EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPANG00000024588 (Gene tree)
Gene ID: 101024396
Gene Symbol: SMG6
Alias: -
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Papio_anubis
Status: putative
Strand: Minus strand
Length: 243454 bases
Position: chr16:1799049-2042502
Accession: 101024396
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPANP00000019493	EST1	PF10374.9	9.7e-14	1	1
ENSPANP00000019493	EST1_DNA_bind	PF10373.9	5.3e-61	1	1
ENSPANP00000019493	PIN_4	PF13638.6	1.2e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPANT00000024125	SMG6-201	4260	XM_017950238	ENSPANP00000019493	1419 (aa)	XP_017805727	A0A096P2B8

Gene Model

Click here to download ENSPANG00000024588's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPANG00000024588's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPANG00000024588	SMG6	100	96.899	ENSG00000070366	SMG6	100	99.217	Homo_sapiens
ENSPANG00000024588	SMG6	83	54.894	ENSAPOG00000019448	smg6	74	55.338	Acanthochromis_polyacanthus
ENSPANG00000024588	SMG6	100	93.376	ENSAMEG00000007632	SMG6	100	93.376	Ailuropoda_melanoleuca
ENSPANG00000024588	SMG6	74	59.496	ENSACIG00000012997	smg6	78	55.457	Amphilophus_citrinellus
ENSPANG00000024588	SMG6	71	59.670	ENSAOCG00000002630	smg6	74	55.234	Amphiprion_ocellaris
ENSPANG00000024588	SMG6	71	59.670	ENSAPEG00000019101	smg6	74	55.312	Amphiprion_percula
ENSPANG00000024588	SMG6	86	54.167	ENSATEG00000006483	smg6	73	55.012	Anabas_testudineus
ENSPANG00000024588	SMG6	87	58.077	ENSACAG00000011783	SMG6	99	59.277	Anolis_carolinensis
ENSPANG00000024588	SMG6	100	95.983	ENSANAG00000035760	SMG6	100	95.983	Aotus_nancymaae
ENSPANG00000024588	SMG6	71	59.355	ENSACLG00000005288	smg6	84	53.829	Astatotilapia_calliptera
ENSPANG00000024588	SMG6	73	61.254	ENSAMXG00000017326	smg6	99	50.656	Astyanax_mexicanus
ENSPANG00000024588	SMG6	100	93.164	ENSBTAG00000000267	SMG6	100	93.164	Bos_taurus
ENSPANG00000024588	SMG6	100	95.490	ENSCJAG00000001820	SMG6	100	95.490	Callithrix_jacchus
ENSPANG00000024588	SMG6	100	93.305	ENSCAFG00000019260	SMG6	100	93.305	Canis_familiaris
ENSPANG00000024588	SMG6	100	93.305	ENSCAFG00020009770	SMG6	100	93.305	Canis_lupus_dingo
ENSPANG00000024588	SMG6	100	93.023	ENSCHIG00000021998	SMG6	100	93.023	Capra_hircus
ENSPANG00000024588	SMG6	100	93.658	ENSTSYG00000003406	SMG6	100	97.065	Carlito_syrichta
ENSPANG00000024588	SMG6	98	77.122	ENSCAPG00000016197	SMG6	99	82.670	Cavia_aperea
ENSPANG00000024588	SMG6	100	90.634	ENSCPOG00000014878	SMG6	100	90.634	Cavia_porcellus
ENSPANG00000024588	SMG6	100	95.913	ENSCCAG00000035801	SMG6	100	95.913	Cebus_capucinus
ENSPANG00000024588	SMG6	100	99.084	ENSCATG00000031956	SMG6	100	99.084	Cercocebus_atys
ENSPANG00000024588	SMG6	100	92.389	ENSCLAG00000006748	SMG6	100	92.389	Chinchilla_lanigera
ENSPANG00000024588	SMG6	100	99.366	ENSCSAG00000013800	SMG6	100	99.366	Chlorocebus_sabaeus
ENSPANG00000024588	SMG6	57	98.507	ENSCHOG00000005024	-	73	98.507	Choloepus_hoffmanni
ENSPANG00000024588	SMG6	100	72.342	ENSCPBG00000020369	SMG6	100	72.898	Chrysemys_picta_bellii
ENSPANG00000024588	SMG6	98	98.776	ENSCANG00000031764	SMG6	100	100.000	Colobus_angolensis_palliatus
