EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020022574 (Gene tree)
Gene ID: -
Gene Symbol: ssb
Alias: -
Full Name: Sjogren syndrome antigen B (autoantigen La)
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 9583 bases
Position: chr21:20316630-20326212
Accession: ZDB-GENE-030131-223
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020000109	RRM_1	PF00076.22	2.1e-11	1	1
ENSORLP00020021171	RRM_1	PF00076.22	2.2e-11	1	1
ENSORLP00020021171	RRM_3	PF08777.11	1.5e-28	1	1
ENSORLP00020000109	RRM_3	PF08777.11	6.1e-28	1	1
ENSORLP00020000109	La	PF05383.17	1.5e-19	1	1
ENSORLP00020021171	La	PF05383.17	1.6e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020015262	-	1302	-	ENSORLP00020021171	433 (aa)	-	-
ENSORLT00020015261	-	4392	-	ENSORLP00020000109	401 (aa)	-	-

Gene Model

Click here to download ENSORLG00020022574's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020022574's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020022574	ssb	100	57.702	ENSG00000138385	SSB	98	69.492	Homo_sapiens
ENSORLG00020022574	ssb	100	81.796	ENSAPOG00000003448	ssb	100	81.546	Acanthochromis_polyacanthus
ENSORLG00020022574	ssb	100	55.370	ENSAMEG00000010507	SSB	99	55.370	Ailuropoda_melanoleuca
ENSORLG00020022574	ssb	93	79.625	ENSACIG00000001738	ssb	95	79.019	Amphilophus_citrinellus
ENSORLG00020022574	ssb	100	81.546	ENSAOCG00000020398	ssb	100	81.297	Amphiprion_ocellaris
ENSORLG00020022574	ssb	100	82.045	ENSAPEG00000020395	ssb	100	81.796	Amphiprion_percula
ENSORLG00020022574	ssb	100	82.294	ENSATEG00000016884	ssb	100	82.045	Anabas_testudineus
ENSORLG00020022574	ssb	100	53.901	ENSAPLG00000006109	SSB	99	54.028	Anas_platyrhynchos
ENSORLG00020022574	ssb	100	55.231	ENSACAG00000017008	SSB	99	55.231	Anolis_carolinensis
ENSORLG00020022574	ssb	100	51.724	ENSANAG00000027195	-	99	52.463	Aotus_nancymaae
ENSORLG00020022574	ssb	100	76.119	ENSACLG00000010798	ssb	100	75.373	Astatotilapia_calliptera
ENSORLG00020022574	ssb	100	60.976	ENSAMXG00000012606	ssb	100	61.707	Astyanax_mexicanus
ENSORLG00020022574	ssb	100	58.025	ENSBTAG00000008716	SSB	99	57.778	Bos_taurus
ENSORLG00020022574	ssb	75	34.641	WBGene00016653	C44E4.4	76	34.967	Caenorhabditis_elegans
ENSORLG00020022574	ssb	100	58.374	ENSCJAG00000045073	SSB	99	58.128	Callithrix_jacchus
ENSORLG00020022574	ssb	100	57.494	ENSCAFG00000012418	SSB	99	57.248	Canis_familiaris
ENSORLG00020022574	ssb	100	57.494	ENSCAFG00020002900	SSB	99	57.248	Canis_lupus_dingo
ENSORLG00020022574	ssb	100	54.187	ENSCHIG00000022196	-	83	59.878	Capra_hircus
ENSORLG00020022574	ssb	100	57.882	ENSCHIG00000022624	-	99	57.635	Capra_hircus
