EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020022259 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Minus strand
Length: 12233 bases
Position: chr11:21459444-21471676
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020035428	PABP	PF00658.18	6.8e-31	1	1
ENSORLP00020035428	RRM_5	PF13893.6	2.9e-08	1	2
ENSORLP00020035428	RRM_5	PF13893.6	2.9e-08	2	2
ENSORLP00020035428	RRM_1	PF00076.22	2e-88	1	4
ENSORLP00020035428	RRM_1	PF00076.22	2e-88	2	4
ENSORLP00020035428	RRM_1	PF00076.22	2e-88	3	4
ENSORLP00020035428	RRM_1	PF00076.22	2e-88	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020030765	-	5331	-	ENSORLP00020035428	631 (aa)	-	-

Gene Model

Click here to download ENSORLG00020022259's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020022259's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020022259	-	59	34.066	ENSORLG00020012447	-	88	34.066
ENSORLG00020022259	-	98	83.333	ENSORLG00020018644	pabpc4	99	83.077
ENSORLG00020022259	-	60	36.145	ENSORLG00020014277	elavl4	81	36.145
ENSORLG00020022259	-	55	30.065	ENSORLG00020022335	RBMS1	56	30.263
ENSORLG00020022259	-	98	68.312	ENSORLG00020021193	pabpc1l	99	79.762
ENSORLG00020022259	-	68	38.554	ENSORLG00020003560	celf5a	53	36.559
ENSORLG00020022259	-	100	83.516	ENSORLG00020022398	pabpc1a	100	83.987
ENSORLG00020022259	-	59	37.349	ENSORLG00020016040	ELAVL2	85	37.349
ENSORLG00020022259	-	61	37.349	ENSORLG00020004570	elavl3	90	37.349
ENSORLG00020022259	-	52	34.091	ENSORLG00020006562	-	50	34.884

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020022259	-	58	77.041	ENSG00000186288	PABPC1L2A	98	77.041	Homo_sapiens
ENSORLG00020022259	-	58	77.041	ENSG00000184388	PABPC1L2B	98	77.041	Homo_sapiens
ENSORLG00020022259	-	100	84.772	ENSAPOG00000015105	pabpc1a	100	84.772	Acanthochromis_polyacanthus
ENSORLG00020022259	-	100	87.066	ENSAPOG00000017776	pabpc1b	100	87.066	Acanthochromis_polyacanthus
ENSORLG00020022259	-	59	77.041	ENSAMEG00000019441	-	98	77.041	Ailuropoda_melanoleuca
ENSORLG00020022259	-	100	84.301	ENSACIG00000004685	pabpc1a	100	84.458	Amphilophus_citrinellus
ENSORLG00020022259	-	100	82.677	ENSACIG00000018366	pabpc1b	100	82.677	Amphilophus_citrinellus
ENSORLG00020022259	-	100	84.144	ENSAOCG00000011656	pabpc1a	100	84.458	Amphiprion_ocellaris
ENSORLG00020022259	-	100	87.224	ENSAOCG00000019839	pabpc1b	100	87.224	Amphiprion_ocellaris
ENSORLG00020022259	-	100	87.224	ENSAPEG00000010435	pabpc1b	100	87.224	Amphiprion_percula
ENSORLG00020022259	-	100	84.144	ENSAPEG00000006963	pabpc1a	100	84.458	Amphiprion_percula
ENSORLG00020022259	-	100	86.478	ENSATEG00000012917	pabpc1b	100	86.478	Anabas_testudineus
