EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPCAG00000000552 (Gene tree)
Gene ID: -
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Procavia_capensis
Status: putative
Strand: Minus strand
Length: 243471 bases
Position: chrGeneScaffold_1767:101555-345025
Accession: 17809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCAP00000000556	EST1	PF10374.9	1.8e-15	1	1
ENSPCAP00000000556	EST1_DNA_bind	PF10373.9	4.3e-54	1	1
ENSPCAP00000000556	PIN_4	PF13638.6	2e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCAT00000000589	SMG6-201	4245	-	ENSPCAP00000000556	1414 (aa)	-	UPI00018B0CEC

Gene Model

Click here to download ENSPCAG00000000552's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCAG00000000552's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCAG00000000552	SMG6	100	87.808	ENSG00000070366	SMG6	93	95.876	Homo_sapiens
ENSPCAG00000000552	SMG6	67	59.865	ENSAPOG00000019448	smg6	71	60.000	Acanthochromis_polyacanthus
ENSPCAG00000000552	SMG6	100	88.865	ENSAMEG00000007632	SMG6	100	88.865	Ailuropoda_melanoleuca
ENSPCAG00000000552	SMG6	98	46.916	ENSACIG00000012997	smg6	98	47.420	Amphilophus_citrinellus
ENSPCAG00000000552	SMG6	67	60.169	ENSAOCG00000002630	smg6	71	59.545	Amphiprion_ocellaris
ENSPCAG00000000552	SMG6	67	60.000	ENSAPEG00000019101	smg6	71	59.773	Amphiprion_percula
ENSPCAG00000000552	SMG6	85	51.775	ENSATEG00000006483	smg6	71	60.317	Anabas_testudineus
ENSPCAG00000000552	SMG6	87	53.780	ENSACAG00000011783	SMG6	95	73.418	Anolis_carolinensis
ENSPCAG00000000552	SMG6	100	88.443	ENSANAG00000035760	SMG6	100	88.443	Aotus_nancymaae
ENSPCAG00000000552	SMG6	67	60.183	ENSACLG00000005288	smg6	80	60.183	Astatotilapia_calliptera
ENSPCAG00000000552	SMG6	72	57.835	ENSAMXG00000017326	smg6	99	48.309	Astyanax_mexicanus
ENSPCAG00000000552	SMG6	100	88.513	ENSBTAG00000000267	SMG6	100	88.513	Bos_taurus
ENSPCAG00000000552	SMG6	100	88.161	ENSCJAG00000001820	SMG6	100	88.161	Callithrix_jacchus
ENSPCAG00000000552	SMG6	100	88.654	ENSCAFG00000019260	SMG6	100	88.654	Canis_familiaris
ENSPCAG00000000552	SMG6	100	88.654	ENSCAFG00020009770	SMG6	100	88.654	Canis_lupus_dingo
ENSPCAG00000000552	SMG6	100	88.090	ENSCHIG00000021998	SMG6	100	88.090	Capra_hircus
ENSPCAG00000000552	SMG6	100	88.513	ENSTSYG00000003406	SMG6	100	88.513	Carlito_syrichta
ENSPCAG00000000552	SMG6	98	74.730	ENSCAPG00000016197	SMG6	98	82.683	Cavia_aperea
ENSPCAG00000000552	SMG6	100	86.197	ENSCPOG00000014878	SMG6	100	86.197	Cavia_porcellus
