EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSORLG00020021193 (Gene tree)
Gene ID
-
Gene Symbol
pabpc1l
Alias
-
Full Name
poly(A) binding protein%2C cytoplasmic 1-like
Gene Type
protein_coding
Species
Oryzias_latipes_hni
Status
putative
Strand
Plus strand
Length
11449 bases
Position
chr7:16244183-16255631
Accession
ZDB-GENE-030131-5836
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSORLP00020034557PABPPF00658.183.7e-2911
ENSORLP00020020108PABPPF00658.185.3e-2911
ENSORLP00020034565PABPPF00658.182.3e-2411
ENSORLP00020034557RRM_5PF13893.62.5e-0812
ENSORLP00020034557RRM_5PF13893.62.5e-0822
ENSORLP00020034565RRM_5PF13893.63.4e-0811
ENSORLP00020020108RRM_5PF13893.64.9e-0811
ENSORLP00020034565RRM_1PF00076.221.3e-8814
ENSORLP00020034565RRM_1PF00076.221.3e-8824
ENSORLP00020034565RRM_1PF00076.221.3e-8834
ENSORLP00020034565RRM_1PF00076.221.3e-8844
ENSORLP00020020108RRM_1PF00076.222e-8814
ENSORLP00020020108RRM_1PF00076.222e-8824
ENSORLP00020020108RRM_1PF00076.222e-8834
ENSORLP00020020108RRM_1PF00076.222e-8844
ENSORLP00020034557RRM_1PF00076.224.7e-8214
ENSORLP00020034557RRM_1PF00076.224.7e-8224
ENSORLP00020034557RRM_1PF00076.224.7e-8234
ENSORLP00020034557RRM_1PF00076.224.7e-8244
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSORLT00020029412-1719-ENSORLP00020034565572 (aa)--
ENSORLT00020029418-1860-ENSORLP00020020108619 (aa)--
ENSORLT00020029435-1491-ENSORLP00020034557496 (aa)--
Gene Model
Click here to download ENSORLG00020021193's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020021193's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSORLG00020021193pabpc1l5936.047ENSORLG00020003560celf5a5434.375
ENSORLG00020021193pabpc1l5334.884ENSORLG00020015261-5934.884
ENSORLG00020021193pabpc1l7531.061ENSORLG00020014277elavl48131.061
ENSORLG00020021193pabpc1l9974.194ENSORLG00020022398pabpc1a9874.194
ENSORLG00020021193pabpc1l7730.000ENSORLG00020004570elavl38930.000
ENSORLG00020021193pabpc1l6831.452ENSORLG00020012447-9631.452
ENSORLG00020021193pabpc1l10077.846ENSORLG00020018644pabpc49777.846
ENSORLG00020021193pabpc1l6234.247ENSORLG00020007978celf3a6434.247
ENSORLG00020021193pabpc1l6534.247ENSORLG00020008839celf3b7234.247
ENSORLG00020021193pabpc1l6236.047ENSORLG00020021262si:dkey-205h23.26134.247
ENSORLG00020021193pabpc1l7131.683ENSORLG00020022674RBMS36631.683
ENSORLG00020021193pabpc1l5834.884ENSORLG00020008454celf46030.556
ENSORLG00020021193pabpc1l9979.762ENSORLG00020022259-9868.312
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSORLG00020021193pabpc1l9972.662ENSG00000101104PABPC1L9976.852Homo_sapiens
ENSORLG00020021193pabpc1l9986.473ENSAPOG00000010842pabpc1l9986.473Acanthochromis_polyacanthus
ENSORLG00020021193pabpc1l9378.205ENSAMEG00000004099PABPC1L10063.707Ailuropoda_melanoleuca
ENSORLG00020021193pabpc1l10089.109ENSACIG00000021004-9991.646Amphilophus_citrinellus
ENSORLG00020021193pabpc1l10084.726ENSAOCG00000006167-10081.629Amphiprion_ocellaris
ENSORLG00020021193pabpc1l10086.133ENSAPEG00000010558-10084.670Amphiprion_percula