ENSORLG00020022259	-	100	83.673	ENSATEG00000024852	pabpc1a	100	83.987	Anabas_testudineus
ENSORLG00020022259	-	58	77.041	ENSANAG00000019431	-	98	77.041	Aotus_nancymaae
ENSORLG00020022259	-	58	77.041	ENSANAG00000019429	-	98	77.041	Aotus_nancymaae
ENSORLG00020022259	-	100	87.382	ENSACLG00000014335	pabpc1b	100	87.382	Astatotilapia_calliptera
ENSORLG00020022259	-	99	89.423	ENSACLG00000009399	pabpc1a	99	90.196	Astatotilapia_calliptera
ENSORLG00020022259	-	100	85.984	ENSAMXG00000008599	pabpc1b	100	85.984	Astyanax_mexicanus
ENSORLG00020022259	-	60	74.163	ENSBTAG00000052491	-	98	74.163	Bos_taurus
ENSORLG00020022259	-	59	76.098	ENSBTAG00000050902	-	98	76.098	Bos_taurus
ENSORLG00020022259	-	58	77.041	ENSCJAG00000041326	-	98	77.041	Callithrix_jacchus
ENSORLG00020022259	-	60	76.098	ENSCAFG00020002052	-	98	76.098	Canis_lupus_dingo
ENSORLG00020022259	-	58	77.041	ENSCHIG00000006283	-	98	77.041	Capra_hircus
ENSORLG00020022259	-	58	77.041	ENSCHIG00000011138	-	98	77.041	Capra_hircus
ENSORLG00020022259	-	58	77.041	ENSTSYG00000001775	-	98	77.041	Carlito_syrichta
ENSORLG00020022259	-	58	77.041	ENSCPOG00000009525	-	98	77.041	Cavia_porcellus
ENSORLG00020022259	-	58	77.041	ENSCCAG00000031524	-	98	77.041	Cebus_capucinus
ENSORLG00020022259	-	58	77.041	ENSCATG00000042826	-	98	77.041	Cercocebus_atys
ENSORLG00020022259	-	58	77.041	ENSCATG00000043125	-	98	77.041	Cercocebus_atys
ENSORLG00020022259	-	58	75.000	ENSCLAG00000017409	-	98	75.000	Chinchilla_lanigera
ENSORLG00020022259	-	58	75.000	ENSCLAG00000017412	-	98	75.000	Chinchilla_lanigera
ENSORLG00020022259	-	58	77.041	ENSCSAG00000000102	-	98	77.041	Chlorocebus_sabaeus
ENSORLG00020022259	-	58	77.348	ENSCGRG00001023387	-	96	75.258	Cricetulus_griseus_chok1gshd
ENSORLG00020022259	-	100	84.858	ENSCSEG00000015241	-	100	84.858	Cynoglossus_semilaevis
ENSORLG00020022259	-	99	84.261	ENSCSEG00000013324	pabpc1a	99	84.579	Cynoglossus_semilaevis
ENSORLG00020022259	-	100	84.615	ENSCVAG00000021872	pabpc1a	100	84.615	Cyprinodon_variegatus
ENSORLG00020022259	-	100	85.354	ENSCVAG00000005489	pabpc1b	100	85.827	Cyprinodon_variegatus
ENSORLG00020022259	-	100	84.119	ENSDARG00000017219	pabpc1a	100	84.906	Danio_rerio
ENSORLG00020022259	-	100	86.457	ENSDARG00000021140	pabpc1b	99	92.199	Danio_rerio
ENSORLG00020022259	-	58	77.249	ENSDNOG00000030926	-	98	75.510	Dasypus_novemcinctus
ENSORLG00020022259	-	58	74.490	ENSDORG00000011362	-	98	74.490	Dipodomys_ordii
ENSORLG00020022259	-	60	75.728	ENSEASG00005010399	-	98	75.728	Equus_asinus_asinus
ENSORLG00020022259	-	60	75.728	ENSECAG00000002620	-	98	75.728	Equus_caballus
ENSORLG00020022259	-	59	73.469	ENSEEUG00000008203	-	98	73.469	Erinaceus_europaeus