ENSORLG00020022574	ssb	99	57.778	ENSTSYG00000000097	SSB	99	57.531	Carlito_syrichta
ENSORLG00020022574	ssb	100	58.621	ENSCPOG00000003338	SSB	99	58.374	Cavia_porcellus
ENSORLG00020022574	ssb	100	58.867	ENSCCAG00000035147	SSB	99	58.621	Cebus_capucinus
ENSORLG00020022574	ssb	99	43.890	ENSCATG00000042909	-	98	43.641	Cercocebus_atys
ENSORLG00020022574	ssb	72	54.983	ENSCATG00000036701	SSB	83	54.639	Cercocebus_atys
ENSORLG00020022574	ssb	100	57.882	ENSCLAG00000015617	-	99	57.635	Chinchilla_lanigera
ENSORLG00020022574	ssb	100	58.621	ENSCSAG00000015200	SSB	88	58.374	Chlorocebus_sabaeus
ENSORLG00020022574	ssb	97	53.964	ENSCSAG00000018390	-	99	52.897	Chlorocebus_sabaeus
ENSORLG00020022574	ssb	100	57.635	ENSCHOG00000007763	SSB	99	57.389	Choloepus_hoffmanni
ENSORLG00020022574	ssb	100	59.268	ENSCPBG00000006519	SSB	99	59.024	Chrysemys_picta_bellii
ENSORLG00020022574	ssb	96	46.234	ENSCANG00000028838	-	91	45.974	Colobus_angolensis_palliatus
ENSORLG00020022574	ssb	100	51.111	ENSCANG00000033240	-	99	50.617	Colobus_angolensis_palliatus
ENSORLG00020022574	ssb	100	58.621	ENSCANG00000027695	SSB	99	58.374	Colobus_angolensis_palliatus
ENSORLG00020022574	ssb	100	53.563	ENSCGRG00001024831	Ssb	99	53.563	Cricetulus_griseus_chok1gshd
ENSORLG00020022574	ssb	100	53.563	ENSCGRG00000005387	Ssb	99	53.563	Cricetulus_griseus_crigri
ENSORLG00020022574	ssb	99	79.950	ENSCSEG00000011599	ssb	99	79.950	Cynoglossus_semilaevis
ENSORLG00020022574	ssb	100	82.090	ENSCVAG00000021558	ssb	100	78.358	Cyprinodon_variegatus
ENSORLG00020022574	ssb	100	62.562	ENSDARG00000029252	ssb	100	62.562	Danio_rerio
ENSORLG00020022574	ssb	100	58.374	ENSDNOG00000013450	SSB	99	58.128	Dasypus_novemcinctus
ENSORLG00020022574	ssb	100	53.012	ENSDORG00000005543	Ssb	99	53.431	Dipodomys_ordii
ENSORLG00020022574	ssb	84	33.613	FBgn0011638	La	77	35.948	Drosophila_melanogaster
ENSORLG00020022574	ssb	50	61.881	ENSETEG00000004614	-	52	61.881	Echinops_telfairi
ENSORLG00020022574	ssb	99	44.110	ENSEBUG00000001237	ssb	82	47.664	Eptatretus_burgeri
ENSORLG00020022574	ssb	100	58.621	ENSEASG00005022835	SSB	99	58.374	Equus_asinus_asinus
ENSORLG00020022574	ssb	100	58.621	ENSECAG00000018495	SSB	99	58.374	Equus_caballus
ENSORLG00020022574	ssb	76	49.675	ENSEEUG00000008077	SSB	78	52.577	Erinaceus_europaeus
ENSORLG00020022574	ssb	100	68.148	ENSELUG00000020929	ssb	100	66.420	Esox_lucius
ENSORLG00020022574	ssb	100	58.722	ENSFCAG00000011601	SSB	99	58.477	Felis_catus
ENSORLG00020022574	ssb	99	56.265	ENSFALG00000000930	SSB	99	57.002	Ficedula_albicollis
ENSORLG00020022574	ssb	100	58.374	ENSFDAG00000000598	SSB	99	58.128	Fukomys_damarensis
ENSORLG00020022574	ssb	74	73.841	ENSFHEG00000003268	ssb	93	74.834	Fundulus_heteroclitus
