EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020021891 (Gene tree)
Gene ID: -
Gene Symbol: chd6
Alias: -
Full Name: chromodomain-helicase-DNA-binding protein 6
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 65258 bases
Position: chr5:6837487-6902744
Accession: 101174417
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020035055	ResIII	PF04851.15	3.7e-08	1	1
ENSORLP00020035071	ResIII	PF04851.15	7e-07	1	1
ENSORLP00020035071	BRK	PF07533.16	2.2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020035823	-	14341	XM_023954827	ENSORLP00020035071	3446 (aa)	XP_023810595	-
ENSORLT00020030325	-	1575	-	ENSORLP00020035055	524 (aa)	-	-

Gene Model

Click here to download ENSORLG00020021891's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020021891's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020021891	chd6	95	75.502	ENSORLG00020020665	chd9	59	64.444
ENSORLG00020021891	chd6	72	37.358	ENSORLG00020003952	hells	72	39.728
ENSORLG00020021891	chd6	74	40.102	ENSORLG00020017679	smarca5	51	40.070
ENSORLG00020021891	chd6	71	40.369	ENSORLG00020005123	chd1l	90	38.484
ENSORLG00020021891	chd6	88	43.487	ENSORLG00020008387	chd3	58	43.419
ENSORLG00020021891	chd6	95	71.600	ENSORLG00020008031	chd8	60	58.384
ENSORLG00020021891	chd6	88	43.141	ENSORLG00020011739	-	54	38.143
ENSORLG00020021891	chd6	95	73.031	ENSORLG00020020002	chd7	65	58.298

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020021891	chd6	95	85.972	ENSG00000124177	CHD6	98	78.988	Homo_sapiens
ENSORLG00020021891	chd6	95	94.589	ENSAPOG00000013736	chd6	99	73.671	Acanthochromis_polyacanthus
ENSORLG00020021891	chd6	95	86.172	ENSAMEG00000009496	CHD6	80	71.644	Ailuropoda_melanoleuca
ENSORLG00020021891	chd6	95	94.589	ENSATEG00000005608	chd6	99	72.484	Anabas_testudineus
ENSORLG00020021891	chd6	95	87.174	ENSAPLG00000015592	CHD6	76	75.400	Anas_platyrhynchos
ENSORLG00020021891	chd6	94	79.150	ENSACAG00000006842	CHD6	77	69.940	Anolis_carolinensis
ENSORLG00020021891	chd6	99	84.571	ENSANAG00000037548	CHD6	96	84.571	Aotus_nancymaae
ENSORLG00020021891	chd6	95	88.577	ENSAMXG00000009576	chd6	92	63.488	Astyanax_mexicanus
ENSORLG00020021891	chd6	95	86.172	ENSBTAG00000005733	CHD6	77	71.171	Bos_taurus
ENSORLG00020021891	chd6	99	84.571	ENSCJAG00000017920	CHD6	96	84.571	Callithrix_jacchus
ENSORLG00020021891	chd6	95	86.172	ENSCAFG00000009236	CHD6	79	69.982	Canis_familiaris
ENSORLG00020021891	chd6	99	83.748	ENSCAFG00020012906	CHD6	96	83.748	Canis_lupus_dingo
ENSORLG00020021891	chd6	95	85.972	ENSCHIG00000017606	CHD6	73	74.366	Capra_hircus
ENSORLG00020021891	chd6	75	88.325	ENSTSYG00000014635	CHD6	76	76.290	Carlito_syrichta
ENSORLG00020021891	chd6	95	85.972	ENSCPOG00000015641	CHD6	79	70.691	Cavia_porcellus
ENSORLG00020021891	chd6	99	84.571	ENSCCAG00000036828	CHD6	96	84.571	Cebus_capucinus
ENSORLG00020021891	chd6	99	84.571	ENSCATG00000039248	CHD6	96	84.571	Cercocebus_atys
ENSORLG00020021891	chd6	95	85.772	ENSCLAG00000013743	CHD6	82	69.673	Chinchilla_lanigera
ENSORLG00020021891	chd6	95	85.972	ENSCSAG00000013997	CHD6	81	70.104	Chlorocebus_sabaeus
ENSORLG00020021891	chd6	95	81.162	ENSCHOG00000012647	CHD6	63	72.791	Choloepus_hoffmanni
ENSORLG00020021891	chd6	95	87.375	ENSCPBG00000019382	CHD6	77	72.184	Chrysemys_picta_bellii