ENSPANG00000024588	SMG6	55	87.724	ENSCGRG00001019595	Smg6	98	87.724	Cricetulus_griseus_chok1gshd
ENSPANG00000024588	SMG6	98	84.726	ENSCGRG00000007782	Smg6	100	84.870	Cricetulus_griseus_crigri
ENSPANG00000024588	SMG6	87	53.747	ENSCSEG00000012757	smg6	82	53.399	Cynoglossus_semilaevis
ENSPANG00000024588	SMG6	74	56.743	ENSCVAG00000012789	smg6	74	53.459	Cyprinodon_variegatus
ENSPANG00000024588	SMG6	96	55.946	ENSDARG00000100481	smg6	90	56.490	Danio_rerio
ENSPANG00000024588	SMG6	100	92.741	ENSDNOG00000048283	SMG6	100	92.741	Dasypus_novemcinctus
ENSPANG00000024588	SMG6	100	89.263	ENSDORG00000016614	Smg6	94	97.297	Dipodomys_ordii
ENSPANG00000024588	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSPANG00000024588	SMG6	73	47.461	ENSEBUG00000005059	smg6	66	49.758	Eptatretus_burgeri
ENSPANG00000024588	SMG6	99	93.931	ENSEASG00005009318	SMG6	99	93.931	Equus_asinus_asinus
ENSPANG00000024588	SMG6	99	93.649	ENSECAG00000006519	SMG6	99	93.649	Equus_caballus
ENSPANG00000024588	SMG6	100	81.889	ENSEEUG00000003493	SMG6	100	81.889	Erinaceus_europaeus
ENSPANG00000024588	SMG6	71	60.278	ENSELUG00000005934	smg6	69	55.394	Esox_lucius
ENSPANG00000024588	SMG6	100	94.151	ENSFCAG00000028817	SMG6	100	94.151	Felis_catus
ENSPANG00000024588	SMG6	98	71.693	ENSFALG00000006538	SMG6	100	71.764	Ficedula_albicollis
ENSPANG00000024588	SMG6	100	92.037	ENSFDAG00000015106	SMG6	100	92.037	Fukomys_damarensis
ENSPANG00000024588	SMG6	83	53.271	ENSFHEG00000013282	smg6	75	53.427	Fundulus_heteroclitus
ENSPANG00000024588	SMG6	61	69.159	ENSGMOG00000019077	smg6	68	69.159	Gadus_morhua
ENSPANG00000024588	SMG6	100	71.686	ENSGALG00000003108	SMG6	98	71.756	Gallus_gallus
ENSPANG00000024588	SMG6	83	53.997	ENSGAFG00000000379	smg6	74	54.225	Gambusia_affinis
ENSPANG00000024588	SMG6	91	54.182	ENSGACG00000020521	smg6	100	53.761	Gasterosteus_aculeatus
ENSPANG00000024588	SMG6	98	71.997	ENSGAGG00000025617	SMG6	100	72.566	Gopherus_agassizii
ENSPANG00000024588	SMG6	100	98.168	ENSGGOG00000017156	SMG6	100	98.168	Gorilla_gorilla
ENSPANG00000024588	SMG6	88	53.011	ENSHBUG00000021311	smg6	78	54.173	Haplochromis_burtoni
ENSPANG00000024588	SMG6	100	91.766	ENSHGLG00000012882	SMG6	100	91.766	Heterocephalus_glaber_female
ENSPANG00000024588	SMG6	100	91.837	ENSHGLG00100017815	SMG6	100	91.837	Heterocephalus_glaber_male
ENSPANG00000024588	SMG6	71	58.969	ENSHCOG00000008761	smg6	97	53.366	Hippocampus_comes
ENSPANG00000024588	SMG6	83	55.503	ENSIPUG00000012493	smg6	75	54.816	Ictalurus_punctatus
ENSPANG00000024588	SMG6	100	93.869	ENSSTOG00000028127	SMG6	100	93.869	Ictidomys_tridecemlineatus
ENSPANG00000024588	SMG6	79	88.403	ENSJJAG00000015367	Smg6	95	86.482	Jaculus_jaculus
ENSPANG00000024588	SMG6	73	59.156	ENSKMAG00000000279	smg6	91	48.876	Kryptolebias_marmoratus
ENSPANG00000024588	SMG6	55	59.024	ENSLACG00000000806	-	98	60.197	Latimeria_chalumnae
ENSPANG00000024588	SMG6	73	65.482	ENSLOCG00000006448	smg6	99	55.182	Lepisosteus_oculatus
ENSPANG00000024588	SMG6	100	92.741	ENSLAFG00000001261	SMG6	100	92.741	Loxodonta_africana
ENSPANG00000024588	SMG6	100	99.436	ENSMFAG00000003394	SMG6	100	99.436	Macaca_fascicularis
