EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPANG00000006387 (Gene tree)
Gene ID: 101020091
Gene Symbol: CHD1
Alias: -
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Papio_anubis
Status: putative
Strand: Minus strand
Length: 72158 bases
Position: chr6:93320141-93392298
Accession: 101020091
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPANP00000026347	ResIII	PF04851.15	3.3e-07	1	1
ENSPANP00000021126	ResIII	PF04851.15	3.3e-07	1	1
ENSPANP00000000906	ResIII	PF04851.15	3.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPANT00000020740	CHD1-201	5287	XM_017959747	ENSPANP00000000906	1712 (aa)	XP_017815236	A0A096MMS1
ENSPANT00000056846	CHD1-203	5091	-	ENSPANP00000026347	1696 (aa)	-	A0A2I3LSD9
ENSPANT00000050273	CHD1-202	5106	-	ENSPANP00000021126	1701 (aa)	-	A0A2I3LCF5

Gene Model

Click here to download ENSPANG00000006387's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPANG00000006387's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPANG00000006387	CHD1	96	54.160	ENSPANG00000033355	-	91	56.444
ENSPANG00000006387	CHD1	50	36.629	ENSPANG00000025554	CHD6	85	39.959

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPANG00000006387	CHD1	100	99.299	ENSG00000153922	CHD1	100	99.299	Homo_sapiens
ENSPANG00000006387	CHD1	68	82.627	ENSAPOG00000005764	chd1	97	82.971	Acanthochromis_polyacanthus
ENSPANG00000006387	CHD1	89	77.008	ENSAOCG00000023105	chd1	94	77.531	Amphiprion_ocellaris
ENSPANG00000006387	CHD1	89	78.198	ENSAPEG00000013544	chd1	94	78.721	Amphiprion_percula
ENSPANG00000006387	CHD1	91	77.165	ENSATEG00000010676	chd1	92	77.814	Anabas_testudineus
ENSPANG00000006387	CHD1	71	82.319	ENSAMXG00000010843	chd1	91	83.502	Astyanax_mexicanus
ENSPANG00000006387	CHD1	100	99.883	ENSCATG00000032035	CHD1	100	99.883	Cercocebus_atys
ENSPANG00000006387	CHD1	100	99.942	ENSCSAG00000015339	CHD1	100	99.942	Chlorocebus_sabaeus
ENSPANG00000006387	CHD1	54	88.781	ENSCPBG00000015831	CHD1	99	84.405	Chrysemys_picta_bellii
ENSPANG00000006387	CHD1	100	97.839	ENSCANG00000036916	CHD1	100	97.839	Colobus_angolensis_palliatus
ENSPANG00000006387	CHD1	100	95.566	ENSCGRG00001023943	Chd1	100	95.624	Cricetulus_griseus_chok1gshd
ENSPANG00000006387	CHD1	100	95.566	ENSCGRG00000008652	Chd1	100	95.624	Cricetulus_griseus_crigri
ENSPANG00000006387	CHD1	89	75.637	ENSCSEG00000009553	chd1	95	76.362	Cynoglossus_semilaevis
ENSPANG00000006387	CHD1	92	89.201	ENSEASG00005016110	CHD1	99	97.711	Equus_asinus_asinus
ENSPANG00000006387	CHD1	89	77.907	ENSELUG00000017677	chd1	93	77.921	Esox_lucius
ENSPANG00000006387	CHD1	72	81.255	ENSFHEG00000021164	chd1	87	82.759	Fundulus_heteroclitus
ENSPANG00000006387	CHD1	96	77.297	ENSGMOG00000001537	chd1	96	67.185	Gadus_morhua
ENSPANG00000006387	CHD1	92	89.547	ENSGALG00000031327	-	96	89.739	Gallus_gallus
ENSPANG00000006387	CHD1	83	81.694	ENSGAFG00000019880	chd1	92	82.844	Gambusia_affinis
ENSPANG00000006387	CHD1	100	95.713	ENSGGOG00000011463	CHD1	100	95.713	Gorilla_gorilla
ENSPANG00000006387	CHD1	88	79.178	ENSHCOG00000014222	chd1	91	79.611	Hippocampus_comes
ENSPANG00000006387	CHD1	87	81.715	ENSIPUG00000001369	chd1	95	79.610	Ictalurus_punctatus