ENSORLG00020022259	-	60	57.759	ENSELUG00000005389	-	97	57.759	Esox_lucius
ENSORLG00020022259	-	100	84.929	ENSELUG00000015062	-	100	84.929	Esox_lucius
ENSORLG00020022259	-	99	85.016	ENSELUG00000003614	pabpc1a	100	85.016	Esox_lucius
ENSORLG00020022259	-	58	77.041	ENSFCAG00000039701	-	98	77.041	Felis_catus
ENSORLG00020022259	-	58	77.041	ENSFDAG00000005484	-	98	77.041	Fukomys_damarensis
ENSORLG00020022259	-	100	84.458	ENSFHEG00000018979	pabpc1a	100	84.772	Fundulus_heteroclitus
ENSORLG00020022259	-	100	85.174	ENSFHEG00000008186	pabpc1b	100	86.120	Fundulus_heteroclitus
ENSORLG00020022259	-	100	78.972	ENSGMOG00000002448	-	100	78.972	Gadus_morhua
ENSORLG00020022259	-	99	82.353	ENSGMOG00000013448	pabpc1a	99	83.099	Gadus_morhua
ENSORLG00020022259	-	100	84.458	ENSGAFG00000019750	pabpc1a	100	84.615	Gambusia_affinis
ENSORLG00020022259	-	100	86.120	ENSGAFG00000010193	pabpc1b	100	86.909	Gambusia_affinis
ENSORLG00020022259	-	100	84.458	ENSGACG00000003572	pabpc1a	100	84.458	Gasterosteus_aculeatus
ENSORLG00020022259	-	100	83.568	ENSGACG00000003771	pabpc1b	100	83.568	Gasterosteus_aculeatus
ENSORLG00020022259	-	58	77.041	ENSGGOG00000038606	-	98	77.041	Gorilla_gorilla
ENSORLG00020022259	-	58	77.041	ENSGGOG00000043933	-	98	77.041	Gorilla_gorilla
ENSORLG00020022259	-	100	87.382	ENSHBUG00000002075	pabpc1b	100	87.382	Haplochromis_burtoni
ENSORLG00020022259	-	99	89.423	ENSHBUG00000020487	pabpc1a	99	90.196	Haplochromis_burtoni
ENSORLG00020022259	-	58	76.020	ENSHGLG00000019668	-	98	76.020	Heterocephalus_glaber_female
ENSORLG00020022259	-	58	76.020	ENSHGLG00000019762	-	98	76.020	Heterocephalus_glaber_female
ENSORLG00020022259	-	58	76.020	ENSHGLG00100020854	-	98	76.020	Heterocephalus_glaber_male
ENSORLG00020022259	-	100	83.830	ENSHCOG00000013502	pabpc1a	100	84.144	Hippocampus_comes
ENSORLG00020022259	-	98	66.507	ENSHCOG00000003175	pabpc1b	99	66.507	Hippocampus_comes
ENSORLG00020022259	-	100	80.727	ENSIPUG00000010791	-	100	80.727	Ictalurus_punctatus
ENSORLG00020022259	-	100	83.412	ENSIPUG00000008848	pabpc1a	100	83.728	Ictalurus_punctatus
ENSORLG00020022259	-	74	59.701	ENSIPUG00000018724	-	76	59.701	Ictalurus_punctatus
ENSORLG00020022259	-	71	55.902	ENSIPUG00000021244	-	60	55.902	Ictalurus_punctatus
ENSORLG00020022259	-	62	76.531	ENSSTOG00000026028	-	98	76.531	Ictidomys_tridecemlineatus
ENSORLG00020022259	-	62	76.531	ENSSTOG00000022096	-	98	76.531	Ictidomys_tridecemlineatus
ENSORLG00020022259	-	58	75.510	ENSJJAG00000007037	-	98	75.510	Jaculus_jaculus
ENSORLG00020022259	-	100	85.443	ENSKMAG00000008049	pabpc1b	100	85.759	Kryptolebias_marmoratus
ENSORLG00020022259	-	100	84.772	ENSKMAG00000000605	pabpc1a	100	84.772	Kryptolebias_marmoratus