ENSORLG00020021891	chd6	99	84.571	ENSCANG00000043435	CHD6	96	84.571	Colobus_angolensis_palliatus
ENSORLG00020021891	chd6	95	85.571	ENSCGRG00001002694	Chd6	77	73.770	Cricetulus_griseus_chok1gshd
ENSORLG00020021891	chd6	99	84.000	ENSCGRG00000006749	-	96	84.000	Cricetulus_griseus_crigri
ENSORLG00020021891	chd6	95	89.178	ENSDARG00000017244	chd6	92	67.302	Danio_rerio
ENSORLG00020021891	chd6	95	85.571	ENSDNOG00000004176	CHD6	76	72.768	Dasypus_novemcinctus
ENSORLG00020021891	chd6	99	84.130	ENSEASG00005023433	CHD6	96	84.130	Equus_asinus_asinus
ENSORLG00020021891	chd6	95	86.172	ENSECAG00000011761	CHD6	79	70.379	Equus_caballus
ENSORLG00020021891	chd6	95	88.200	ENSELUG00000012309	chd6	94	77.100	Esox_lucius
ENSORLG00020021891	chd6	95	86.172	ENSFCAG00000003572	CHD6	79	70.135	Felis_catus
ENSORLG00020021891	chd6	95	86.600	ENSFALG00000012563	CHD6	80	70.922	Ficedula_albicollis
ENSORLG00020021891	chd6	95	85.972	ENSFDAG00000013791	CHD6	79	70.877	Fukomys_damarensis
ENSORLG00020021891	chd6	90	90.000	ENSGMOG00000011715	chd6	86	81.850	Gadus_morhua
ENSORLG00020021891	chd6	90	92.111	ENSGACG00000000037	chd6	99	77.895	Gasterosteus_aculeatus
ENSORLG00020021891	chd6	64	83.582	ENSGAGG00000007475	-	79	84.012	Gopherus_agassizii
ENSORLG00020021891	chd6	99	84.571	ENSGGOG00000013123	CHD6	96	84.571	Gorilla_gorilla
ENSORLG00020021891	chd6	95	94.589	ENSHBUG00000014701	chd6	99	73.594	Haplochromis_burtoni
ENSORLG00020021891	chd6	95	85.772	ENSHGLG00000004548	CHD6	80	70.774	Heterocephalus_glaber_female
ENSORLG00020021891	chd6	95	85.772	ENSHGLG00100006401	CHD6	80	70.774	Heterocephalus_glaber_male
ENSORLG00020021891	chd6	95	88.577	ENSIPUG00000003692	chd6	91	69.214	Ictalurus_punctatus
ENSORLG00020021891	chd6	95	85.972	ENSSTOG00000013382	CHD6	76	70.992	Ictidomys_tridecemlineatus
ENSORLG00020021891	chd6	95	85.371	ENSLACG00000010881	CHD6	85	65.366	Latimeria_chalumnae
ENSORLG00020021891	chd6	95	88.800	ENSLOCG00000007386	chd6	86	72.924	Lepisosteus_oculatus
ENSORLG00020021891	chd6	95	85.772	ENSLAFG00000012144	CHD6	81	70.122	Loxodonta_africana
ENSORLG00020021891	chd6	99	84.571	ENSMFAG00000032830	CHD6	96	84.571	Macaca_fascicularis
ENSORLG00020021891	chd6	99	84.571	ENSMMUG00000020458	CHD6	96	84.571	Macaca_mulatta
ENSORLG00020021891	chd6	99	84.571	ENSMNEG00000040847	CHD6	96	84.571	Macaca_nemestrina
ENSORLG00020021891	chd6	99	84.571	ENSMLEG00000031965	CHD6	96	84.571	Mandrillus_leucophaeus
ENSORLG00020021891	chd6	95	94.389	ENSMAMG00000013111	chd6	99	71.657	Mastacembelus_armatus
ENSORLG00020021891	chd6	95	86.400	ENSMGAG00000001121	CHD6	83	70.279	Meleagris_gallopavo
ENSORLG00020021891	chd6	99	84.190	ENSMICG00000016641	CHD6	96	84.190	Microcebus_murinus
ENSORLG00020021891	chd6	95	85.400	ENSMOCG00000014004	-	77	81.471	Microtus_ochrogaster
ENSORLG00020021891	chd6	95	85.772	ENSMODG00000000720	-	79	76.087	Monodelphis_domestica
ENSORLG00020021891	chd6	95	85.571	MGP_CAROLIEiJ_G0024604	Chd6	85	82.806	Mus_caroli
ENSORLG00020021891	chd6	95	85.571	ENSMUSG00000057133	Chd6	85	82.905	Mus_musculus
ENSORLG00020021891	chd6	95	85.571	MGP_PahariEiJ_G0026048	Chd6	85	82.806	Mus_pahari
ENSORLG00020021891	chd6	95	85.571	MGP_SPRETEiJ_G0025526	Chd6	85	82.905	Mus_spretus
ENSORLG00020021891	chd6	95	86.172	ENSMPUG00000017695	CHD6	80	69.697	Mustela_putorius_furo
