EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020022507 (Gene tree)
Gene ID: -
Gene Symbol: rbm42
Alias: -
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 7765 bases
Position: chr16:7002475-7010239
Accession: ZDB-GENE-040809-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020000176	RRM_1	PF00076.22	6.6e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020015152	-	1161	-	ENSORLP00020000176	386 (aa)	-	-

Gene Model

Click here to download ENSORLG00020022507's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020022507's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020022507	rbm42	100	61.060	ENSAPOG00000015109	rbm42	100	64.133	Acanthochromis_polyacanthus
ENSORLG00020022507	rbm42	56	75.410	ENSACIG00000010771	rbm42	61	75.410	Amphilophus_citrinellus
ENSORLG00020022507	rbm42	100	60.369	ENSAOCG00000008873	rbm42	100	63.658	Amphiprion_ocellaris
ENSORLG00020022507	rbm42	100	60.369	ENSAPEG00000012051	rbm42	99	63.658	Amphiprion_percula
ENSORLG00020022507	rbm42	100	60.648	ENSATEG00000000536	rbm42	100	63.876	Anabas_testudineus
ENSORLG00020022507	rbm42	100	63.702	ENSACLG00000004988	rbm42	100	63.942	Astatotilapia_calliptera
ENSORLG00020022507	rbm42	51	73.636	ENSAMXG00000016545	rbm42	100	58.933	Astyanax_mexicanus
ENSORLG00020022507	rbm42	51	51.269	WBGene00021901	tag-262	60	49.490	Caenorhabditis_elegans
ENSORLG00020022507	rbm42	97	57.176	ENSCSEG00000010248	rbm42	100	60.000	Cynoglossus_semilaevis
ENSORLG00020022507	rbm42	51	75.446	ENSCVAG00000015589	rbm42	100	60.757	Cyprinodon_variegatus
ENSORLG00020022507	rbm42	54	71.983	ENSDARG00000039910	rbm42	100	59.906	Danio_rerio
ENSORLG00020022507	rbm42	54	46.119	FBgn0037342	CG2931	68	44.762	Drosophila_melanogaster
ENSORLG00020022507	rbm42	100	57.078	ENSELUG00000022403	rbm42	100	57.241	Esox_lucius
ENSORLG00020022507	rbm42	52	77.778	ENSFHEG00000006764	rbm42	82	73.200	Fundulus_heteroclitus
ENSORLG00020022507	rbm42	71	64.401	ENSGAFG00000009059	rbm42	99	63.399	Gambusia_affinis
ENSORLG00020022507	rbm42	100	59.122	ENSGACG00000004170	rbm42	100	61.337	Gasterosteus_aculeatus
ENSORLG00020022507	rbm42	100	63.462	ENSHBUG00000011141	rbm42	100	63.702	Haplochromis_burtoni
ENSORLG00020022507	rbm42	100	62.590	ENSHCOG00000021214	rbm42	100	60.192	Hippocampus_comes
ENSORLG00020022507	rbm42	100	59.535	ENSIPUG00000022365	rbm42	99	59.485	Ictalurus_punctatus
ENSORLG00020022507	rbm42	90	59.424	ENSKMAG00000015287	rbm42	99	58.505	Kryptolebias_marmoratus
ENSORLG00020022507	rbm42	100	62.791	ENSLBEG00000017547	rbm42	100	62.708	Labrus_bergylta
ENSORLG00020022507	rbm42	72	65.000	ENSLBEG00000004578	-	86	65.147	Labrus_bergylta
ENSORLG00020022507	rbm42	100	53.864	ENSLOCG00000003368	rbm42	100	54.157	Lepisosteus_oculatus
ENSORLG00020022507	rbm42	100	61.283	ENSMAMG00000006708	rbm42	100	62.945	Mastacembelus_armatus
ENSORLG00020022507	rbm42	100	63.702	ENSMZEG00005025234	rbm42	100	63.942	Maylandia_zebra
ENSORLG00020022507	rbm42	90	56.675	ENSMALG00000015720	rbm42	100	61.518	Monopterus_albus
ENSORLG00020022507	rbm42	100	62.500	ENSONIG00000008029	rbm42	100	63.121	Oreochromis_niloticus
ENSORLG00020022507	rbm42	100	73.349	ENSORLG00015000659	rbm42	100	73.113	Oryzias_latipes_hsok
ENSORLG00020022507	rbm42	56	83.817	ENSOMEG00000014332	rbm42	91	83.817	Oryzias_melastigma
ENSORLG00020022507	rbm42	100	59.016	ENSPKIG00000015165	rbm42	100	56.582	Paramormyrops_kingsleyae
ENSORLG00020022507	rbm42	100	56.995	ENSPMGG00000003569	rbm42	100	95.714	Periophthalmus_magnuspinnatus
ENSORLG00020022507	rbm42	100	61.667	ENSPFOG00000007701	rbm42	100	61.429	Poecilia_formosa
ENSORLG00020022507	rbm42	100	61.667	ENSPLAG00000009405	rbm42	100	61.429	Poecilia_latipinna
ENSORLG00020022507	rbm42	100	61.667	ENSPMEG00000010375	rbm42	100	61.429	Poecilia_mexicana
ENSORLG00020022507	rbm42	100	61.905	ENSPREG00000018102	rbm42	100	61.667	Poecilia_reticulata
ENSORLG00020022507	rbm42	100	63.702	ENSPNYG00000014460	rbm42	100	63.942	Pundamilia_nyererei
ENSORLG00020022507	rbm42	100	62.438	ENSPNAG00000009961	rbm42	100	62.438	Pygocentrus_nattereri
ENSORLG00020022507	rbm42	100	56.944	ENSSFOG00015019227	rbm42	100	57.241	Scleropages_formosus
ENSORLG00020022507	rbm42	100	59.174	ENSSMAG00000011935	rbm42	100	61.045	Scophthalmus_maximus
ENSORLG00020022507	rbm42	100	61.521	ENSSDUG00000004033	rbm42	100	64.762	Seriola_dumerili
ENSORLG00020022507	rbm42	100	60.599	ENSSPAG00000019871	rbm42	100	63.658	Stegastes_partitus
ENSORLG00020022507	rbm42	100	60.291	ENSTRUG00000024586	-	76	59.662	Takifugu_rubripes
ENSORLG00020022507	rbm42	99	52.784	ENSTNIG00000011669	rbm42	100	53.653	Tetraodon_nigroviridis
ENSORLG00020022507	rbm42	100	51.708	ENSXETG00000017599	rbm42	100	53.991	Xenopus_tropicalis
ENSORLG00020022507	rbm42	100	62.381	ENSXMAG00000012827	rbm42	100	62.857	Xiphophorus_maculatus