ENSORLG00020022574	ssb	99	70.223	ENSGMOG00000002664	ssb	100	69.825	Gadus_morhua
ENSORLG00020022574	ssb	99	56.724	ENSGALG00000009677	SSB	99	55.882	Gallus_gallus
ENSORLG00020022574	ssb	100	81.141	ENSGAFG00000002749	ssb	100	80.893	Gambusia_affinis
ENSORLG00020022574	ssb	100	76.413	ENSGACG00000005107	ssb	100	76.413	Gasterosteus_aculeatus
ENSORLG00020022574	ssb	100	58.780	ENSGAGG00000007807	SSB	99	58.537	Gopherus_agassizii
ENSORLG00020022574	ssb	100	50.000	ENSGGOG00000024891	-	99	49.261	Gorilla_gorilla
ENSORLG00020022574	ssb	54	52.941	ENSGGOG00000023471	-	89	51.584	Gorilla_gorilla
ENSORLG00020022574	ssb	100	76.119	ENSHBUG00000006584	ssb	100	75.373	Haplochromis_burtoni
ENSORLG00020022574	ssb	100	52.088	ENSHGLG00000004478	-	99	51.597	Heterocephalus_glaber_female
ENSORLG00020022574	ssb	100	52.970	ENSHGLG00000005832	-	99	52.723	Heterocephalus_glaber_female
ENSORLG00020022574	ssb	100	57.524	ENSHGLG00000017580	-	99	57.178	Heterocephalus_glaber_female
ENSORLG00020022574	ssb	100	57.524	ENSHGLG00100003084	-	99	57.178	Heterocephalus_glaber_male
ENSORLG00020022574	ssb	100	51.980	ENSHGLG00100008767	-	99	51.733	Heterocephalus_glaber_male
ENSORLG00020022574	ssb	99	73.990	ENSHCOG00000019011	ssb	99	74.747	Hippocampus_comes
ENSORLG00020022574	ssb	100	63.260	ENSIPUG00000003681	SSB	100	62.287	Ictalurus_punctatus
ENSORLG00020022574	ssb	100	58.374	ENSSTOG00000008416	SSB	99	57.389	Ictidomys_tridecemlineatus
ENSORLG00020022574	ssb	100	51.544	ENSJJAG00000023158	-	99	51.069	Jaculus_jaculus
ENSORLG00020022574	ssb	89	47.911	ENSJJAG00000016250	-	94	47.075	Jaculus_jaculus
ENSORLG00020022574	ssb	100	80.050	ENSKMAG00000017317	ssb	100	79.551	Kryptolebias_marmoratus
ENSORLG00020022574	ssb	100	79.800	ENSLBEG00000017345	ssb	100	79.800	Labrus_bergylta
ENSORLG00020022574	ssb	100	53.790	ENSLACG00000014056	SSB	99	53.790	Latimeria_chalumnae
ENSORLG00020022574	ssb	100	62.899	ENSLOCG00000007933	ssb	99	63.145	Lepisosteus_oculatus
ENSORLG00020022574	ssb	74	45.455	ENSLAFG00000026721	-	97	45.455	Loxodonta_africana
ENSORLG00020022574	ssb	100	53.682	ENSLAFG00000000867	-	99	54.157	Loxodonta_africana
ENSORLG00020022574	ssb	100	50.123	ENSLAFG00000028909	-	99	49.383	Loxodonta_africana
ENSORLG00020022574	ssb	89	51.247	ENSMFAG00000041478	-	91	56.410	Macaca_fascicularis
ENSORLG00020022574	ssb	100	58.621	ENSMFAG00000039066	SSB	99	58.374	Macaca_fascicularis
ENSORLG00020022574	ssb	100	58.621	ENSMMUG00000023051	SSB	99	58.374	Macaca_mulatta
ENSORLG00020022574	ssb	99	42.394	ENSMMUG00000039889	-	98	42.145	Macaca_mulatta
ENSORLG00020022574	ssb	100	50.860	ENSMMUG00000011724	-	91	50.538	Macaca_mulatta
