EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPANG00000001992 (Gene tree)
Gene ID: 101008121
Gene Symbol: PSPC1
Alias: -
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Papio_anubis
Status: putative
Strand: Plus strand
Length: 80932 bases
Position: chr17:1244826-1325757
Accession: 101008121
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPANP00000039988	RRM_1	PF00076.22	1.4e-32	1	2
ENSPANP00000039988	RRM_1	PF00076.22	1.4e-32	2	2
ENSPANP00000003404	RRM_1	PF00076.22	3e-32	1	2
ENSPANP00000003404	RRM_1	PF00076.22	3e-32	2	2
ENSPANP00000009885	RRM_1	PF00076.22	4.2e-32	1	2
ENSPANP00000009885	RRM_1	PF00076.22	4.2e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPANT00000002003	PSPC1-202	1410	-	ENSPANP00000003404	469 (aa)	-	A0A096MUA3
ENSPANT00000056222	PSPC1-203	1095	XM_021929481	ENSPANP00000039988	364 (aa)	XP_021785173	A0A2I3MW37
ENSPANT00000011547	PSPC1-201	1572	XM_009191611	ENSPANP00000009885	523 (aa)	XP_009189875	A0A096NAX9

Gene Model

Click here to download ENSPANG00000001992's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPANG00000001992's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPANG00000001992	PSPC1	88	39.535	ENSPANG00000035017	-	75	45.161
ENSPANG00000001992	PSPC1	79	74.394	ENSPANG00000013979	NONO	87	72.549
ENSPANG00000001992	PSPC1	87	74.528	ENSPANG00000005380	SFPQ	54	68.579

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPANG00000001992	PSPC1	100	99.426	ENSG00000121390	PSPC1	100	99.426	Homo_sapiens
ENSPANG00000001992	PSPC1	89	81.231	ENSAPOG00000015946	pspc1	79	73.488	Acanthochromis_polyacanthus
ENSPANG00000001992	PSPC1	100	98.662	ENSAMEG00000017420	PSPC1	100	98.662	Ailuropoda_melanoleuca
ENSPANG00000001992	PSPC1	89	71.914	ENSACIG00000018695	pspc1	87	59.448	Amphilophus_citrinellus
ENSPANG00000001992	PSPC1	89	80.615	ENSAOCG00000005279	pspc1	78	73.023	Amphiprion_ocellaris
ENSPANG00000001992	PSPC1	89	80.615	ENSAPEG00000015927	pspc1	79	73.023	Amphiprion_percula
ENSPANG00000001992	PSPC1	89	67.593	ENSATEG00000004878	pspc1	76	61.687	Anabas_testudineus
ENSPANG00000001992	PSPC1	87	75.786	ENSAPLG00000003643	SFPQ	69	69.126	Anas_platyrhynchos
ENSPANG00000001992	PSPC1	77	93.812	ENSAPLG00000006246	PSPC1	100	93.812	Anas_platyrhynchos
ENSPANG00000001992	PSPC1	90	96.636	ENSACAG00000002093	PSPC1	88	91.631	Anolis_carolinensis
ENSPANG00000001992	PSPC1	79	70.732	ENSACAG00000013307	-	56	64.917	Anolis_carolinensis
ENSPANG00000001992	PSPC1	100	98.662	ENSANAG00000000059	PSPC1	100	98.662	Aotus_nancymaae
ENSPANG00000001992	PSPC1	92	70.149	ENSACLG00000027220	pspc1	87	58.672	Astatotilapia_calliptera
ENSPANG00000001992	PSPC1	89	79.394	ENSAMXG00000036881	pspc1	80	72.874	Astyanax_mexicanus
ENSPANG00000001992	PSPC1	100	95.985	ENSBTAG00000003934	PSPC1	100	95.985	Bos_taurus
ENSPANG00000001992	PSPC1	100	98.662	ENSCJAG00000004554	PSPC1	100	98.662	Callithrix_jacchus