ENSORLG00020021193pabpc1l10090.588ENSATEG00000007428pabpc1l9989.720Anabas_testudineus
ENSORLG00020021193pabpc1l9976.102ENSAPLG00000008415PABPC1L9970.531Anas_platyrhynchos
ENSORLG00020021193pabpc1l9978.177ENSACAG00000011841PABPC1L9778.177Anolis_carolinensis
ENSORLG00020021193pabpc1l9971.127ENSANAG00000026826PABPC1L9771.127Aotus_nancymaae
ENSORLG00020021193pabpc1l10089.720ENSACLG00000024791pabpc1l10086.581Astatotilapia_calliptera
ENSORLG00020021193pabpc1l10080.093ENSAMXG00000013552pabpc1l9980.093Astyanax_mexicanus
ENSORLG00020021193pabpc1l7386.713ENSBTAG00000055300-10087.500Bos_taurus
ENSORLG00020021193pabpc1l7568.880ENSBTAG00000016849PABPC1L8862.199Bos_taurus
ENSORLG00020021193pabpc1l6980.537ENSCJAG00000038506-10080.460Callithrix_jacchus
ENSORLG00020021193pabpc1l9971.127ENSCJAG00000017628PABPC1L9771.127Callithrix_jacchus
ENSORLG00020021193pabpc1l9973.913ENSCAFG00000009573PABPC1L9973.913Canis_familiaris
ENSORLG00020021193pabpc1l9968.167ENSCAFG00020013828PABPC1L9967.846Canis_lupus_dingo
ENSORLG00020021193pabpc1l9773.005ENSCHIG00000025759PABPC1L9073.005Capra_hircus
ENSORLG00020021193pabpc1l9871.596ENSTSYG00000006645PABPC1L9771.596Carlito_syrichta
ENSORLG00020021193pabpc1l9767.102ENSCAPG00000014519PABPC1L9961.931Cavia_aperea
ENSORLG00020021193pabpc1l9968.750ENSCPOG00000013633PABPC1L9964.734Cavia_porcellus
ENSORLG00020021193pabpc1l9970.139ENSCCAG00000023338PABPC1L9770.657Cebus_capucinus
ENSORLG00020021193pabpc1l9976.250ENSCATG00000034065PABPC1L9772.066Cercocebus_atys
ENSORLG00020021193pabpc1l9970.024ENSCLAG00000005298PABPC1L9870.264Chinchilla_lanigera
ENSORLG00020021193pabpc1l9976.250ENSCSAG00000014242PABPC1L9771.831Chlorocebus_sabaeus
ENSORLG00020021193pabpc1l6984.733ENSCPBG00000007810-9184.733Chrysemys_picta_bellii
ENSORLG00020021193pabpc1l8378.177ENSCPBG00000017755-9979.412Chrysemys_picta_bellii
ENSORLG00020021193pabpc1l9777.215ENSCING00000002796-7477.215Ciona_intestinalis
ENSORLG00020021193pabpc1l9878.481ENSCSAVG00000004246-9666.098Ciona_savignyi
ENSORLG00020021193pabpc1l9977.215ENSCSAVG00000003102-10084.733Ciona_savignyi
ENSORLG00020021193pabpc1l9972.902ENSCANG00000037530PABPC1L9965.024Colobus_angolensis_palliatus
ENSORLG00020021193pabpc1l9866.355ENSCGRG00001021938Pabpc1l9866.355Cricetulus_griseus_chok1gshd
ENSORLG00020021193pabpc1l9866.355ENSCGRG00000007946Pabpc1l9866.355Cricetulus_griseus_crigri
ENSORLG00020021193pabpc1l10078.479ENSCSEG00000021295pabpc1l9978.479Cynoglossus_semilaevis
ENSORLG00020021193pabpc1l10091.807ENSCVAG00000015943-9993.893Cyprinodon_variegatus
ENSORLG00020021193pabpc1l9979.720ENSDARG00000002597pabpc1l8893.077Danio_rerio
ENSORLG00020021193pabpc1l9976.923ENSDNOG00000048450PABPC1L9968.395Dasypus_novemcinctus
ENSORLG00020021193pabpc1l9970.913ENSDORG00000001067Pabpc1l9770.913Dipodomys_ordii
ENSORLG00020021193pabpc1l9576.423ENSETEG00000009969PABPC1L7276.423Echinops_telfairi
ENSORLG00020021193pabpc1l7384.615ENSEASG00005023408-10085.119Equus_asinus_asinus
ENSORLG00020021193pabpc1l6674.684ENSEASG00005023407-6474.684Equus_asinus_asinus