ENSPANG00000024588	SMG6	100	99.366	ENSMMUG00000023161	SMG6	100	99.366	Macaca_mulatta
ENSPANG00000024588	SMG6	100	94.167	ENSMNEG00000044592	SMG6	100	94.167	Macaca_nemestrina
ENSPANG00000024588	SMG6	98	97.044	ENSMLEG00000029353	SMG6	100	100.000	Mandrillus_leucophaeus
ENSPANG00000024588	SMG6	83	56.260	ENSMAMG00000020119	smg6	98	49.742	Mastacembelus_armatus
ENSPANG00000024588	SMG6	71	59.375	ENSMZEG00005024736	smg6	77	53.996	Maylandia_zebra
ENSPANG00000024588	SMG6	73	66.320	ENSMGAG00000005401	-	99	66.320	Meleagris_gallopavo
ENSPANG00000024588	SMG6	100	94.996	ENSMICG00000012913	SMG6	100	94.996	Microcebus_murinus
ENSPANG00000024588	SMG6	100	48.104	ENSMMOG00000010883	smg6	100	49.078	Mola_mola
ENSPANG00000024588	SMG6	100	86.217	ENSMODG00000010622	SMG6	100	86.217	Monodelphis_domestica
ENSPANG00000024588	SMG6	83	54.701	ENSMALG00000001106	smg6	73	55.607	Monopterus_albus
ENSPANG00000024588	SMG6	100	91.684	MGP_CAROLIEiJ_G0016729	Smg6	100	91.684	Mus_caroli
ENSPANG00000024588	SMG6	100	91.473	ENSMUSG00000038290	Smg6	100	91.473	Mus_musculus
ENSPANG00000024588	SMG6	100	91.050	MGP_PahariEiJ_G0017866	Smg6	100	91.050	Mus_pahari
ENSPANG00000024588	SMG6	100	91.473	MGP_SPRETEiJ_G0017572	Smg6	100	91.473	Mus_spretus
ENSPANG00000024588	SMG6	100	93.376	ENSMPUG00000013046	SMG6	100	93.376	Mustela_putorius_furo
ENSPANG00000024588	SMG6	100	92.953	ENSMLUG00000005739	SMG6	100	92.953	Myotis_lucifugus
ENSPANG00000024588	SMG6	98	90.497	ENSNGAG00000007287	Smg6	100	90.497	Nannospalax_galili
ENSPANG00000024588	SMG6	88	52.431	ENSNBRG00000009511	smg6	85	53.473	Neolamprologus_brichardi
ENSPANG00000024588	SMG6	98	97.418	ENSNLEG00000017171	SMG6	100	99.413	Nomascus_leucogenys
ENSPANG00000024588	SMG6	98	82.543	ENSMEUG00000015804	SMG6	100	82.543	Notamacropus_eugenii
ENSPANG00000024588	SMG6	62	90.950	ENSOPRG00000000579	SMG6	85	97.368	Ochotona_princeps
ENSPANG00000024588	SMG6	100	85.574	ENSODEG00000008038	SMG6	100	84.399	Octodon_degus
ENSPANG00000024588	SMG6	100	51.071	ENSONIG00000005594	smg6	100	52.032	Oreochromis_niloticus
ENSPANG00000024588	SMG6	100	92.963	ENSOCUG00000013018	SMG6	100	93.103	Oryctolagus_cuniculus
ENSPANG00000024588	SMG6	83	54.488	ENSORLG00000003317	smg6	74	54.631	Oryzias_latipes
ENSPANG00000024588	SMG6	83	54.495	ENSORLG00020015343	smg6	74	54.324	Oryzias_latipes_hni
ENSPANG00000024588	SMG6	83	54.445	ENSORLG00015020454	smg6	74	54.588	Oryzias_latipes_hsok
ENSPANG00000024588	SMG6	83	53.616	ENSOMEG00000010838	smg6	75	54.058	Oryzias_melastigma
ENSPANG00000024588	SMG6	100	94.437	ENSOGAG00000004483	SMG6	100	94.437	Otolemur_garnettii
ENSPANG00000024588	SMG6	100	91.338	ENSOARG00000015076	SMG6	100	92.924	Ovis_aries
ENSPANG00000024588	SMG6	100	97.886	ENSPPAG00000043296	SMG6	100	97.886	Pan_paniscus
ENSPANG00000024588	SMG6	100	94.221	ENSPPRG00000014581	SMG6	100	94.221	Panthera_pardus
ENSPANG00000024588	SMG6	98	94.296	ENSPTIG00000008925	SMG6	100	97.260	Panthera_tigris_altaica
ENSPANG00000024588	SMG6	100	97.956	ENSPTRG00000008544	SMG6	100	99.217	Pan_troglodytes
ENSPANG00000024588	SMG6	89	70.837	ENSPSIG00000006660	SMG6	96	70.915	Pelodiscus_sinensis
ENSPANG00000024588	SMG6	98	60.152	ENSPMGG00000000844	smg6	100	60.742	Periophthalmus_magnuspinnatus