ENSPANG00000001992	PSPC1	100	98.662	ENSCAFG00020002009	PSPC1	100	98.662	Canis_lupus_dingo
ENSPANG00000001992	PSPC1	100	95.985	ENSCHIG00000016708	PSPC1	100	95.985	Capra_hircus
ENSPANG00000001992	PSPC1	80	88.152	ENSTSYG00000032882	PSPC1	93	85.511	Carlito_syrichta
ENSPANG00000001992	PSPC1	100	96.750	ENSCPOG00000000395	PSPC1	100	96.750	Cavia_porcellus
ENSPANG00000001992	PSPC1	100	98.662	ENSCCAG00000033498	PSPC1	100	98.662	Cebus_capucinus
ENSPANG00000001992	PSPC1	100	99.809	ENSCATG00000036434	PSPC1	100	99.809	Cercocebus_atys
ENSPANG00000001992	PSPC1	88	87.905	ENSCLAG00000005241	PSPC1	99	87.905	Chinchilla_lanigera
ENSPANG00000001992	PSPC1	96	97.429	ENSCHOG00000008913	PSPC1	100	91.587	Choloepus_hoffmanni
ENSPANG00000001992	PSPC1	91	95.770	ENSCPBG00000020859	PSPC1	89	94.004	Chrysemys_picta_bellii
ENSPANG00000001992	PSPC1	84	58.766	ENSCSAVG00000003533	-	53	61.786	Ciona_savignyi
ENSPANG00000001992	PSPC1	72	100.000	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSPANG00000001992	PSPC1	100	96.941	ENSCGRG00001018368	Pspc1	100	96.941	Cricetulus_griseus_chok1gshd
ENSPANG00000001992	PSPC1	100	96.941	ENSCGRG00000011724	Pspc1	100	96.941	Cricetulus_griseus_crigri
ENSPANG00000001992	PSPC1	87	78.616	ENSCVAG00000007679	-	78	68.246	Cyprinodon_variegatus
ENSPANG00000001992	PSPC1	96	77.586	ENSDARG00000006621	pspc1	100	67.633	Danio_rerio
ENSPANG00000001992	PSPC1	100	97.132	ENSDNOG00000011078	PSPC1	100	97.132	Dasypus_novemcinctus
ENSPANG00000001992	PSPC1	100	94.073	ENSDORG00000016050	Pspc1	100	94.073	Dipodomys_ordii
ENSPANG00000001992	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSPANG00000001992	PSPC1	89	73.394	ENSEBUG00000003964	-	62	72.254	Eptatretus_burgeri
ENSPANG00000001992	PSPC1	85	45.536	ENSEBUG00000010133	pspc1	72	51.273	Eptatretus_burgeri
ENSPANG00000001992	PSPC1	100	97.897	ENSEASG00005000119	PSPC1	100	97.897	Equus_asinus_asinus
ENSPANG00000001992	PSPC1	100	97.897	ENSECAG00000017286	PSPC1	100	97.897	Equus_caballus
ENSPANG00000001992	PSPC1	88	81.988	ENSEEUG00000011288	-	100	64.818	Erinaceus_europaeus
ENSPANG00000001992	PSPC1	94	79.070	ENSELUG00000003746	pspc1	78	81.651	Esox_lucius
ENSPANG00000001992	PSPC1	100	98.662	ENSFCAG00000027841	PSPC1	100	98.662	Felis_catus
ENSPANG00000001992	PSPC1	91	96.375	ENSFALG00000008750	PSPC1	99	88.145	Ficedula_albicollis
ENSPANG00000001992	PSPC1	100	94.837	ENSFDAG00000002617	PSPC1	100	94.837	Fukomys_damarensis
ENSPANG00000001992	PSPC1	79	82.986	ENSGMOG00000015074	pspc1	86	65.443	Gadus_morhua
ENSPANG00000001992	PSPC1	89	97.239	ENSGALG00000017142	PSPC1	89	94.647	Gallus_gallus
ENSPANG00000001992	PSPC1	93	75.882	ENSGAFG00000006327	pspc1	67	78.154	Gambusia_affinis
ENSPANG00000001992	PSPC1	89	73.846	ENSGACG00000014901	pspc1	92	73.860	Gasterosteus_aculeatus
ENSPANG00000001992	PSPC1	91	95.770	ENSGAGG00000019164	PSPC1	89	94.004	Gopherus_agassizii
ENSPANG00000001992	PSPC1	91	72.892	ENSGAGG00000017325	-	56	68.306	Gopherus_agassizii