ENSORLG00020022259	-	100	85.804	ENSLBEG00000026845	pabpc1b	100	85.804	Labrus_bergylta
ENSORLG00020022259	-	100	83.987	ENSLBEG00000024002	-	100	83.987	Labrus_bergylta
ENSORLG00020022259	-	59	76.923	ENSLAFG00000023096	-	98	76.923	Loxodonta_africana
ENSORLG00020022259	-	58	76.650	ENSMFAG00000028878	-	98	76.650	Macaca_fascicularis
ENSORLG00020022259	-	58	77.041	ENSMMUG00000039929	-	98	77.041	Macaca_mulatta
ENSORLG00020022259	-	58	77.041	ENSMMUG00000037681	-	98	77.041	Macaca_mulatta
ENSORLG00020022259	-	58	77.041	ENSMMUG00000009740	-	98	77.041	Macaca_mulatta
ENSORLG00020022259	-	58	77.041	ENSMNEG00000037732	-	98	77.041	Macaca_nemestrina
ENSORLG00020022259	-	58	77.041	ENSMLEG00000027495	-	98	77.041	Mandrillus_leucophaeus
ENSORLG00020022259	-	99	88.702	ENSMAMG00000004502	-	99	88.702	Mastacembelus_armatus
ENSORLG00020022259	-	100	87.382	ENSMAMG00000014610	pabpc1b	100	87.539	Mastacembelus_armatus
ENSORLG00020022259	-	99	89.423	ENSMZEG00005025416	pabpc1a	99	90.196	Maylandia_zebra
ENSORLG00020022259	-	100	87.382	ENSMZEG00005026745	pabpc1b	100	87.382	Maylandia_zebra
ENSORLG00020022259	-	58	77.041	ENSMICG00000047642	-	98	77.041	Microcebus_murinus
ENSORLG00020022259	-	99	88.221	ENSMMOG00000018044	pabpc1a	99	90.196	Mola_mola
ENSORLG00020022259	-	100	81.013	ENSMMOG00000018009	pabpc1b	100	81.013	Mola_mola
ENSORLG00020022259	-	99	64.511	ENSMODG00000015024	-	99	64.511	Monodelphis_domestica
ENSORLG00020022259	-	99	71.203	ENSMODG00000013156	-	98	72.160	Monodelphis_domestica
ENSORLG00020022259	-	100	83.673	ENSMALG00000013020	-	100	83.830	Monopterus_albus
ENSORLG00020022259	-	100	83.043	ENSMALG00000006066	pabpc1b	100	83.043	Monopterus_albus
ENSORLG00020022259	-	58	78.689	ENSNGAG00000012688	-	98	75.510	Nannospalax_galili
ENSORLG00020022259	-	100	87.382	ENSNBRG00000013737	pabpc1b	100	87.382	Neolamprologus_brichardi
ENSORLG00020022259	-	99	89.423	ENSNBRG00000003068	-	99	90.196	Neolamprologus_brichardi
ENSORLG00020022259	-	58	77.041	ENSNLEG00000018128	-	98	77.041	Nomascus_leucogenys
ENSORLG00020022259	-	58	76.531	ENSODEG00000018540	-	98	76.531	Octodon_degus
ENSORLG00020022259	-	100	87.539	ENSONIG00000002717	pabpc1b	100	87.539	Oreochromis_niloticus
ENSORLG00020022259	-	100	84.615	ENSONIG00000006871	-	100	84.772	Oreochromis_niloticus
ENSORLG00020022259	-	58	77.041	ENSOCUG00000002565	-	98	77.041	Oryctolagus_cuniculus
ENSORLG00020022259	-	99	88.361	ENSORLG00000002691	pabpc1a	96	89.189	Oryzias_latipes
ENSORLG00020022259	-	100	99.366	ENSORLG00000003008	-	100	99.366	Oryzias_latipes
ENSORLG00020022259	-	100	83.359	ENSORLG00015013633	pabpc1	100	83.830	Oryzias_latipes_hsok