ENSORLG00020022574	ssb	89	51.247	ENSMNEG00000034698	-	91	56.410	Macaca_nemestrina
ENSORLG00020022574	ssb	100	49.512	ENSMNEG00000028321	SSB	85	67.826	Macaca_nemestrina
ENSORLG00020022574	ssb	100	41.133	ENSMLEG00000042644	-	99	40.247	Mandrillus_leucophaeus
ENSORLG00020022574	ssb	100	58.621	ENSMLEG00000035717	SSB	99	58.374	Mandrillus_leucophaeus
ENSORLG00020022574	ssb	100	81.546	ENSMAMG00000004800	ssb	100	81.297	Mastacembelus_armatus
ENSORLG00020022574	ssb	100	76.119	ENSMZEG00005005749	ssb	100	75.373	Maylandia_zebra
ENSORLG00020022574	ssb	99	56.724	ENSMGAG00000010328	SSB	100	61.353	Meleagris_gallopavo
ENSORLG00020022574	ssb	100	58.374	ENSMICG00000028252	-	99	58.128	Microcebus_murinus
ENSORLG00020022574	ssb	98	53.535	ENSMICG00000033304	-	83	59.295	Microcebus_murinus
ENSORLG00020022574	ssb	100	46.552	ENSMODG00000007027	-	99	46.305	Monodelphis_domestica
ENSORLG00020022574	ssb	100	48.148	ENSMODG00000019271	-	99	47.901	Monodelphis_domestica
ENSORLG00020022574	ssb	100	55.340	ENSMODG00000008227	-	99	54.854	Monodelphis_domestica
ENSORLG00020022574	ssb	91	76.839	ENSMALG00000008045	ssb	93	77.540	Monopterus_albus
ENSORLG00020022574	ssb	100	53.110	MGP_CAROLIEiJ_G0023629	-	98	64.103	Mus_caroli
ENSORLG00020022574	ssb	100	53.222	ENSMUSG00000068882	Ssb	98	64.103	Mus_musculus
ENSORLG00020022574	ssb	100	53.222	MGP_PahariEiJ_G0025081	-	98	63.462	Mus_pahari
ENSORLG00020022574	ssb	100	53.222	MGP_SPRETEiJ_G0024551	Ssb	98	64.103	Mus_spretus
ENSORLG00020022574	ssb	100	58.128	ENSMPUG00000000785	SSB	99	57.882	Mustela_putorius_furo
ENSORLG00020022574	ssb	100	57.212	ENSMLUG00000016316	SSB	99	56.971	Myotis_lucifugus
ENSORLG00020022574	ssb	100	75.622	ENSNBRG00000012661	ssb	100	74.876	Neolamprologus_brichardi
ENSORLG00020022574	ssb	85	47.230	ENSNLEG00000028754	-	78	50.000	Nomascus_leucogenys
ENSORLG00020022574	ssb	100	58.374	ENSNLEG00000004958	SSB	99	58.128	Nomascus_leucogenys
ENSORLG00020022574	ssb	62	62.000	ENSMEUG00000001650	-	100	62.000	Notamacropus_eugenii
ENSORLG00020022574	ssb	51	58.599	ENSOPRG00000008475	-	54	58.599	Ochotona_princeps
ENSORLG00020022574	ssb	94	56.649	ENSODEG00000004202	-	99	56.117	Octodon_degus
ENSORLG00020022574	ssb	100	77.612	ENSONIG00000008776	ssb	100	76.617	Oreochromis_niloticus
ENSORLG00020022574	ssb	100	56.158	ENSOANG00000008543	SSB	99	56.158	Ornithorhynchus_anatinus
ENSORLG00020022574	ssb	100	58.128	ENSOCUG00000010396	SSB	99	57.882	Oryctolagus_cuniculus
ENSORLG00020022574	ssb	100	99.252	ENSORLG00000017208	ssb	100	99.252	Oryzias_latipes
ENSORLG00020022574	ssb	100	99.002	ENSORLG00015016592	ssb	100	99.002	Oryzias_latipes_hsok