ENSORLG00020021891	chd6	95	85.571	ENSMLUG00000016247	CHD6	78	70.724	Myotis_lucifugus
ENSORLG00020021891	chd6	94	94.545	ENSNBRG00000013839	chd6	98	76.257	Neolamprologus_brichardi
ENSORLG00020021891	chd6	95	83.166	ENSNLEG00000006496	CHD6	80	69.456	Nomascus_leucogenys
ENSORLG00020021891	chd6	95	79.359	ENSOPRG00000013376	-	79	69.077	Ochotona_princeps
ENSORLG00020021891	chd6	95	94.389	ENSONIG00000000393	chd6	91	88.585	Oreochromis_niloticus
ENSORLG00020021891	chd6	95	84.369	ENSOANG00000014347	CHD6	69	70.724	Ornithorhynchus_anatinus
ENSORLG00020021891	chd6	95	85.972	ENSOCUG00000012394	CHD6	77	69.841	Oryctolagus_cuniculus
ENSORLG00020021891	chd6	95	86.172	ENSOGAG00000002427	CHD6	72	73.550	Otolemur_garnettii
ENSORLG00020021891	chd6	95	85.972	ENSOARG00000002597	CHD6	76	70.282	Ovis_aries
ENSORLG00020021891	chd6	95	86.172	ENSPPRG00000014756	CHD6	79	70.196	Panthera_pardus
ENSORLG00020021891	chd6	95	86.172	ENSPTIG00000011094	CHD6	79	70.012	Panthera_tigris_altaica
ENSORLG00020021891	chd6	99	84.571	ENSPTRG00000013504	CHD6	99	80.699	Pan_troglodytes
ENSORLG00020021891	chd6	99	84.571	ENSPANG00000025554	CHD6	96	84.571	Papio_anubis
ENSORLG00020021891	chd6	95	88.600	ENSPKIG00000005578	chd6	84	73.094	Paramormyrops_kingsleyae
ENSORLG00020021891	chd6	95	93.988	ENSPMGG00000014877	chd6	92	77.989	Periophthalmus_magnuspinnatus
ENSORLG00020021891	chd6	99	84.190	ENSPEMG00000014672	-	96	84.190	Peromyscus_maniculatus_bairdii
ENSORLG00020021891	chd6	95	85.772	ENSPCIG00000028037	CHD6	79	70.836	Phascolarctos_cinereus
ENSORLG00020021891	chd6	95	94.600	ENSPLAG00000003128	chd6	99	72.334	Poecilia_latipinna
ENSORLG00020021891	chd6	95	94.600	ENSPREG00000022653	chd6	99	93.956	Poecilia_reticulata
ENSORLG00020021891	chd6	95	85.972	ENSPPYG00000011016	CHD6	80	70.104	Pongo_abelii
ENSORLG00020021891	chd6	99	84.381	ENSPCOG00000001089	CHD6	96	84.381	Propithecus_coquereli
ENSORLG00020021891	chd6	95	94.589	ENSPNYG00000022516	chd6	97	78.927	Pundamilia_nyererei
ENSORLG00020021891	chd6	95	89.379	ENSPNAG00000012825	chd6	94	65.652	Pygocentrus_nattereri
ENSORLG00020021891	chd6	95	85.371	ENSRNOG00000016744	Chd6	77	72.774	Rattus_norvegicus
ENSORLG00020021891	chd6	99	84.571	ENSSBOG00000022089	CHD6	99	80.699	Saimiri_boliviensis_boliviensis
ENSORLG00020021891	chd6	95	85.772	ENSSHAG00000017072	CHD6	74	75.017	Sarcophilus_harrisii
ENSORLG00020021891	chd6	95	89.000	ENSSFOG00015012920	chd6	92	83.033	Scleropages_formosus
ENSORLG00020021891	chd6	88	85.403	ENSSARG00000002615	-	52	91.447	Sorex_araneus
ENSORLG00020021891	chd6	95	85.972	ENSSSCG00000007360	CHD6	78	70.318	Sus_scrofa
ENSORLG00020021891	chd6	95	86.774	ENSTGUG00000003179	CHD6	81	74.801	Taeniopygia_guttata
ENSORLG00020021891	chd6	95	92.800	ENSTNIG00000017487	chd6	98	81.958	Tetraodon_nigroviridis
ENSORLG00020021891	chd6	95	83.968	ENSTTRG00000013438	CHD6	75	75.878	Tursiops_truncatus
ENSORLG00020021891	chd6	99	83.748	ENSUAMG00000024036	CHD6	96	83.748	Ursus_americanus
ENSORLG00020021891	chd6	99	83.748	ENSUMAG00000002017	CHD6	96	83.748	Ursus_maritimus
ENSORLG00020021891	chd6	93	81.967	ENSVPAG00000007941	CHD6	71	78.495	Vicugna_pacos
ENSORLG00020021891	chd6	95	86.172	ENSVVUG00000029164	CHD6	79	70.043	Vulpes_vulpes
ENSORLG00020021891	chd6	95	62.525	ENSXETG00000021445	chd6	75	66.601	Xenopus_tropicalis