ENSORLG00020022259	-	100	99.208	ENSORLG00015010932	-	100	99.208	Oryzias_latipes_hsok
ENSORLG00020022259	-	100	83.830	ENSOMEG00000020219	pabpc1a	100	84.301	Oryzias_melastigma
ENSORLG00020022259	-	99	88.010	ENSOMEG00000013627	pabpc1b	100	88.010	Oryzias_melastigma
ENSORLG00020022259	-	58	77.041	ENSOGAG00000029513	-	98	77.041	Otolemur_garnettii
ENSORLG00020022259	-	58	77.041	ENSOGAG00000026047	-	98	77.041	Otolemur_garnettii
ENSORLG00020022259	-	58	77.041	ENSOARG00000005943	-	98	77.041	Ovis_aries
ENSORLG00020022259	-	58	77.041	ENSPPAG00000012920	-	98	77.041	Pan_paniscus
ENSORLG00020022259	-	58	77.041	ENSPPRG00000011804	-	98	77.041	Panthera_pardus
ENSORLG00020022259	-	58	77.041	ENSPPRG00000011809	-	98	77.041	Panthera_pardus
ENSORLG00020022259	-	58	77.041	ENSPTRG00000028252	-	98	77.041	Pan_troglodytes
ENSORLG00020022259	-	58	77.041	ENSPANG00000011549	-	98	77.041	Papio_anubis
ENSORLG00020022259	-	100	86.929	ENSPKIG00000005676	pabpc1b	100	86.929	Paramormyrops_kingsleyae
ENSORLG00020022259	-	71	88.591	ENSPMGG00000023134	-	97	88.591	Periophthalmus_magnuspinnatus
ENSORLG00020022259	-	71	87.892	ENSPMGG00000022487	pabpc1a	92	87.892	Periophthalmus_magnuspinnatus
ENSORLG00020022259	-	99	68.800	ENSPCIG00000016995	-	55	68.800	Phascolarctos_cinereus
ENSORLG00020022259	-	100	83.051	ENSPFOG00000010815	pabpc1a	100	83.359	Poecilia_formosa
ENSORLG00020022259	-	100	85.647	ENSPFOG00000005917	pabpc1b	100	86.435	Poecilia_formosa
ENSORLG00020022259	-	100	84.458	ENSPLAG00000004114	pabpc1a	100	84.772	Poecilia_latipinna
ENSORLG00020022259	-	100	85.962	ENSPLAG00000001388	pabpc1b	100	86.751	Poecilia_latipinna
ENSORLG00020022259	-	100	85.647	ENSPMEG00000014399	pabpc1b	100	86.435	Poecilia_mexicana
ENSORLG00020022259	-	100	84.458	ENSPMEG00000001334	pabpc1a	100	84.772	Poecilia_mexicana
ENSORLG00020022259	-	99	88.942	ENSPREG00000019595	pabpc1a	99	90.196	Poecilia_reticulata
ENSORLG00020022259	-	100	85.962	ENSPREG00000010911	pabpc1b	100	86.751	Poecilia_reticulata
ENSORLG00020022259	-	58	77.041	ENSPPYG00000020468	-	98	77.041	Pongo_abelii
ENSORLG00020022259	-	59	77.041	ENSPCAG00000005308	-	98	77.041	Procavia_capensis
ENSORLG00020022259	-	58	76.531	ENSPCOG00000026349	-	98	76.531	Propithecus_coquereli
ENSORLG00020022259	-	64	77.436	ENSPVAG00000016117	-	98	77.436	Pteropus_vampyrus
ENSORLG00020022259	-	100	87.382	ENSPNYG00000012578	pabpc1b	100	87.382	Pundamilia_nyererei
ENSORLG00020022259	-	100	84.615	ENSPNYG00000005192	pabpc1a	100	84.772	Pundamilia_nyererei
ENSORLG00020022259	-	100	85.063	ENSPNAG00000028408	pabpc1a	100	85.063	Pygocentrus_nattereri
ENSORLG00020022259	-	100	85.512	ENSPNAG00000024626	pabpc1b	100	85.512	Pygocentrus_nattereri
