EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPCAG00000000684 (Gene tree)
Gene ID: -
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Procavia_capensis
Status: putative
Strand: Minus strand
Length: 132444 bases
Position: chrGeneScaffold_4411:10968-143411
Accession: 17854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCAP00000000675	Upf2	PF04050.14	2.5e-33	1	1
ENSPCAP00000000675	MIF4G	PF02854.19	2.7e-47	1	2
ENSPCAP00000000675	MIF4G	PF02854.19	2.7e-47	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCAT00000000716	UPF2-201	3786	-	ENSPCAP00000000675	1261 (aa)	-	UPI00018B0149

Gene Model

Click here to download ENSPCAG00000000684's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCAG00000000684's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCAG00000000684	UPF2	100	83.333	ENSG00000151461	UPF2	100	83.333	Homo_sapiens
ENSPCAG00000000684	UPF2	89	76.763	ENSAPOG00000015837	UPF2	91	76.141	Acanthochromis_polyacanthus
ENSPCAG00000000684	UPF2	100	84.579	ENSAMEG00000004586	UPF2	100	84.579	Ailuropoda_melanoleuca
ENSPCAG00000000684	UPF2	99	70.469	ENSACIG00000018078	UPF2	100	70.547	Amphilophus_citrinellus
ENSPCAG00000000684	UPF2	100	70.593	ENSAOCG00000016766	UPF2	100	70.671	Amphiprion_ocellaris
ENSPCAG00000000684	UPF2	100	70.671	ENSAPEG00000019084	UPF2	100	70.749	Amphiprion_percula
ENSPCAG00000000684	UPF2	100	70.373	ENSATEG00000021677	UPF2	99	70.483	Anabas_testudineus
ENSPCAG00000000684	UPF2	91	81.451	ENSAPLG00000010287	UPF2	90	80.900	Anas_platyrhynchos
ENSPCAG00000000684	UPF2	100	78.993	ENSACAG00000009259	UPF2	100	78.993	Anolis_carolinensis
ENSPCAG00000000684	UPF2	99	74.214	ENSANAG00000028451	UPF2	99	74.214	Aotus_nancymaae
ENSPCAG00000000684	UPF2	100	70.983	ENSACLG00000012696	UPF2	95	81.314	Astatotilapia_calliptera
ENSPCAG00000000684	UPF2	99	70.859	ENSAMXG00000013700	UPF2	99	71.283	Astyanax_mexicanus
ENSPCAG00000000684	UPF2	100	84.579	ENSBTAG00000000288	UPF2	100	84.579	Bos_taurus
ENSPCAG00000000684	UPF2	56	30.114	WBGene00004881	smg-3	61	30.114	Caenorhabditis_elegans
ENSPCAG00000000684	UPF2	86	95.216	ENSCJAG00000020685	UPF2	88	95.216	Callithrix_jacchus
ENSPCAG00000000684	UPF2	100	84.579	ENSCAFG00000004839	UPF2	100	84.579	Canis_familiaris
ENSPCAG00000000684	UPF2	96	99.507	ENSCAFG00020005882	UPF2	100	99.482	Canis_lupus_dingo
ENSPCAG00000000684	UPF2	100	84.658	ENSCHIG00000020359	UPF2	100	84.658	Capra_hircus
ENSPCAG00000000684	UPF2	100	82.848	ENSTSYG00000000935	UPF2	97	98.864	Carlito_syrichta
ENSPCAG00000000684	UPF2	80	84.954	ENSCAPG00000016658	UPF2	83	84.167	Cavia_aperea
ENSPCAG00000000684	UPF2	99	83.109	ENSCPOG00000008809	UPF2	99	83.109	Cavia_porcellus
ENSPCAG00000000684	UPF2	85	95.851	ENSCCAG00000035991	UPF2	89	95.851	Cebus_capucinus
ENSPCAG00000000684	UPF2	100	83.412	ENSCATG00000032679	UPF2	100	83.412	Cercocebus_atys
ENSPCAG00000000684	UPF2	100	82.848	ENSCLAG00000011434	UPF2	100	82.376	Chinchilla_lanigera
ENSPCAG00000000684	UPF2	100	83.491	ENSCSAG00000013372	UPF2	100	83.491	Chlorocebus_sabaeus
ENSPCAG00000000684	UPF2	82	95.455	ENSCHOG00000000422	UPF2	85	95.455	Choloepus_hoffmanni
ENSPCAG00000000684	UPF2	99	79.354	ENSCPBG00000027823	UPF2	91	85.097	Chrysemys_picta_bellii
ENSPCAG00000000684	UPF2	78	41.986	ENSCSAVG00000007772	-	79	41.560	Ciona_savignyi
ENSPCAG00000000684	UPF2	99	77.344	ENSCANG00000040396	UPF2	100	77.891	Colobus_angolensis_palliatus
ENSPCAG00000000684	UPF2	90	87.420	ENSCGRG00001019347	Upf2	100	83.556	Cricetulus_griseus_chok1gshd
ENSPCAG00000000684	UPF2	90	87.420	ENSCGRG00000017993	Upf2	100	83.556	Cricetulus_griseus_crigri
ENSPCAG00000000684	UPF2	86	71.311	ENSCSEG00000003520	UPF2	85	71.127	Cynoglossus_semilaevis