ENSPCAG00000000552	SMG6	100	88.513	ENSCCAG00000035801	SMG6	100	88.513	Cebus_capucinus
ENSPCAG00000000552	SMG6	100	88.443	ENSCATG00000031956	SMG6	100	88.443	Cercocebus_atys
ENSPCAG00000000552	SMG6	100	87.738	ENSCLAG00000006748	SMG6	100	87.738	Chinchilla_lanigera
ENSPCAG00000000552	SMG6	100	88.724	ENSCSAG00000013800	SMG6	100	88.724	Chlorocebus_sabaeus
ENSPCAG00000000552	SMG6	57	96.970	ENSCHOG00000005024	-	73	96.970	Choloepus_hoffmanni
ENSPCAG00000000552	SMG6	100	69.653	ENSCPBG00000020369	SMG6	96	84.634	Chrysemys_picta_bellii
ENSPCAG00000000552	SMG6	98	88.049	ENSCANG00000031764	SMG6	100	88.049	Colobus_angolensis_palliatus
ENSPCAG00000000552	SMG6	55	85.366	ENSCGRG00001019595	Smg6	97	85.366	Cricetulus_griseus_chok1gshd
ENSPCAG00000000552	SMG6	92	84.350	ENSCGRG00000007782	Smg6	96	84.324	Cricetulus_griseus_crigri
ENSPCAG00000000552	SMG6	86	51.466	ENSCSEG00000012757	smg6	76	62.679	Cynoglossus_semilaevis
ENSPCAG00000000552	SMG6	68	58.876	ENSCVAG00000012789	smg6	70	59.368	Cyprinodon_variegatus
ENSPCAG00000000552	SMG6	96	52.310	ENSDARG00000100481	smg6	88	53.228	Danio_rerio
ENSPCAG00000000552	SMG6	100	88.513	ENSDNOG00000048283	SMG6	100	88.513	Dasypus_novemcinctus
ENSPCAG00000000552	SMG6	100	84.211	ENSDORG00000016614	Smg6	100	84.211	Dipodomys_ordii
ENSPCAG00000000552	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSPCAG00000000552	SMG6	68	58.273	ENSEBUG00000005059	smg6	69	57.346	Eptatretus_burgeri
ENSPCAG00000000552	SMG6	99	88.920	ENSEASG00005009318	SMG6	99	88.920	Equus_asinus_asinus
ENSPCAG00000000552	SMG6	99	88.709	ENSECAG00000006519	SMG6	99	88.709	Equus_caballus
ENSPCAG00000000552	SMG6	100	82.734	ENSEEUG00000003493	SMG6	100	82.734	Erinaceus_europaeus
ENSPCAG00000000552	SMG6	71	57.275	ENSELUG00000005934	smg6	64	63.785	Esox_lucius
ENSPCAG00000000552	SMG6	100	89.288	ENSFCAG00000028817	SMG6	100	89.288	Felis_catus
ENSPCAG00000000552	SMG6	98	69.110	ENSFALG00000006538	SMG6	100	69.181	Ficedula_albicollis
ENSPCAG00000000552	SMG6	100	87.667	ENSFDAG00000015106	SMG6	100	87.667	Fukomys_damarensis
ENSPCAG00000000552	SMG6	79	58.014	ENSFHEG00000013282	smg6	71	58.503	Fundulus_heteroclitus
ENSPCAG00000000552	SMG6	52	67.757	ENSGMOG00000019077	smg6	64	69.118	Gadus_morhua
ENSPCAG00000000552	SMG6	100	68.589	ENSGALG00000003108	SMG6	98	68.659	Gallus_gallus
ENSPCAG00000000552	SMG6	83	50.824	ENSGAFG00000000379	smg6	70	58.957	Gambusia_affinis
ENSPCAG00000000552	SMG6	87	63.183	ENSGACG00000020521	smg6	95	62.500	Gasterosteus_aculeatus
ENSPCAG00000000552	SMG6	98	69.225	ENSGAGG00000025617	SMG6	96	85.122	Gopherus_agassizii