ENSORLG00020021193pabpc1l8165.844ENSECAG00000040139-9662.406Equus_caballus
ENSORLG00020021193pabpc1l9971.807ENSEEUG00000005978PABPC1L9965.640Erinaceus_europaeus
ENSORLG00020021193pabpc1l10080.465ENSELUG00000001811pabpc1l9980.465Esox_lucius
ENSORLG00020021193pabpc1l9972.471ENSFCAG00000011692PABPC1L9872.471Felis_catus
ENSORLG00020021193pabpc1l8675.576ENSFALG00000005372PABPC1L8773.166Ficedula_albicollis
ENSORLG00020021193pabpc1l9970.813ENSFDAG00000008291PABPC1L9970.813Fukomys_damarensis
ENSORLG00020021193pabpc1l10089.953ENSFHEG00000003398pabpc1l9989.953Fundulus_heteroclitus
ENSORLG00020021193pabpc1l9985.714ENSGMOG00000004437pabpc1l9783.916Gadus_morhua
ENSORLG00020021193pabpc1l9976.275ENSGALG00000004123PABPC1L9980.048Gallus_gallus
ENSORLG00020021193pabpc1l10083.043ENSGAFG00000021057pabpc1l10081.763Gambusia_affinis
ENSORLG00020021193pabpc1l9988.152ENSGACG00000002792pabpc1l9988.152Gasterosteus_aculeatus
ENSORLG00020021193pabpc1l9976.905ENSGAGG00000000589PABPC1L9477.551Gopherus_agassizii
ENSORLG00020021193pabpc1l9972.662ENSGGOG00000004584PABPC1L9772.662Gorilla_gorilla
ENSORLG00020021193pabpc1l10089.486ENSHBUG00000006134pabpc1l10086.422Haplochromis_burtoni
ENSORLG00020021193pabpc1l10072.941ENSHGLG00000008434PABPC1L9969.930Heterocephalus_glaber_female
ENSORLG00020021193pabpc1l7086.928ENSHGLG00100019506-10085.955Heterocephalus_glaber_male
ENSORLG00020021193pabpc1l10072.941ENSHGLG00100012151PABPC1L9969.930Heterocephalus_glaber_male
ENSORLG00020021193pabpc1l10085.047ENSHCOG00000009270pabpc1l10085.047Hippocampus_comes
ENSORLG00020021193pabpc1l7161.006ENSIPUG00000006760-8862.069Ictalurus_punctatus
ENSORLG00020021193pabpc1l7161.006ENSIPUG00000006780-8562.069Ictalurus_punctatus
ENSORLG00020021193pabpc1l10082.353ENSIPUG00000012602pabpc1l10076.471Ictalurus_punctatus
ENSORLG00020021193pabpc1l9973.141ENSSTOG00000003739PABPC1L9873.141Ictidomys_tridecemlineatus
ENSORLG00020021193pabpc1l9954.198ENSJJAG00000022406Pabpc1l9854.198Jaculus_jaculus
ENSORLG00020021193pabpc1l10089.647ENSKMAG00000016847pabpc1l10087.097Kryptolebias_marmoratus
ENSORLG00020021193pabpc1l9890.571ENSLBEG00000010084pabpc1l10084.824Labrus_bergylta
ENSORLG00020021193pabpc1l9976.782ENSLACG00000005762PABPC1L9776.782Latimeria_chalumnae
ENSORLG00020021193pabpc1l9981.481ENSLOCG00000007519pabpc1l9781.481Lepisosteus_oculatus
ENSORLG00020021193pabpc1l9971.628ENSLAFG00000003553PABPC1L9971.628Loxodonta_africana
ENSORLG00020021193pabpc1l9978.205ENSMFAG00000040365PABPC1L9772.066Macaca_fascicularis
ENSORLG00020021193pabpc1l9873.684ENSMNEG00000032298PABPC1L9967.367Macaca_nemestrina
ENSORLG00020021193pabpc1l9976.250ENSMLEG00000043139PABPC1L9772.066Mandrillus_leucophaeus
ENSORLG00020021193pabpc1l9688.551ENSMAMG00000011854pabpc1l9788.551Mastacembelus_armatus
ENSORLG00020021193pabpc1l10089.720ENSMZEG00005023713pabpc1l10086.581Maylandia_zebra
ENSORLG00020021193pabpc1l9976.334ENSMGAG00000003674PABPC1L9776.334Meleagris_gallopavo