ENSORLG00020022574	ssb	100	86.284	ENSOMEG00000003193	ssb	100	87.282	Oryzias_melastigma
ENSORLG00020022574	ssb	100	54.157	ENSOGAG00000029768	SSB	99	53.919	Otolemur_garnettii
ENSORLG00020022574	ssb	100	57.882	ENSOARG00000002906	SSB	99	57.635	Ovis_aries
ENSORLG00020022574	ssb	100	50.000	ENSPPAG00000032427	-	100	60.465	Pan_paniscus
ENSORLG00020022574	ssb	100	57.702	ENSPPAG00000042673	SSB	99	57.213	Pan_paniscus
ENSORLG00020022574	ssb	87	50.857	ENSPPAG00000006189	-	89	50.000	Pan_paniscus
ENSORLG00020022574	ssb	100	58.722	ENSPPRG00000006599	SSB	99	58.477	Panthera_pardus
ENSORLG00020022574	ssb	100	58.722	ENSPTIG00000011021	SSB	97	58.477	Panthera_tigris_altaica
ENSORLG00020022574	ssb	100	57.702	ENSPTRG00000012620	SSB	99	57.213	Pan_troglodytes
ENSORLG00020022574	ssb	100	48.276	ENSPTRG00000042880	-	99	47.537	Pan_troglodytes
ENSORLG00020022574	ssb	96	41.388	ENSPANG00000031877	-	75	45.215	Papio_anubis
ENSORLG00020022574	ssb	99	42.145	ENSPANG00000034126	-	98	42.145	Papio_anubis
ENSORLG00020022574	ssb	100	58.621	ENSPANG00000007440	SSB	99	58.374	Papio_anubis
ENSORLG00020022574	ssb	100	66.832	ENSPKIG00000019325	ssb	99	66.584	Paramormyrops_kingsleyae
ENSORLG00020022574	ssb	100	59.268	ENSPSIG00000002265	SSB	93	59.268	Pelodiscus_sinensis
ENSORLG00020022574	ssb	81	69.444	ENSPMGG00000020075	ssb	91	64.912	Periophthalmus_magnuspinnatus
ENSORLG00020022574	ssb	81	45.566	ENSPMAG00000002982	ssb	75	45.706	Petromyzon_marinus
ENSORLG00020022574	ssb	99	56.140	ENSPCIG00000028591	-	99	56.650	Phascolarctos_cinereus
ENSORLG00020022574	ssb	100	81.546	ENSPFOG00000009650	ssb	100	81.546	Poecilia_formosa
ENSORLG00020022574	ssb	100	81.297	ENSPLAG00000020498	ssb	100	81.297	Poecilia_latipinna
ENSORLG00020022574	ssb	100	81.297	ENSPMEG00000001051	ssb	100	81.297	Poecilia_mexicana
ENSORLG00020022574	ssb	93	81.818	ENSPREG00000003708	ssb	96	82.834	Poecilia_reticulata
ENSORLG00020022574	ssb	100	58.374	ENSPPYG00000012919	SSB	99	58.128	Pongo_abelii
ENSORLG00020022574	ssb	95	55.729	ENSPCAG00000010276	SSB	99	55.729	Procavia_capensis
ENSORLG00020022574	ssb	100	56.404	ENSPCOG00000015741	-	92	65.517	Propithecus_coquereli
ENSORLG00020022574	ssb	100	51.970	ENSPCOG00000023189	-	99	51.724	Propithecus_coquereli
ENSORLG00020022574	ssb	89	59.384	ENSPVAG00000006615	SSB	87	63.192	Pteropus_vampyrus
ENSORLG00020022574	ssb	100	76.119	ENSPNYG00000006444	ssb	100	75.373	Pundamilia_nyererei
ENSORLG00020022574	ssb	100	62.195	ENSPNAG00000011708	ssb	100	61.463	Pygocentrus_nattereri
ENSORLG00020022574	ssb	100	52.871	ENSRNOG00000007998	Ssb	99	50.835	Rattus_norvegicus
ENSORLG00020022574	ssb	100	53.202	ENSRNOG00000011606	AABR07061825.1	99	52.217	Rattus_norvegicus