ENSORLG00020022259	-	92	84.382	ENSRBIG00000028738	-	95	84.382	Rhinopithecus_bieti
ENSORLG00020022259	-	58	77.041	ENSRBIG00000027173	-	98	77.041	Rhinopithecus_bieti
ENSORLG00020022259	-	58	77.041	ENSRROG00000017404	-	98	77.041	Rhinopithecus_roxellana
ENSORLG00020022259	-	97	62.480	ENSSHAG00000000511	-	99	62.480	Sarcophilus_harrisii
ENSORLG00020022259	-	100	84.882	ENSSFOG00015006662	pabpc1a	100	85.512	Scleropages_formosus
ENSORLG00020022259	-	61	76.879	ENSSFOG00015019668	-	66	76.879	Scleropages_formosus
ENSORLG00020022259	-	100	86.435	ENSSFOG00015002752	-	100	86.435	Scleropages_formosus
ENSORLG00020022259	-	100	84.144	ENSSMAG00000010803	pabpc1a	100	84.144	Scophthalmus_maximus
ENSORLG00020022259	-	100	85.647	ENSSMAG00000006869	pabpc1b	100	85.804	Scophthalmus_maximus
ENSORLG00020022259	-	100	84.458	ENSSDUG00000006675	pabpc1a	100	84.458	Seriola_dumerili
ENSORLG00020022259	-	100	85.331	ENSSDUG00000011965	pabpc1b	100	85.331	Seriola_dumerili
ENSORLG00020022259	-	100	87.011	ENSSLDG00000014156	pabpc1b	100	87.011	Seriola_lalandi_dorsalis
ENSORLG00020022259	-	100	84.458	ENSSLDG00000011661	pabpc1a	100	84.458	Seriola_lalandi_dorsalis
ENSORLG00020022259	-	100	87.539	ENSSPAG00000019265	pabpc1b	100	87.697	Stegastes_partitus
ENSORLG00020022259	-	100	84.144	ENSSPAG00000014453	-	100	84.458	Stegastes_partitus
ENSORLG00020022259	-	58	77.041	ENSSSCG00000032167	-	98	77.041	Sus_scrofa
ENSORLG00020022259	-	58	77.041	ENSSSCG00000036336	-	98	77.041	Sus_scrofa
ENSORLG00020022259	-	100	83.229	ENSTRUG00000011577	-	100	83.699	Takifugu_rubripes
ENSORLG00020022259	-	100	84.094	ENSTRUG00000003767	-	100	84.301	Takifugu_rubripes
ENSORLG00020022259	-	100	83.699	ENSTNIG00000009153	pabpc1b	100	83.699	Tetraodon_nigroviridis
ENSORLG00020022259	-	100	80.371	ENSTNIG00000013307	pabpc1a	100	80.835	Tetraodon_nigroviridis
ENSORLG00020022259	-	59	77.041	ENSTTRG00000013181	-	98	77.041	Tursiops_truncatus
ENSORLG00020022259	-	58	77.041	ENSUAMG00000008089	-	98	77.041	Ursus_americanus
ENSORLG00020022259	-	58	77.041	ENSUMAG00000003364	-	98	77.041	Ursus_maritimus
ENSORLG00020022259	-	97	52.769	ENSUMAG00000023926	-	89	66.851	Ursus_maritimus
ENSORLG00020022259	-	59	76.000	ENSVVUG00000015892	-	97	76.000	Vulpes_vulpes
ENSORLG00020022259	-	99	43.498	ENSXETG00000015439	-	100	43.049	Xenopus_tropicalis
ENSORLG00020022259	-	100	83.043	ENSXCOG00000019901	pabpc1b	100	83.043	Xiphophorus_couchianus
ENSORLG00020022259	-	100	81.013	ENSXCOG00000017066	pabpc1a	100	81.646	Xiphophorus_couchianus
ENSORLG00020022259	-	100	83.987	ENSXMAG00000002555	pabpc1a	100	84.301	Xiphophorus_maculatus
ENSORLG00020022259	-	100	85.962	ENSXMAG00000003753	pabpc1b	100	86.751	Xiphophorus_maculatus