ENSPANG00000024588	SMG6	100	92.319	ENSPEMG00000020707	Smg6	100	92.319	Peromyscus_maniculatus_bairdii
ENSPANG00000024588	SMG6	100	51.839	ENSPFOG00000012035	smg6	100	51.810	Poecilia_formosa
ENSPANG00000024588	SMG6	77	56.947	ENSPLAG00000017660	smg6	74	54.403	Poecilia_latipinna
ENSPANG00000024588	SMG6	77	56.667	ENSPMEG00000000258	smg6	74	54.717	Poecilia_mexicana
ENSPANG00000024588	SMG6	83	54.710	ENSPREG00000010066	smg6	74	54.631	Poecilia_reticulata
ENSPANG00000024588	SMG6	100	92.335	ENSPPYG00000007790	SMG6	100	92.335	Pongo_abelii
ENSPANG00000024588	SMG6	100	88.513	ENSPCAG00000000552	SMG6	100	88.513	Procavia_capensis
ENSPANG00000024588	SMG6	100	94.785	ENSPCOG00000020925	SMG6	100	94.785	Propithecus_coquereli
ENSPANG00000024588	SMG6	86	100.000	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSPANG00000024588	SMG6	88	53.840	ENSPNYG00000024151	smg6	83	55.889	Pundamilia_nyererei
ENSPANG00000024588	SMG6	85	52.418	ENSPNAG00000015480	smg6	90	47.773	Pygocentrus_nattereri
ENSPANG00000024588	SMG6	100	91.825	ENSRNOG00000003041	Smg6	96	95.894	Rattus_norvegicus
ENSPANG00000024588	SMG6	100	98.591	ENSRBIG00000024746	SMG6	100	98.591	Rhinopithecus_bieti
ENSPANG00000024588	SMG6	100	98.661	ENSRROG00000030423	SMG6	100	99.609	Rhinopithecus_roxellana
ENSPANG00000024588	SMG6	100	96.124	ENSSBOG00000022518	SMG6	100	94.503	Saimiri_boliviensis_boliviensis
ENSPANG00000024588	SMG6	98	85.427	ENSSHAG00000010045	SMG6	98	85.427	Sarcophilus_harrisii
ENSPANG00000024588	SMG6	72	62.233	ENSSFOG00015005436	smg6	73	55.120	Scleropages_formosus
ENSPANG00000024588	SMG6	83	55.400	ENSSMAG00000019777	smg6	73	55.027	Scophthalmus_maximus
ENSPANG00000024588	SMG6	83	55.191	ENSSDUG00000016412	smg6	74	55.070	Seriola_dumerili
ENSPANG00000024588	SMG6	80	54.332	ENSSLDG00000020747	smg6	77	54.126	Seriola_lalandi_dorsalis
ENSPANG00000024588	SMG6	99	70.424	ENSSPUG00000007152	SMG6	99	70.424	Sphenodon_punctatus
ENSPANG00000024588	SMG6	71	59.358	ENSSPAG00000015633	smg6	74	54.945	Stegastes_partitus
ENSPANG00000024588	SMG6	100	92.746	ENSSSCG00000017826	SMG6	100	92.746	Sus_scrofa
ENSPANG00000024588	SMG6	100	72.230	ENSTGUG00000005836	SMG6	100	72.370	Taeniopygia_guttata
ENSPANG00000024588	SMG6	100	47.903	ENSTRUG00000000358	smg6	100	47.982	Takifugu_rubripes
ENSPANG00000024588	SMG6	100	49.967	ENSTNIG00000016164	smg6	100	50.395	Tetraodon_nigroviridis
ENSPANG00000024588	SMG6	100	89.288	ENSTBEG00000011424	SMG6	100	89.288	Tupaia_belangeri
ENSPANG00000024588	SMG6	91	91.818	ENSTTRG00000001175	SMG6	91	91.818	Tursiops_truncatus
ENSPANG00000024588	SMG6	100	93.601	ENSUAMG00000025152	SMG6	100	93.588	Ursus_americanus
ENSPANG00000024588	SMG6	98	93.935	ENSUMAG00000009306	SMG6	100	93.935	Ursus_maritimus
ENSPANG00000024588	SMG6	85	92.593	ENSVPAG00000000225	SMG6	88	92.593	Vicugna_pacos
ENSPANG00000024588	SMG6	100	93.164	ENSVVUG00000021727	SMG6	100	93.164	Vulpes_vulpes
ENSPANG00000024588	SMG6	98	59.197	ENSXETG00000023799	SMG6	100	59.116	Xenopus_tropicalis
ENSPANG00000024588	SMG6	72	59.796	ENSXCOG00000009867	smg6	74	55.024	Xiphophorus_couchianus
ENSPANG00000024588	SMG6	83	54.460	ENSXMAG00000010321	smg6	74	54.105	Xiphophorus_maculatus