EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSORLG00020022398 (Gene tree)
Gene ID
-
Gene Symbol
pabpc1a
Alias
-
Full Name
poly(A) binding protein%2C cytoplasmic 1a
Gene Type
protein_coding
Species
Oryzias_latipes_hni
Status
putative
Strand
Plus strand
Length
7495 bases
Position
chr16:5634966-5642460
Accession
ZDB-GENE-030131-3238
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSORLP00020000267PABPPF00658.187.1e-3211
ENSORLP00020000267RRM_5PF13893.66.1e-0811
ENSORLP00020000267RRM_1PF00076.227.7e-9314
ENSORLP00020000267RRM_1PF00076.227.7e-9324
ENSORLP00020000267RRM_1PF00076.227.7e-9334
ENSORLP00020000267RRM_1PF00076.227.7e-9344
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSORLT00020014979-5413-ENSORLP00020000267635 (aa)--
Gene Model
Click here to download ENSORLG00020022398's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020022398's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSORLG00020022398pabpc1a5833.333ENSORLG00020013187rbm195933.333
ENSORLG00020022398pabpc1a10083.987ENSORLG00020022259-10083.516
ENSORLG00020022398pabpc1a9874.194ENSORLG00020021193pabpc1l9974.194
ENSORLG00020022398pabpc1a9884.259ENSORLG00020018644pabpc49784.259
ENSORLG00020022398pabpc1a5936.145ENSORLG00020014277elavl48136.145
ENSORLG00020022398pabpc1a5837.349ENSORLG00020016040ELAVL28537.349
ENSORLG00020022398pabpc1a5937.349ENSORLG00020004570elavl39037.349
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSORLG00020022398pabpc1a5880.102ENSG00000184388PABPC1L2B9880.102Homo_sapiens
ENSORLG00020022398pabpc1a5880.102ENSG00000186288PABPC1L2A9880.102Homo_sapiens
ENSORLG00020022398pabpc1a10097.323ENSAPOG00000015105pabpc1a10097.323Acanthochromis_polyacanthus
ENSORLG00020022398pabpc1a10089.498ENSAPOG00000017776pabpc1b10089.342Acanthochromis_polyacanthus
ENSORLG00020022398pabpc1a5880.102ENSAMEG00000019441-9880.102Ailuropoda_melanoleuca
ENSORLG00020022398pabpc1a10085.023ENSACIG00000018366pabpc1b10084.555Amphilophus_citrinellus
ENSORLG00020022398pabpc1a10096.850ENSACIG00000004685pabpc1a10096.850Amphilophus_citrinellus
ENSORLG00020022398pabpc1a10097.638ENSAOCG00000011656pabpc1a10097.638Amphiprion_ocellaris
ENSORLG00020022398pabpc1a10089.028ENSAOCG00000019839pabpc1b10089.028Amphiprion_ocellaris
ENSORLG00020022398pabpc1a10097.638ENSAPEG00000006963pabpc1a10097.638Amphiprion_percula
ENSORLG00020022398pabpc1a10089.028ENSAPEG00000010435pabpc1b10089.028Amphiprion_percula
ENSORLG00020022398pabpc1a10088.732ENSATEG00000012917pabpc1b10088.732Anabas_testudineus
ENSORLG00020022398pabpc1a10097.165ENSATEG00000024852pabpc1a10097.165Anabas_testudineus
ENSORLG00020022398pabpc1a5880.102ENSANAG00000019431-9880.102Aotus_nancymaae
ENSORLG00020022398pabpc1a5880.102ENSANAG00000019429-9880.102Aotus_nancymaae
ENSORLG00020022398pabpc1a10096.378ENSACLG00000009399pabpc1a10099.010Astatotilapia_calliptera
ENSORLG00020022398pabpc1a10088.245ENSACLG00000014335pabpc1b10088.088Astatotilapia_calliptera
ENSORLG00020022398pabpc1a10089.655ENSAMXG00000008599pabpc1b10089.498Astyanax_mexicanus
ENSORLG00020022398pabpc1a5979.024ENSBTAG00000050902-9879.024Bos_taurus