ENSPANG00000001992	PSPC1	100	99.235	ENSGGOG00000003414	PSPC1	100	99.235	Gorilla_gorilla
ENSPANG00000001992	PSPC1	89	79.385	ENSHBUG00000001139	pspc1	87	69.528	Haplochromis_burtoni
ENSPANG00000001992	PSPC1	100	96.750	ENSHGLG00000018811	PSPC1	100	96.750	Heterocephalus_glaber_female
ENSPANG00000001992	PSPC1	83	98.013	ENSHGLG00100007962	PSPC1	100	92.571	Heterocephalus_glaber_male
ENSPANG00000001992	PSPC1	89	74.233	ENSHCOG00000013251	pspc1	83	71.658	Hippocampus_comes
ENSPANG00000001992	PSPC1	94	80.870	ENSIPUG00000013192	pspc1	88	73.673	Ictalurus_punctatus
ENSPANG00000001992	PSPC1	100	97.897	ENSSTOG00000026833	PSPC1	100	97.897	Ictidomys_tridecemlineatus
ENSPANG00000001992	PSPC1	100	97.323	ENSJJAG00000018334	Pspc1	100	97.323	Jaculus_jaculus
ENSPANG00000001992	PSPC1	79	69.204	ENSKMAG00000013525	-	84	54.194	Kryptolebias_marmoratus
ENSPANG00000001992	PSPC1	95	76.590	ENSLBEG00000004474	pspc1	71	77.545	Labrus_bergylta
ENSPANG00000001992	PSPC1	88	87.267	ENSLACG00000010762	PSPC1	88	84.914	Latimeria_chalumnae
ENSPANG00000001992	PSPC1	89	87.077	ENSLOCG00000010832	pspc1	91	84.165	Lepisosteus_oculatus
ENSPANG00000001992	PSPC1	100	97.132	ENSLAFG00000010968	PSPC1	100	97.132	Loxodonta_africana
ENSPANG00000001992	PSPC1	100	99.809	ENSMFAG00000032728	PSPC1	100	99.809	Macaca_fascicularis
ENSPANG00000001992	PSPC1	100	99.809	ENSMMUG00000020262	PSPC1	100	99.809	Macaca_mulatta
ENSPANG00000001992	PSPC1	100	99.809	ENSMNEG00000027401	PSPC1	100	99.809	Macaca_nemestrina
ENSPANG00000001992	PSPC1	100	100.000	ENSMLEG00000039043	PSPC1	99	100.000	Mandrillus_leucophaeus
ENSPANG00000001992	PSPC1	89	78.154	ENSMAMG00000004333	pspc1	77	71.395	Mastacembelus_armatus
ENSPANG00000001992	PSPC1	92	70.149	ENSMZEG00005005726	pspc1	87	58.672	Maylandia_zebra
ENSPANG00000001992	PSPC1	77	93.596	ENSMGAG00000015134	PSPC1	100	93.596	Meleagris_gallopavo
ENSPANG00000001992	PSPC1	99	90.948	ENSMAUG00000021067	Pspc1	99	91.126	Mesocricetus_auratus
ENSPANG00000001992	PSPC1	100	98.279	ENSMICG00000013970	PSPC1	100	98.279	Microcebus_murinus
ENSPANG00000001992	PSPC1	100	97.323	ENSMOCG00000006060	Pspc1	100	97.323	Microtus_ochrogaster
ENSPANG00000001992	PSPC1	94	54.942	ENSMMOG00000004352	pspc1	58	52.923	Mola_mola
ENSPANG00000001992	PSPC1	99	96.970	ENSMODG00000008029	PSPC1	78	96.495	Monodelphis_domestica
ENSPANG00000001992	PSPC1	94	73.639	ENSMALG00000008914	pspc1	88	67.377	Monopterus_albus
ENSPANG00000001992	PSPC1	100	97.137	MGP_CAROLIEiJ_G0019341	Pspc1	100	97.137	Mus_caroli
ENSPANG00000001992	PSPC1	100	97.328	ENSMUSG00000021938	Pspc1	100	97.328	Mus_musculus
ENSPANG00000001992	PSPC1	100	97.137	MGP_PahariEiJ_G0030359	Pspc1	100	97.137	Mus_pahari
ENSPANG00000001992	PSPC1	100	97.137	MGP_SPRETEiJ_G0020232	Pspc1	100	97.137	Mus_spretus
ENSPANG00000001992	PSPC1	100	98.279	ENSMPUG00000013347	PSPC1	100	98.279	Mustela_putorius_furo