ENSORLG00020021193pabpc1l9864.692ENSMOCG00000013186Pabpc1l9864.692Microtus_ochrogaster
ENSORLG00020021193pabpc1l9988.551ENSMMOG00000020574-9888.551Mola_mola
ENSORLG00020021193pabpc1l9374.818ENSMODG00000016198PABPC1L9874.818Monodelphis_domestica
ENSORLG00020021193pabpc1l9687.028ENSMALG00000021622pabpc1l9987.028Monopterus_albus
ENSORLG00020021193pabpc1l9868.421MGP_CAROLIEiJ_G0024627Pabpc1l9960.165Mus_caroli
ENSORLG00020021193pabpc1l9968.421ENSMUSG00000054582Pabpc1l9960.165Mus_musculus
ENSORLG00020021193pabpc1l10067.599MGP_PahariEiJ_G0026071Pabpc1l10060.572Mus_pahari
ENSORLG00020021193pabpc1l9968.421MGP_SPRETEiJ_G0025549Pabpc1l9960.165Mus_spretus
ENSORLG00020021193pabpc1l9974.038ENSMPUG00000017646PABPC1L9968.218Mustela_putorius_furo
ENSORLG00020021193pabpc1l9868.182ENSMLUG00000006324PABPC1L9865.224Myotis_lucifugus
ENSORLG00020021193pabpc1l9962.379ENSNGAG00000010458Pabpc1l9767.285Nannospalax_galili
ENSORLG00020021193pabpc1l10092.727ENSNBRG00000016633pabpc1l10091.325Neolamprologus_brichardi
ENSORLG00020021193pabpc1l8472.222ENSMEUG00000007905-8965.756Notamacropus_eugenii
ENSORLG00020021193pabpc1l9976.923ENSOPRG00000011846PABPC1L9966.882Ochotona_princeps
ENSORLG00020021193pabpc1l9961.308ENSODEG00000015482PABPC1L9665.478Octodon_degus
ENSORLG00020021193pabpc1l6589.062ENSODEG00000002920-9780.000Octodon_degus
ENSORLG00020021193pabpc1l10089.252ENSONIG00000017314pabpc1l10086.581Oreochromis_niloticus
ENSORLG00020021193pabpc1l9062.167ENSOANG00000015793-10062.167Ornithorhynchus_anatinus
ENSORLG00020021193pabpc1l9971.801ENSOCUG00000003005PABPC1L9963.859Oryctolagus_cuniculus
ENSORLG00020021193pabpc1l100100.000ENSORLG00000010322pabpc1l100100.000Oryzias_latipes
ENSORLG00020021193pabpc1l10099.798ENSORLG00015017018pabpc1l10099.798Oryzias_latipes_hsok
ENSORLG00020021193pabpc1l10095.238ENSOMEG00000010789pabpc1l10090.687Oryzias_melastigma
ENSORLG00020021193pabpc1l9971.596ENSOGAG00000032999PABPC1L9871.596Otolemur_garnettii
ENSORLG00020021193pabpc1l9972.834ENSOARG00000004578PABPC1L9967.045Ovis_aries
ENSORLG00020021193pabpc1l9972.902ENSPPAG00000039677PABPC1L9772.066Pan_paniscus
ENSORLG00020021193pabpc1l7366.555ENSPPRG00000019327-9868.519Panthera_pardus
ENSORLG00020021193pabpc1l9972.471ENSPTIG00000006524PABPC1L9972.471Panthera_tigris_altaica
ENSORLG00020021193pabpc1l7276.254ENSPTRG00000013531PABPC1L9977.160Pan_troglodytes
ENSORLG00020021193pabpc1l9976.250ENSPANG00000018788PABPC1L9772.066Papio_anubis
ENSORLG00020021193pabpc1l10085.882ENSPKIG00000007322pabpc1l10076.763Paramormyrops_kingsleyae
ENSORLG00020021193pabpc1l6184.906ENSPKIG00000016810-9383.969Paramormyrops_kingsleyae
ENSORLG00020021193pabpc1l8376.699ENSPSIG00000013289PABPC1L9980.336Pelodiscus_sinensis
ENSORLG00020021193pabpc1l7393.158ENSPMGG00000023117pabpc1l9793.023Periophthalmus_magnuspinnatus
ENSORLG00020021193pabpc1l7684.021ENSPMGG00000023121-9184.021Periophthalmus_magnuspinnatus
ENSORLG00020021193pabpc1l9866.355ENSPEMG00000020671Pabpc1l9760.458Peromyscus_maniculatus_bairdii
ENSORLG00020021193pabpc1l10089.720ENSPFOG00000013241pabpc1l10086.581Poecilia_formosa