ENSORLG00020022398pabpc1a5977.033ENSBTAG00000052491-9877.033Bos_taurus
ENSORLG00020022398pabpc1a5880.102ENSCJAG00000041326-9880.102Callithrix_jacchus
ENSORLG00020022398pabpc1a5979.024ENSCAFG00020002052-9879.024Canis_lupus_dingo
ENSORLG00020022398pabpc1a5880.102ENSCHIG00000011138-9880.102Capra_hircus
ENSORLG00020022398pabpc1a5880.102ENSCHIG00000006283-9880.102Capra_hircus
ENSORLG00020022398pabpc1a5880.102ENSTSYG00000001775-9880.102Carlito_syrichta
ENSORLG00020022398pabpc1a5880.102ENSCPOG00000009525-9880.102Cavia_porcellus
ENSORLG00020022398pabpc1a5880.102ENSCCAG00000031524-9880.102Cebus_capucinus
ENSORLG00020022398pabpc1a5880.102ENSCATG00000042826-9880.102Cercocebus_atys
ENSORLG00020022398pabpc1a5880.102ENSCATG00000043125-9880.102Cercocebus_atys
ENSORLG00020022398pabpc1a5878.061ENSCLAG00000017412-9878.061Chinchilla_lanigera
ENSORLG00020022398pabpc1a5878.061ENSCLAG00000017409-9878.061Chinchilla_lanigera
ENSORLG00020022398pabpc1a5880.102ENSCSAG00000000102-9880.102Chlorocebus_sabaeus
ENSORLG00020022398pabpc1a5780.110ENSCGRG00001023387-9677.436Cricetulus_griseus_chok1gshd
ENSORLG00020022398pabpc1a10087.931ENSCSEG00000015241-10087.931Cynoglossus_semilaevis
ENSORLG00020022398pabpc1a9996.361ENSCSEG00000013324pabpc1a10096.361Cynoglossus_semilaevis
ENSORLG00020022398pabpc1a10087.480ENSCVAG00000005489pabpc1b10087.324Cyprinodon_variegatus
ENSORLG00020022398pabpc1a10096.693ENSCVAG00000021872pabpc1a10096.693Cyprinodon_variegatus
ENSORLG00020022398pabpc1a10091.536ENSDARG00000017219pabpc1a10091.536Danio_rerio
ENSORLG00020022398pabpc1a10088.401ENSDARG00000021140pabpc1b9992.199Danio_rerio
ENSORLG00020022398pabpc1a5880.423ENSDNOG00000030926-9878.571Dasypus_novemcinctus
ENSORLG00020022398pabpc1a5877.551ENSDORG00000011362-9877.551Dipodomys_ordii
ENSORLG00020022398pabpc1a5978.641ENSEASG00005010399-9878.641Equus_asinus_asinus
ENSORLG00020022398pabpc1a5978.641ENSECAG00000002620-9878.641Equus_caballus
ENSORLG00020022398pabpc1a5976.020ENSEEUG00000008203-9876.020Erinaceus_europaeus
ENSORLG00020022398pabpc1a9993.711ENSELUG00000003614pabpc1a10093.711Esox_lucius
ENSORLG00020022398pabpc1a10087.656ENSELUG00000015062-10087.500Esox_lucius
ENSORLG00020022398pabpc1a5958.621ENSELUG00000005389-9758.621Esox_lucius
ENSORLG00020022398pabpc1a5880.102ENSFCAG00000039701-9880.102Felis_catus
ENSORLG00020022398pabpc1a5880.102ENSFDAG00000005484-9880.102Fukomys_damarensis
ENSORLG00020022398pabpc1a10088.871ENSFHEG00000008186pabpc1b10089.028Fundulus_heteroclitus
ENSORLG00020022398pabpc1a10096.850ENSFHEG00000018979pabpc1a10096.850Fundulus_heteroclitus
ENSORLG00020022398pabpc1a10080.310ENSGMOG00000002448-10079.141Gadus_morhua
ENSORLG00020022398pabpc1a9993.972ENSGMOG00000013448pabpc1a9993.818Gadus_morhua
ENSORLG00020022398pabpc1a10096.535ENSGAFG00000019750pabpc1a10096.535Gambusia_affinis
ENSORLG00020022398pabpc1a10089.498ENSGAFG00000010193pabpc1b10089.655Gambusia_affinis
ENSORLG00020022398pabpc1a10087.907ENSGACG00000003771pabpc1b10087.907Gasterosteus_aculeatus
ENSORLG00020022398pabpc1a10096.378ENSGACG00000003572pabpc1a10096.378Gasterosteus_aculeatus
ENSORLG00020022398pabpc1a5880.102ENSGGOG00000043933-9880.102Gorilla_gorilla