ENSPCAG00000000552	SMG6	100	88.513	ENSGGOG00000017156	SMG6	100	88.513	Gorilla_gorilla
ENSPCAG00000000552	SMG6	84	60.183	ENSHBUG00000021311	smg6	74	60.183	Haplochromis_burtoni
ENSPCAG00000000552	SMG6	100	87.333	ENSHGLG00000012882	SMG6	100	87.333	Heterocephalus_glaber_female
ENSPCAG00000000552	SMG6	100	87.403	ENSHGLG00100017815	SMG6	100	87.403	Heterocephalus_glaber_male
ENSPCAG00000000552	SMG6	71	56.119	ENSHCOG00000008761	smg6	91	60.941	Hippocampus_comes
ENSPCAG00000000552	SMG6	83	53.082	ENSIPUG00000012493	smg6	75	52.720	Ictalurus_punctatus
ENSPCAG00000000552	SMG6	100	88.654	ENSSTOG00000028127	SMG6	100	88.654	Ictidomys_tridecemlineatus
ENSPCAG00000000552	SMG6	79	82.620	ENSJJAG00000015367	Smg6	95	80.936	Jaculus_jaculus
ENSPCAG00000000552	SMG6	85	51.409	ENSKMAG00000000279	smg6	73	60.455	Kryptolebias_marmoratus
ENSPCAG00000000552	SMG6	86	50.755	ENSLBEG00000002184	smg6	72	58.559	Labrus_bergylta
ENSPCAG00000000552	SMG6	56	56.379	ENSLACG00000000806	-	98	57.524	Latimeria_chalumnae
ENSPCAG00000000552	SMG6	73	61.776	ENSLOCG00000006448	smg6	87	57.029	Lepisosteus_oculatus
ENSPCAG00000000552	SMG6	100	90.486	ENSLAFG00000001261	SMG6	100	90.486	Loxodonta_africana
ENSPCAG00000000552	SMG6	100	88.724	ENSMFAG00000003394	SMG6	100	88.724	Macaca_fascicularis
ENSPCAG00000000552	SMG6	100	88.654	ENSMMUG00000023161	SMG6	100	88.654	Macaca_mulatta
ENSPCAG00000000552	SMG6	100	84.507	ENSMNEG00000044592	SMG6	100	84.296	Macaca_nemestrina
ENSPCAG00000000552	SMG6	98	85.941	ENSMLEG00000029353	SMG6	100	88.550	Mandrillus_leucophaeus
ENSPCAG00000000552	SMG6	84	52.334	ENSMAMG00000020119	smg6	80	52.414	Mastacembelus_armatus
ENSPCAG00000000552	SMG6	67	60.183	ENSMZEG00005024736	smg6	74	60.183	Maylandia_zebra
ENSPCAG00000000552	SMG6	74	61.851	ENSMGAG00000005401	-	99	61.851	Meleagris_gallopavo
ENSPCAG00000000552	SMG6	100	89.570	ENSMICG00000012913	SMG6	100	89.570	Microcebus_murinus
ENSPCAG00000000552	SMG6	100	45.931	ENSMMOG00000010883	smg6	100	46.768	Mola_mola
ENSPCAG00000000552	SMG6	100	81.716	ENSMODG00000010622	SMG6	100	81.716	Monodelphis_domestica
ENSPCAG00000000552	SMG6	100	86.187	MGP_CAROLIEiJ_G0016729	Smg6	96	91.496	Mus_caroli
ENSPCAG00000000552	SMG6	100	85.976	ENSMUSG00000038290	Smg6	95	91.445	Mus_musculus
ENSPCAG00000000552	SMG6	100	85.976	MGP_PahariEiJ_G0017866	Smg6	95	91.150	Mus_pahari
ENSPCAG00000000552	SMG6	100	85.976	MGP_SPRETEiJ_G0017572	Smg6	95	91.740	Mus_spretus
ENSPCAG00000000552	SMG6	100	88.724	ENSMPUG00000013046	SMG6	100	88.724	Mustela_putorius_furo
