchianus
ENSORLG00020019784	srl	79	96.907	ENSXCOG00000010424	srl	97	96.217	Xiphophorus_couchianus
ENSORLG00020019784	srl	81	76.658	ENSXMAG00000027598	SRL	63	75.378	Xiphophorus_maculatus
ENSORLG00020019784	srl	88	96.907	ENSXMAG00000004625	srl	100	94.455	Xiphophorus_maculatus