ENSORLG00020022398pabpc1a5880.102ENSGGOG00000038606-9880.102Gorilla_gorilla
ENSORLG00020022398pabpc1a10096.378ENSHBUG00000020487pabpc1a10099.010Haplochromis_burtoni
ENSORLG00020022398pabpc1a10088.245ENSHBUG00000002075pabpc1b10088.088Haplochromis_burtoni
ENSORLG00020022398pabpc1a5879.082ENSHGLG00000019668-9879.082Heterocephalus_glaber_female
ENSORLG00020022398pabpc1a5879.082ENSHGLG00000019762-9879.082Heterocephalus_glaber_female
ENSORLG00020022398pabpc1a5879.082ENSHGLG00100020854-9879.082Heterocephalus_glaber_male
ENSORLG00020022398pabpc1a10096.693ENSHCOG00000013502pabpc1a10096.693Hippocampus_comes
ENSORLG00020022398pabpc1a9876.835ENSHCOG00000003175pabpc1b9981.053Hippocampus_comes
ENSORLG00020022398pabpc1a10083.987ENSIPUG00000010791-10083.830Ictalurus_punctatus
ENSORLG00020022398pabpc1a8155.224ENSIPUG00000018724-8555.224Ictalurus_punctatus
ENSORLG00020022398pabpc1a10090.394ENSIPUG00000008848pabpc1a10090.394Ictalurus_punctatus
ENSORLG00020022398pabpc1a7554.678ENSIPUG00000021244-6554.678Ictalurus_punctatus
ENSORLG00020022398pabpc1a5879.592ENSSTOG00000026028-9879.592Ictidomys_tridecemlineatus
ENSORLG00020022398pabpc1a5879.592ENSSTOG00000022096-9879.592Ictidomys_tridecemlineatus
ENSORLG00020022398pabpc1a5878.571ENSJJAG00000007037-9878.571Jaculus_jaculus
ENSORLG00020022398pabpc1a10097.480ENSKMAG00000000605pabpc1a10097.480Kryptolebias_marmoratus
ENSORLG00020022398pabpc1a10087.893ENSKMAG00000008049pabpc1b10088.050Kryptolebias_marmoratus
ENSORLG00020022398pabpc1a10096.378ENSLBEG00000024002-10096.378Labrus_bergylta
ENSORLG00020022398pabpc1a10088.558ENSLBEG00000026845pabpc1b10088.226Labrus_bergylta
ENSORLG00020022398pabpc1a5878.974ENSLAFG00000023096-9878.974Loxodonta_africana
ENSORLG00020022398pabpc1a5879.695ENSMFAG00000028878-9879.695Macaca_fascicularis
ENSORLG00020022398pabpc1a5880.102ENSMMUG00000009740-9880.102Macaca_mulatta
ENSORLG00020022398pabpc1a5880.102ENSMMUG00000037681-9880.102Macaca_mulatta
ENSORLG00020022398pabpc1a5880.102ENSMMUG00000039929-9880.102Macaca_mulatta
ENSORLG00020022398pabpc1a5880.102ENSMNEG00000037732-9880.102Macaca_nemestrina
ENSORLG00020022398pabpc1a5880.102ENSMLEG00000027495-9880.102Mandrillus_leucophaeus
ENSORLG00020022398pabpc1a10097.008ENSMAMG00000004502-10097.008Mastacembelus_armatus
ENSORLG00020022398pabpc1a10088.871ENSMAMG00000014610pabpc1b10088.871Mastacembelus_armatus
ENSORLG00020022398pabpc1a10096.378ENSMZEG00005025416pabpc1a10099.010Maylandia_zebra
ENSORLG00020022398pabpc1a10088.245ENSMZEG00005026745pabpc1b10088.088Maylandia_zebra
ENSORLG00020022398pabpc1a5880.102ENSMICG00000047642-9880.102Microcebus_murinus
ENSORLG00020022398pabpc1a10095.000ENSMMOG00000018044pabpc1a10095.000Mola_mola
ENSORLG00020022398pabpc1a10083.673ENSMMOG00000018009pabpc1b10083.673Mola_mola
ENSORLG00020022398pabpc1a9872.524ENSMODG00000013156-9872.684Monodelphis_domestica
ENSORLG00020022398pabpc1a9965.884ENSMODG00000015024-9965.517Monodelphis_domestica
ENSORLG00020022398pabpc1a10097.008ENSMALG00000013020-10097.008Monopterus_albus
ENSORLG00020022398pabpc1a10084.615ENSMALG00000006066pabpc1b10084.615Monopterus_albus