ENSPANG00000001992	PSPC1	100	96.198	ENSMLUG00000017663	PSPC1	100	96.198	Myotis_lucifugus
ENSPANG00000001992	PSPC1	100	97.132	ENSNGAG00000011271	Pspc1	100	97.132	Nannospalax_galili
ENSPANG00000001992	PSPC1	94	68.946	ENSNBRG00000014059	pspc1	76	69.207	Neolamprologus_brichardi
ENSPANG00000001992	PSPC1	100	99.235	ENSNLEG00000001294	PSPC1	100	99.235	Nomascus_leucogenys
ENSPANG00000001992	PSPC1	84	96.094	ENSMEUG00000000476	PSPC1	84	96.094	Notamacropus_eugenii
ENSPANG00000001992	PSPC1	99	88.769	ENSODEG00000019012	-	100	84.877	Octodon_degus
ENSPANG00000001992	PSPC1	100	85.851	ENSODEG00000007817	-	100	80.340	Octodon_degus
ENSPANG00000001992	PSPC1	89	79.692	ENSONIG00000012010	pspc1	87	68.644	Oreochromis_niloticus
ENSPANG00000001992	PSPC1	76	97.494	ENSOANG00000009017	-	100	97.494	Ornithorhynchus_anatinus
ENSPANG00000001992	PSPC1	96	70.085	ENSOANG00000011381	-	99	62.830	Ornithorhynchus_anatinus
ENSPANG00000001992	PSPC1	100	98.088	ENSOCUG00000006153	PSPC1	100	98.088	Oryctolagus_cuniculus
ENSPANG00000001992	PSPC1	89	79.077	ENSORLG00000004232	-	87	64.182	Oryzias_latipes
ENSPANG00000001992	PSPC1	89	78.462	ENSORLG00020000578	PSPC1	87	65.199	Oryzias_latipes_hni
ENSPANG00000001992	PSPC1	89	79.385	ENSORLG00015017480	pspc1	82	68.421	Oryzias_latipes_hsok
ENSPANG00000001992	PSPC1	58	82.857	ENSOMEG00000003779	pspc1	96	82.775	Oryzias_melastigma
ENSPANG00000001992	PSPC1	100	98.853	ENSOGAG00000012643	PSPC1	100	98.853	Otolemur_garnettii
ENSPANG00000001992	PSPC1	100	91.048	ENSOARG00000014163	PSPC1	100	91.048	Ovis_aries
ENSPANG00000001992	PSPC1	90	99.695	ENSPPAG00000009836	PSPC1	93	99.695	Pan_paniscus
ENSPANG00000001992	PSPC1	100	98.662	ENSPPRG00000008833	PSPC1	100	98.662	Panthera_pardus
ENSPANG00000001992	PSPC1	100	83.365	ENSPTIG00000016917	PSPC1	100	83.365	Panthera_tigris_altaica
ENSPANG00000001992	PSPC1	99	99.351	ENSPTRG00000005677	PSPC1	99	99.383	Pan_troglodytes
ENSPANG00000001992	PSPC1	91	83.636	ENSPKIG00000003578	pspc1	81	77.650	Paramormyrops_kingsleyae
ENSPANG00000001992	PSPC1	91	95.468	ENSPSIG00000005168	PSPC1	89	93.790	Pelodiscus_sinensis
ENSPANG00000001992	PSPC1	85	70.476	ENSPMGG00000015135	pspc1	80	73.611	Periophthalmus_magnuspinnatus
ENSPANG00000001992	PSPC1	100	97.514	ENSPEMG00000015214	Pspc1	100	97.514	Peromyscus_maniculatus_bairdii
ENSPANG00000001992	PSPC1	70	47.692	ENSPMAG00000004618	pspc1	79	47.692	Petromyzon_marinus
ENSPANG00000001992	PSPC1	99	96.935	ENSPCIG00000017680	PSPC1	100	96.935	Phascolarctos_cinereus
ENSPANG00000001992	PSPC1	96	74.033	ENSPFOG00000003362	pspc1	88	67.865	Poecilia_formosa
ENSPANG00000001992	PSPC1	83	68.106	ENSPLAG00000004407	-	52	60.647	Poecilia_latipinna
ENSPANG00000001992	PSPC1	96	74.033	ENSPLAG00000011540	pspc1	87	67.865	Poecilia_latipinna
ENSPANG00000001992	PSPC1	96	73.481	ENSPMEG00000008322	pspc1	87	67.442	Poecilia_mexicana
ENSPANG00000001992	PSPC1	81	68.919	ENSPMEG00000001025	-	51	60.647	Poecilia_mexicana