ENSPCAG00000000552	SMG6	100	88.302	ENSMLUG00000005739	SMG6	100	88.302	Myotis_lucifugus
ENSPCAG00000000552	SMG6	98	85.817	ENSNGAG00000007287	Smg6	100	85.817	Nannospalax_galili
ENSPCAG00000000552	SMG6	88	50.113	ENSNBRG00000009511	smg6	85	50.335	Neolamprologus_brichardi
ENSPCAG00000000552	SMG6	98	87.661	ENSNLEG00000017171	SMG6	99	88.627	Nomascus_leucogenys
ENSPCAG00000000552	SMG6	98	77.874	ENSMEUG00000015804	SMG6	100	77.874	Notamacropus_eugenii
ENSPCAG00000000552	SMG6	58	96.970	ENSOPRG00000000579	SMG6	84	96.842	Ochotona_princeps
ENSPCAG00000000552	SMG6	100	79.480	ENSODEG00000008038	SMG6	100	79.480	Octodon_degus
ENSPCAG00000000552	SMG6	96	60.412	ENSONIG00000005594	smg6	96	60.641	Oreochromis_niloticus
ENSPCAG00000000552	SMG6	100	87.755	ENSOCUG00000013018	SMG6	100	87.755	Oryctolagus_cuniculus
ENSPCAG00000000552	SMG6	79	57.692	ENSORLG00000003317	smg6	71	58.597	Oryzias_latipes
ENSPCAG00000000552	SMG6	79	57.859	ENSORLG00020015343	smg6	71	57.859	Oryzias_latipes_hni
ENSPCAG00000000552	SMG6	79	57.240	ENSORLG00015020454	smg6	71	58.145	Oryzias_latipes_hsok
ENSPCAG00000000552	SMG6	79	58.050	ENSOMEG00000010838	smg6	71	58.277	Oryzias_melastigma
ENSPCAG00000000552	SMG6	100	88.803	ENSOGAG00000004483	SMG6	100	88.803	Otolemur_garnettii
ENSPCAG00000000552	SMG6	100	86.479	ENSOARG00000015076	SMG6	100	87.942	Ovis_aries
ENSPCAG00000000552	SMG6	100	88.443	ENSPPAG00000043296	SMG6	100	88.443	Pan_paniscus
ENSPCAG00000000552	SMG6	100	89.429	ENSPPRG00000014581	SMG6	100	89.429	Panthera_pardus
ENSPCAG00000000552	SMG6	98	89.386	ENSPTIG00000008925	SMG6	99	89.804	Panthera_tigris_altaica
ENSPCAG00000000552	SMG6	100	88.302	ENSPTRG00000008544	SMG6	100	88.302	Pan_troglodytes
ENSPCAG00000000552	SMG6	100	88.513	ENSPANG00000024588	SMG6	100	88.513	Papio_anubis
ENSPCAG00000000552	SMG6	89	67.972	ENSPSIG00000006660	SMG6	96	67.972	Pelodiscus_sinensis
ENSPCAG00000000552	SMG6	98	57.069	ENSPMGG00000000844	smg6	96	61.215	Periophthalmus_magnuspinnatus
ENSPCAG00000000552	SMG6	100	87.385	ENSPEMG00000020707	Smg6	100	87.385	Peromyscus_maniculatus_bairdii
ENSPCAG00000000552	SMG6	100	48.690	ENSPFOG00000012035	smg6	96	61.772	Poecilia_formosa
ENSPCAG00000000552	SMG6	83	51.181	ENSPLAG00000017660	smg6	71	58.730	Poecilia_latipinna
ENSPCAG00000000552	SMG6	77	52.891	ENSPMEG00000000258	smg6	71	59.410	Poecilia_mexicana
ENSPCAG00000000552	SMG6	83	51.260	ENSPREG00000010066	smg6	71	58.957	Poecilia_reticulata
ENSPCAG00000000552	SMG6	100	83.263	ENSPPYG00000007790	SMG6	100	83.263	Pongo_abelii