ENSORLG00020022398pabpc1a5881.967ENSNGAG00000012688-9878.571Nannospalax_galili
ENSORLG00020022398pabpc1a10088.245ENSNBRG00000013737pabpc1b10088.088Neolamprologus_brichardi
ENSORLG00020022398pabpc1a10096.378ENSNBRG00000003068-10099.010Neolamprologus_brichardi
ENSORLG00020022398pabpc1a5880.102ENSNLEG00000018128-9880.102Nomascus_leucogenys
ENSORLG00020022398pabpc1a5879.592ENSODEG00000018540-9879.592Octodon_degus
ENSORLG00020022398pabpc1a10095.748ENSONIG00000006871-10095.748Oreochromis_niloticus
ENSORLG00020022398pabpc1a10088.245ENSONIG00000002717pabpc1b10088.088Oreochromis_niloticus
ENSORLG00020022398pabpc1a5880.102ENSOCUG00000002565-9880.102Oryctolagus_cuniculus
ENSORLG00020022398pabpc1a10083.987ENSORLG00000003008-10083.516Oryzias_latipes
ENSORLG00020022398pabpc1a10099.843ENSORLG00000002691pabpc1a100100.000Oryzias_latipes
ENSORLG00020022398pabpc1a10084.301ENSORLG00015010932-10083.830Oryzias_latipes_hsok
ENSORLG00020022398pabpc1a10099.843ENSORLG00015013633pabpc110099.843Oryzias_latipes_hsok
ENSORLG00020022398pabpc1a8886.139ENSOMEG00000013627pabpc1b10086.139Oryzias_melastigma
ENSORLG00020022398pabpc1a10099.213ENSOMEG00000020219pabpc1a10099.213Oryzias_melastigma
ENSORLG00020022398pabpc1a5880.102ENSOGAG00000026047-9880.102Otolemur_garnettii
ENSORLG00020022398pabpc1a5880.102ENSOGAG00000029513-9880.102Otolemur_garnettii
ENSORLG00020022398pabpc1a5880.102ENSOARG00000005943-9880.102Ovis_aries
ENSORLG00020022398pabpc1a5880.102ENSPPAG00000012920-9880.102Pan_paniscus
ENSORLG00020022398pabpc1a5880.102ENSPPRG00000011809-9880.102Panthera_pardus
ENSORLG00020022398pabpc1a5880.102ENSPPRG00000011804-9880.102Panthera_pardus
ENSORLG00020022398pabpc1a5880.102ENSPTRG00000028252-9880.102Pan_troglodytes
ENSORLG00020022398pabpc1a5880.102ENSPANG00000011549-9880.102Papio_anubis
ENSORLG00020022398pabpc1a10089.185ENSPKIG00000005676pabpc1b10089.028Paramormyrops_kingsleyae
ENSORLG00020022398pabpc1a7092.377ENSPMGG00000023134-9792.377Periophthalmus_magnuspinnatus
ENSORLG00020022398pabpc1a7592.500ENSPMGG00000022487pabpc1a9892.887Periophthalmus_magnuspinnatus
ENSORLG00020022398pabpc1a9971.746ENSPCIG00000016995-5571.611Phascolarctos_cinereus
ENSORLG00020022398pabpc1a10095.209ENSPFOG00000010815pabpc1a10095.209Poecilia_formosa
ENSORLG00020022398pabpc1a10089.498ENSPFOG00000005917pabpc1b10089.655Poecilia_formosa
ENSORLG00020022398pabpc1a10097.165ENSPLAG00000004114pabpc1a10097.165Poecilia_latipinna
ENSORLG00020022398pabpc1a10089.655ENSPLAG00000001388pabpc1b10089.812Poecilia_latipinna
ENSORLG00020022398pabpc1a10089.498ENSPMEG00000014399pabpc1b10089.655Poecilia_mexicana
ENSORLG00020022398pabpc1a10097.165ENSPMEG00000001334pabpc1a10097.165Poecilia_mexicana
ENSORLG00020022398pabpc1a9995.183ENSPREG00000019595pabpc1a100100.000Poecilia_reticulata
ENSORLG00020022398pabpc1a10089.655ENSPREG00000010911pabpc1b10089.812Poecilia_reticulata
ENSORLG00020022398pabpc1a5880.102ENSPPYG00000020468-9880.102Pongo_abelii
ENSORLG00020022398pabpc1a5980.102ENSPCAG00000005308-9880.102Procavia_capensis
ENSORLG00020022398pabpc1a5879.592ENSPCOG00000026349-9879.592Propithecus_coquereli