ENSPANG00000001992	PSPC1	96	73.204	ENSPREG00000007786	pspc1	87	67.442	Poecilia_reticulata
ENSPANG00000001992	PSPC1	100	98.853	ENSPPYG00000005186	PSPC1	100	98.853	Pongo_abelii
ENSPANG00000001992	PSPC1	69	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSPANG00000001992	PSPC1	96	98.857	ENSPCOG00000014364	PSPC1	100	94.264	Propithecus_coquereli
ENSPANG00000001992	PSPC1	96	98.006	ENSPVAG00000005036	PSPC1	100	93.308	Pteropus_vampyrus
ENSPANG00000001992	PSPC1	92	70.149	ENSPNYG00000008893	pspc1	87	58.672	Pundamilia_nyererei
ENSPANG00000001992	PSPC1	89	81.734	ENSPNAG00000016511	pspc1	89	72.399	Pygocentrus_nattereri
ENSPANG00000001992	PSPC1	100	97.323	ENSRNOG00000020782	Pspc1	100	97.323	Rattus_norvegicus
ENSPANG00000001992	PSPC1	96	99.430	ENSRBIG00000036057	PSPC1	100	99.384	Rhinopithecus_bieti
ENSPANG00000001992	PSPC1	100	99.426	ENSRROG00000036334	PSPC1	100	99.426	Rhinopithecus_roxellana
ENSPANG00000001992	PSPC1	74	98.134	ENSSBOG00000028172	PSPC1	88	98.134	Saimiri_boliviensis_boliviensis
ENSPANG00000001992	PSPC1	100	91.619	ENSSHAG00000004696	PSPC1	100	91.619	Sarcophilus_harrisii
ENSPANG00000001992	PSPC1	90	85.627	ENSSFOG00015001395	pspc1	90	78.372	Scleropages_formosus
ENSPANG00000001992	PSPC1	94	75.358	ENSSMAG00000001761	pspc1	82	76.970	Scophthalmus_maximus
ENSPANG00000001992	PSPC1	89	81.231	ENSSDUG00000010651	pspc1	76	73.953	Seriola_dumerili
ENSPANG00000001992	PSPC1	90	73.476	ENSSLDG00000004284	pspc1	81	61.806	Seriola_lalandi_dorsalis
ENSPANG00000001992	PSPC1	100	88.719	ENSSARG00000000888	PSPC1	100	88.910	Sorex_araneus
ENSPANG00000001992	PSPC1	88	66.044	ENSSPUG00000001136	-	53	61.453	Sphenodon_punctatus
ENSPANG00000001992	PSPC1	98	80.055	ENSSPUG00000008550	PSPC1	89	80.851	Sphenodon_punctatus
ENSPANG00000001992	PSPC1	93	78.235	ENSSPAG00000001921	pspc1	77	72.558	Stegastes_partitus
ENSPANG00000001992	PSPC1	100	96.947	ENSSSCG00000009569	PSPC1	100	96.947	Sus_scrofa
ENSPANG00000001992	PSPC1	91	96.375	ENSTGUG00000011295	PSPC1	100	94.647	Taeniopygia_guttata
ENSPANG00000001992	PSPC1	89	71.077	ENSTRUG00000011335	pspc1	77	66.180	Takifugu_rubripes
ENSPANG00000001992	PSPC1	91	72.508	ENSTNIG00000010358	pspc1	84	66.746	Tetraodon_nigroviridis
ENSPANG00000001992	PSPC1	91	88.589	ENSTBEG00000002361	PSPC1	100	75.908	Tupaia_belangeri
ENSPANG00000001992	PSPC1	100	96.750	ENSTTRG00000003343	PSPC1	100	96.750	Tursiops_truncatus
ENSPANG00000001992	PSPC1	87	99.365	ENSUAMG00000012309	PSPC1	100	98.860	Ursus_americanus
ENSPANG00000001992	PSPC1	96	99.145	ENSUMAG00000013993	PSPC1	100	98.768	Ursus_maritimus
ENSPANG00000001992	PSPC1	76	99.248	ENSVPAG00000010029	PSPC1	100	99.248	Vicugna_pacos
ENSPANG00000001992	PSPC1	100	98.662	ENSVVUG00000006414	PSPC1	100	98.964	Vulpes_vulpes
ENSPANG00000001992	PSPC1	95	73.184	ENSXCOG00000017438	pspc1	77	76.994	Xiphophorus_couchianus
ENSPANG00000001992	PSPC1	95	73.464	ENSXMAG00000007929	pspc1	77	77.301	Xiphophorus_maculatus