ENSORLG00020021193pabpc1l10089.286ENSPLAG00000017490-10086.262Poecilia_latipinna
ENSORLG00020021193pabpc1l7396.190ENSPLAG00000023686-9294.615Poecilia_latipinna
ENSORLG00020021193pabpc1l10089.720ENSPMEG00000007677pabpc1l10086.378Poecilia_mexicana
ENSORLG00020021193pabpc1l7396.190ENSPMEG00000009185-8894.615Poecilia_mexicana
ENSORLG00020021193pabpc1l7892.727ENSPREG00000015886pabpc1l9992.944Poecilia_reticulata
ENSORLG00020021193pabpc1l9972.662ENSPPYG00000011042PABPC1L9772.662Pongo_abelii
ENSORLG00020021193pabpc1l7384.615ENSPCAG00000011787-7585.938Procavia_capensis
ENSORLG00020021193pabpc1l9968.438ENSPCOG00000020630PABPC1L9872.535Propithecus_coquereli
ENSORLG00020021193pabpc1l9970.118ENSPVAG00000012663PABPC1L9870.118Pteropus_vampyrus
ENSORLG00020021193pabpc1l10090.239ENSPNYG00000004101pabpc1l10091.566Pundamilia_nyererei
ENSORLG00020021193pabpc1l10072.816ENSPNAG00000021248pabpc1l10070.541Pygocentrus_nattereri
ENSORLG00020021193pabpc1l9965.517ENSRNOG00000012750Pabpc1l9960.064Rattus_norvegicus
ENSORLG00020021193pabpc1l9972.662ENSRBIG00000035381PABPC1L9771.831Rhinopithecus_bieti
ENSORLG00020021193pabpc1l9976.250ENSRROG00000044498PABPC1L9771.596Rhinopithecus_roxellana
ENSORLG00020021193pabpc1l9971.362ENSSBOG00000009532-9771.362Saimiri_boliviensis_boliviensis
ENSORLG00020021193pabpc1l9971.010ENSSHAG00000011446PABPC1L10071.010Sarcophilus_harrisii
ENSORLG00020021193pabpc1l10080.420ENSSFOG00015017304pabpc1l9980.420Scleropages_formosus
ENSORLG00020021193pabpc1l10088.084ENSSMAG00000010516pabpc1l9894.574Scophthalmus_maximus
ENSORLG00020021193pabpc1l10090.931ENSSDUG00000014743pabpc1l9990.931Seriola_dumerili
ENSORLG00020021193pabpc1l9990.562ENSSLDG00000006981pabpc1l9891.121Seriola_lalandi_dorsalis
ENSORLG00020021193pabpc1l9976.498ENSSPUG00000004233PABPC1L9972.089Sphenodon_punctatus
ENSORLG00020021193pabpc1l10080.639ENSSPAG00000017137pabpc1l9880.639Stegastes_partitus
ENSORLG00020021193pabpc1l9970.776ENSSSCG00000007382PABPC1L9870.776Sus_scrofa
ENSORLG00020021193pabpc1l9974.944ENSTGUG00000005114PABPC1L9974.944Taeniopygia_guttata
ENSORLG00020021193pabpc1l9688.489ENSTRUG00000011085pabpc1l9688.489Takifugu_rubripes
ENSORLG00020021193pabpc1l9984.286ENSTNIG00000017903pabpc1l9881.804Tetraodon_nigroviridis
ENSORLG00020021193pabpc1l9976.779ENSTBEG00000002851PABPC1L7978.082Tupaia_belangeri
ENSORLG00020021193pabpc1l9371.154ENSTTRG00000007618PABPC1L10065.894Tursiops_truncatus
ENSORLG00020021193pabpc1l9967.979ENSUAMG00000017682PABPC1L9967.979Ursus_americanus
ENSORLG00020021193pabpc1l7674.359ENSUMAG00000025436PABPC1L9273.816Ursus_maritimus
ENSORLG00020021193pabpc1l9974.903ENSVVUG00000018939PABPC1L9974.903Vulpes_vulpes
ENSORLG00020021193pabpc1l9972.158ENSXETG00000022831pabpc1l9969.697Xenopus_tropicalis
ENSORLG00020021193pabpc1l10089.486ENSXCOG00000005459pabpc1l9990.071Xiphophorus_couchianus
ENSORLG00020021193pabpc1l10089.486ENSXMAG00000017135pabpc1l10085.942Xiphophorus_maculatus

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