ENSPCAG00000000552	SMG6	100	89.288	ENSPCOG00000020925	SMG6	100	89.288	Propithecus_coquereli
ENSPCAG00000000552	SMG6	86	100.000	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSPCAG00000000552	SMG6	88	51.349	ENSPNYG00000024151	smg6	83	52.538	Pundamilia_nyererei
ENSPCAG00000000552	SMG6	86	49.651	ENSPNAG00000015480	smg6	98	48.879	Pygocentrus_nattereri
ENSPCAG00000000552	SMG6	100	86.328	ENSRNOG00000003041	Smg6	96	92.375	Rattus_norvegicus
ENSPCAG00000000552	SMG6	100	88.302	ENSRBIG00000024746	SMG6	100	88.302	Rhinopithecus_bieti
ENSPCAG00000000552	SMG6	100	88.372	ENSRROG00000030423	SMG6	100	88.372	Rhinopithecus_roxellana
ENSPCAG00000000552	SMG6	100	88.724	ENSSBOG00000022518	SMG6	100	87.033	Saimiri_boliviensis_boliviensis
ENSPCAG00000000552	SMG6	98	81.407	ENSSHAG00000010045	SMG6	98	81.407	Sarcophilus_harrisii
ENSPCAG00000000552	SMG6	73	58.508	ENSSFOG00015005436	smg6	70	53.066	Scleropages_formosus
ENSPCAG00000000552	SMG6	83	52.329	ENSSMAG00000019777	smg6	70	58.108	Scophthalmus_maximus
ENSPCAG00000000552	SMG6	79	59.864	ENSSDUG00000016412	smg6	70	59.685	Seriola_dumerili
ENSPCAG00000000552	SMG6	76	57.468	ENSSLDG00000020747	smg6	73	57.286	Seriola_lalandi_dorsalis
ENSPCAG00000000552	SMG6	99	66.574	ENSSPUG00000007152	SMG6	99	66.504	Sphenodon_punctatus
ENSPCAG00000000552	SMG6	83	51.681	ENSSPAG00000015633	smg6	71	59.545	Stegastes_partitus
ENSPCAG00000000552	SMG6	100	87.887	ENSSSCG00000017826	SMG6	100	87.887	Sus_scrofa
ENSPCAG00000000552	SMG6	100	69.538	ENSTGUG00000005836	SMG6	100	69.678	Taeniopygia_guttata
ENSPCAG00000000552	SMG6	100	46.109	ENSTRUG00000000358	smg6	100	46.370	Takifugu_rubripes
ENSPCAG00000000552	SMG6	100	47.600	ENSTNIG00000016164	smg6	96	61.663	Tetraodon_nigroviridis
ENSPCAG00000000552	SMG6	94	97.613	ENSTBEG00000011424	SMG6	94	97.613	Tupaia_belangeri
ENSPCAG00000000552	SMG6	91	85.167	ENSTTRG00000001175	SMG6	91	85.167	Tursiops_truncatus
ENSPCAG00000000552	SMG6	100	88.819	ENSUAMG00000025152	SMG6	100	88.748	Ursus_americanus
ENSPCAG00000000552	SMG6	98	89.025	ENSUMAG00000009306	SMG6	100	89.025	Ursus_maritimus
ENSPCAG00000000552	SMG6	85	100.000	ENSVPAG00000000225	SMG6	88	100.000	Vicugna_pacos
ENSPCAG00000000552	SMG6	100	88.584	ENSVVUG00000021727	SMG6	100	88.584	Vulpes_vulpes
ENSPCAG00000000552	SMG6	98	56.912	ENSXETG00000023799	SMG6	96	68.689	Xenopus_tropicalis
ENSPCAG00000000552	SMG6	71	56.355	ENSXCOG00000009867	smg6	71	61.374	Xiphophorus_couchianus
ENSPCAG00000000552	SMG6	83	51.610	ENSXMAG00000010321	smg6	70	59.184	Xiphophorus_maculatus