ENSORLG00020022574	ssb	87	55.143	ENSRBIG00000041608	-	94	52.857	Rhinopithecus_bieti
ENSORLG00020022574	ssb	99	41.791	ENSRBIG00000029918	-	98	41.542	Rhinopithecus_bieti
ENSORLG00020022574	ssb	94	49.868	ENSRBIG00000041232	-	98	49.340	Rhinopithecus_bieti
ENSORLG00020022574	ssb	100	50.488	ENSRBIG00000041972	SSB	88	67.826	Rhinopithecus_bieti
ENSORLG00020022574	ssb	99	47.512	ENSRROG00000007149	-	98	47.264	Rhinopithecus_roxellana
ENSORLG00020022574	ssb	87	57.143	ENSRROG00000034102	-	96	52.393	Rhinopithecus_roxellana
ENSORLG00020022574	ssb	98	50.000	ENSRROG00000031684	-	99	49.495	Rhinopithecus_roxellana
ENSORLG00020022574	ssb	100	58.621	ENSRROG00000040346	SSB	99	58.374	Rhinopithecus_roxellana
ENSORLG00020022574	ssb	100	58.621	ENSSBOG00000027204	SSB	99	58.374	Saimiri_boliviensis_boliviensis
ENSORLG00020022574	ssb	100	56.650	ENSSHAG00000018062	SSB	99	56.650	Sarcophilus_harrisii
ENSORLG00020022574	ssb	100	65.025	ENSSFOG00015000550	ssb	99	65.764	Scleropages_formosus
ENSORLG00020022574	ssb	100	76.559	ENSSMAG00000013885	ssb	98	79.620	Scophthalmus_maximus
ENSORLG00020022574	ssb	100	83.292	ENSSDUG00000020117	ssb	100	82.793	Seriola_dumerili
ENSORLG00020022574	ssb	100	79.551	ENSSLDG00000002525	ssb	100	78.803	Seriola_lalandi_dorsalis
ENSORLG00020022574	ssb	95	52.865	ENSSARG00000007747	SSB	99	52.344	Sorex_araneus
ENSORLG00020022574	ssb	100	58.088	ENSSPUG00000012112	SSB	99	58.088	Sphenodon_punctatus
ENSORLG00020022574	ssb	100	80.050	ENSSPAG00000005696	ssb	100	79.800	Stegastes_partitus
ENSORLG00020022574	ssb	95	53.149	ENSSSCG00000015938	SSB	81	57.143	Sus_scrofa
ENSORLG00020022574	ssb	95	57.069	ENSTGUG00000007942	SSB	99	56.724	Taeniopygia_guttata
ENSORLG00020022574	ssb	100	75.561	ENSTRUG00000017839	ssb	100	77.057	Takifugu_rubripes
ENSORLG00020022574	ssb	92	76.022	ENSTNIG00000000915	ssb	91	81.481	Tetraodon_nigroviridis
ENSORLG00020022574	ssb	82	67.826	ENSTBEG00000009056	SSB	81	67.826	Tupaia_belangeri
ENSORLG00020022574	ssb	100	58.477	ENSTTRG00000002152	SSB	99	58.231	Tursiops_truncatus
ENSORLG00020022574	ssb	94	58.575	ENSUAMG00000027833	SSB	96	59.189	Ursus_americanus
ENSORLG00020022574	ssb	100	57.248	ENSUMAG00000013907	SSB	99	57.002	Ursus_maritimus
ENSORLG00020022574	ssb	100	58.416	ENSVPAG00000007183	SSB	99	58.168	Vicugna_pacos
ENSORLG00020022574	ssb	100	57.494	ENSVVUG00000016573	SSB	77	57.248	Vulpes_vulpes
ENSORLG00020022574	ssb	99	52.570	ENSXETG00000025402	ssb	99	51.636	Xenopus_tropicalis
ENSORLG00020022574	ssb	93	77.005	ENSXCOG00000019109	ssb	93	82.540	Xiphophorus_couchianus
ENSORLG00020022574	ssb	100	79.653	ENSXMAG00000004888	ssb	100	79.156	Xiphophorus_maculatus