ENSORLG00020022398pabpc1a5980.513ENSPVAG00000016117-9880.513Pteropus_vampyrus
ENSORLG00020022398pabpc1a10088.245ENSPNYG00000012578pabpc1b10088.088Pundamilia_nyererei
ENSORLG00020022398pabpc1a10096.378ENSPNYG00000005192pabpc1a10096.378Pundamilia_nyererei
ENSORLG00020022398pabpc1a10089.655ENSPNAG00000024626pabpc1b10089.498Pygocentrus_nattereri
ENSORLG00020022398pabpc1a10090.895ENSPNAG00000028408pabpc1a10090.581Pygocentrus_nattereri
ENSORLG00020022398pabpc1a8689.810ENSRBIG00000028738-9489.810Rhinopithecus_bieti
ENSORLG00020022398pabpc1a5880.102ENSRBIG00000027173-9880.102Rhinopithecus_bieti
ENSORLG00020022398pabpc1a5880.102ENSRROG00000017404-9880.102Rhinopithecus_roxellana
ENSORLG00020022398pabpc1a9864.263ENSSHAG00000000511-10063.782Sarcophilus_harrisii
ENSORLG00020022398pabpc1a6978.613ENSSFOG00015019668-8878.613Scleropages_formosus
ENSORLG00020022398pabpc1a10089.796ENSSFOG00015006662pabpc1a10089.796Scleropages_formosus
ENSORLG00020022398pabpc1a10089.168ENSSFOG00015002752-10089.011Scleropages_formosus
ENSORLG00020022398pabpc1a10088.245ENSSMAG00000006869pabpc1b10088.088Scophthalmus_maximus
ENSORLG00020022398pabpc1a10096.693ENSSMAG00000010803pabpc1a10096.693Scophthalmus_maximus
ENSORLG00020022398pabpc1a10087.304ENSSDUG00000011965pabpc1b10086.970Seriola_dumerili
ENSORLG00020022398pabpc1a10097.008ENSSDUG00000006675pabpc1a10097.008Seriola_dumerili
ENSORLG00020022398pabpc1a10097.008ENSSLDG00000011661pabpc1a10097.008Seriola_lalandi_dorsalis
ENSORLG00020022398pabpc1a10088.958ENSSLDG00000014156pabpc1b10088.629Seriola_lalandi_dorsalis
ENSORLG00020022398pabpc1a10097.638ENSSPAG00000014453-10097.638Stegastes_partitus
ENSORLG00020022398pabpc1a10089.498ENSSPAG00000019265pabpc1b10089.168Stegastes_partitus
ENSORLG00020022398pabpc1a5880.102ENSSSCG00000032167-9880.102Sus_scrofa
ENSORLG00020022398pabpc1a5880.102ENSSSCG00000036336-9880.102Sus_scrofa
ENSORLG00020022398pabpc1a10085.915ENSTRUG00000003767-10085.915Takifugu_rubripes
ENSORLG00020022398pabpc1a10094.497ENSTRUG00000011577-10094.811Takifugu_rubripes
ENSORLG00020022398pabpc1a10086.449ENSTNIG00000009153pabpc1b10085.826Tetraodon_nigroviridis
ENSORLG00020022398pabpc1a10091.473ENSTNIG00000013307pabpc1a10091.783Tetraodon_nigroviridis
ENSORLG00020022398pabpc1a5880.102ENSTTRG00000013181-9880.102Tursiops_truncatus
ENSORLG00020022398pabpc1a5880.102ENSUAMG00000008089-9880.102Ursus_americanus
ENSORLG00020022398pabpc1a9753.945ENSUMAG00000023926-8969.890Ursus_maritimus
ENSORLG00020022398pabpc1a5880.102ENSUMAG00000003364-9880.102Ursus_maritimus
ENSORLG00020022398pabpc1a5879.000ENSVVUG00000015892-9779.000Vulpes_vulpes
ENSORLG00020022398pabpc1a9745.221ENSXETG00000015439-9745.161Xenopus_tropicalis
ENSORLG00020022398pabpc1a10085.400ENSXCOG00000019901pabpc1b10085.400Xiphophorus_couchianus
ENSORLG00020022398pabpc1a10091.339ENSXCOG00000017066pabpc1a10091.339Xiphophorus_couchianus
ENSORLG00020022398pabpc1a10097.008ENSXMAG00000002555pabpc1a10097.008Xiphophorus_maculatus
ENSORLG00020022398pabpc1a10089.655ENSXMAG00000003753pabpc1b10089.812Xiphophorus_maculatus

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