ENSPANG00000006387	CHD1	63	95.051	ENSLAFG00000023183	CHD1	99	95.051	Loxodonta_africana
ENSPANG00000006387	CHD1	100	100.000	ENSMFAG00000031226	CHD1	100	100.000	Macaca_fascicularis
ENSPANG00000006387	CHD1	83	99.648	ENSMMUG00000014090	CHD1	99	99.648	Macaca_mulatta
ENSPANG00000006387	CHD1	100	100.000	ENSMNEG00000045073	CHD1	100	100.000	Macaca_nemestrina
ENSPANG00000006387	CHD1	100	95.932	ENSMLEG00000041096	CHD1	100	96.344	Mandrillus_leucophaeus
ENSPANG00000006387	CHD1	73	80.403	ENSMZEG00005010957	chd1	94	80.287	Maylandia_zebra
ENSPANG00000006387	CHD1	100	92.940	ENSMOCG00000019121	Chd1	100	93.057	Microtus_ochrogaster
ENSPANG00000006387	CHD1	79	78.561	ENSMALG00000013317	chd1	95	77.974	Monopterus_albus
ENSPANG00000006387	CHD1	100	94.169	MGP_CAROLIEiJ_G0021099	Chd1	99	96.950	Mus_caroli
ENSPANG00000006387	CHD1	100	94.519	ENSMUSG00000023852	Chd1	99	97.135	Mus_musculus
ENSPANG00000006387	CHD1	100	93.703	MGP_PahariEiJ_G0023414	Chd1	99	97.138	Mus_pahari
ENSPANG00000006387	CHD1	89	76.010	ENSNBRG00000006860	chd1	91	77.807	Neolamprologus_brichardi
ENSPANG00000006387	CHD1	100	96.669	ENSNLEG00000014493	CHD1	100	96.669	Nomascus_leucogenys
ENSPANG00000006387	CHD1	100	92.575	ENSOANG00000004891	CHD1	100	94.229	Ornithorhynchus_anatinus
ENSPANG00000006387	CHD1	60	77.394	ENSORLG00015016725	chd1	93	77.232	Oryzias_latipes_hsok
ENSPANG00000006387	CHD1	100	97.775	ENSPPAG00000043367	CHD1	100	97.775	Pan_paniscus
ENSPANG00000006387	CHD1	100	99.241	ENSPTRG00000017103	CHD1	100	99.241	Pan_troglodytes
ENSPANG00000006387	CHD1	91	78.318	ENSPKIG00000024719	chd1	94	78.975	Paramormyrops_kingsleyae
ENSPANG00000006387	CHD1	73	81.315	ENSPMGG00000005785	chd1	93	81.395	Periophthalmus_magnuspinnatus
ENSPANG00000006387	CHD1	100	95.683	ENSPEMG00000015939	Chd1	100	95.683	Peromyscus_maniculatus_bairdii
ENSPANG00000006387	CHD1	50	77.844	ENSPLAG00000006473	-	85	77.962	Poecilia_latipinna
ENSPANG00000006387	CHD1	97	74.805	ENSPREG00000004209	chd1	97	74.714	Poecilia_reticulata
ENSPANG00000006387	CHD1	83	95.778	ENSRNOG00000014434	Chd1	99	95.848	Rattus_norvegicus
ENSPANG00000006387	CHD1	100	96.816	ENSRBIG00000044325	CHD1	100	96.848	Rhinopithecus_bieti
ENSPANG00000006387	CHD1	100	99.533	ENSRROG00000001726	CHD1	100	99.533	Rhinopithecus_roxellana
ENSPANG00000006387	CHD1	72	81.930	ENSSFOG00015007161	chd1	90	82.602	Scleropages_formosus
ENSPANG00000006387	CHD1	79	78.661	ENSSDUG00000018314	chd1	94	78.514	Seriola_dumerili
ENSPANG00000006387	CHD1	52	83.713	ENSSLDG00000017244	chd1	84	86.019	Seriola_lalandi_dorsalis
ENSPANG00000006387	CHD1	79	79.381	ENSSPAG00000007024	chd1	95	78.571	Stegastes_partitus
ENSPANG00000006387	CHD1	86	98.078	ENSSSCG00000014177	CHD1	100	97.973	Sus_scrofa
ENSPANG00000006387	CHD1	91	75.290	ENSTRUG00000010282	chd1	96	73.084	Takifugu_rubripes
ENSPANG00000006387	CHD1	72	77.451	ENSTNIG00000007101	chd1	95	78.240	Tetraodon_nigroviridis
ENSPANG00000006387	CHD1	97	72.716	ENSXCOG00000017184	chd1	97	72.495	Xiphophorus_couchianus
ENSPANG00000006387	CHD1	77	78.582	ENSXMAG00000014538	chd1	95	78.653	Xiphophorus_maculatus