ENSPCAG00000000684	UPF2	98	70.556	ENSCVAG00000006167	UPF2	86	74.932	Cyprinodon_variegatus
ENSPCAG00000000684	UPF2	100	84.422	ENSDNOG00000018160	UPF2	100	84.422	Dasypus_novemcinctus
ENSPCAG00000000684	UPF2	100	83.084	ENSDORG00000002478	Upf2	100	83.320	Dipodomys_ordii
ENSPCAG00000000684	UPF2	85	31.234	FBgn0029992	Upf2	85	32.943	Drosophila_melanogaster
ENSPCAG00000000684	UPF2	60	100.000	ENSETEG00000011583	-	58	100.000	Echinops_telfairi
ENSPCAG00000000684	UPF2	59	61.835	ENSEBUG00000012448	-	73	73.333	Eptatretus_burgeri
ENSPCAG00000000684	UPF2	93	97.222	ENSEASG00005019274	UPF2	99	97.222	Equus_asinus_asinus
ENSPCAG00000000684	UPF2	100	83.871	ENSECAG00000017022	UPF2	100	83.399	Equus_caballus
ENSPCAG00000000684	UPF2	82	93.930	ENSEEUG00000007819	UPF2	82	93.930	Erinaceus_europaeus
ENSPCAG00000000684	UPF2	99	70.000	ENSELUG00000012014	UPF2	100	69.930	Esox_lucius
ENSPCAG00000000684	UPF2	100	98.343	ENSFCAG00000005785	UPF2	93	98.343	Felis_catus
ENSPCAG00000000684	UPF2	91	85.032	ENSFALG00000001889	UPF2	98	80.252	Ficedula_albicollis
ENSPCAG00000000684	UPF2	100	82.376	ENSFDAG00000014348	UPF2	100	82.140	Fukomys_damarensis
ENSPCAG00000000684	UPF2	99	70.672	ENSFHEG00000009826	UPF2	86	75.182	Fundulus_heteroclitus
ENSPCAG00000000684	UPF2	85	74.176	ENSGMOG00000005557	UPF2	85	74.244	Gadus_morhua
ENSPCAG00000000684	UPF2	100	80.346	ENSGALG00000033772	UPF2	100	80.346	Gallus_gallus
ENSPCAG00000000684	UPF2	86	74.818	ENSGAFG00000020867	UPF2	100	69.267	Gambusia_affinis
ENSPCAG00000000684	UPF2	85	75.046	ENSGACG00000001080	UPF2	100	70.156	Gasterosteus_aculeatus
ENSPCAG00000000684	UPF2	90	84.573	ENSGAGG00000002700	UPF2	100	79.544	Gopherus_agassizii
ENSPCAG00000000684	UPF2	100	83.333	ENSGGOG00000001479	UPF2	100	83.333	Gorilla_gorilla
ENSPCAG00000000684	UPF2	100	70.749	ENSHBUG00000004249	UPF2	95	81.237	Haplochromis_burtoni
ENSPCAG00000000684	UPF2	100	83.006	ENSHGLG00000015176	-	100	82.533	Heterocephalus_glaber_female
ENSPCAG00000000684	UPF2	90	80.055	ENSHGLG00000003822	-	91	79.779	Heterocephalus_glaber_female
ENSPCAG00000000684	UPF2	90	86.937	ENSHGLG00100010036	UPF2	91	86.385	Heterocephalus_glaber_male
ENSPCAG00000000684	UPF2	100	68.765	ENSHCOG00000004025	UPF2	99	68.842	Hippocampus_comes
ENSPCAG00000000684	UPF2	100	69.657	ENSIPUG00000015524	UPF2	100	70.203	Ictalurus_punctatus
ENSPCAG00000000684	UPF2	100	83.163	ENSSTOG00000013075	UPF2	100	83.399	Ictidomys_tridecemlineatus
ENSPCAG00000000684	UPF2	90	85.950	ENSJJAG00000004913	Upf2	90	85.950	Jaculus_jaculus
ENSPCAG00000000684	UPF2	86	75.204	ENSKMAG00000001071	UPF2	86	75.023	Kryptolebias_marmoratus
ENSPCAG00000000684	UPF2	100	70.785	ENSLBEG00000016394	-	100	73.877	Labrus_bergylta
ENSPCAG00000000684	UPF2	79	67.191	ENSLBEG00000000728	-	93	67.289	Labrus_bergylta
ENSPCAG00000000684	UPF2	85	73.723	ENSLACG00000015945	UPF2	94	74.214	Latimeria_chalumnae
ENSPCAG00000000684	UPF2	86	78.832	ENSLOCG00000015698	UPF2	100	73.522	Lepisosteus_oculatus
ENSPCAG00000000684	UPF2	100	83.412	ENSMFAG00000043865	UPF2	100	83.412	Macaca_fascicularis
ENSPCAG00000000684	UPF2	100	83.412	ENSMMUG00000008241	UPF2	100	83.412	Macaca_mulatta
ENSPCAG00000000684	UPF2	80	79.726	ENSMNEG00000008062	UPF2	99	79.726	Macaca_nemestrina
ENSPCAG00000000684	UPF2	91	97.831	ENSMLEG00000036120	UPF2	95	98.068	Mandrillus_leucophaeus
ENSPCAG00000000684	UPF2	100	70.584	ENSMAMG00000018276	UPF2	100	70.428	Mastacembelus_armatus
ENSPCAG00000000684	UPF2	100	70.983	ENSMZEG00005021595	UPF2	95	81.314	Maylandia_zebra
ENSPCAG00000000684	UPF2	90	84.191	ENSMGAG00000004573	UPF2	99	79.528	Meleagris_gallopavo
ENSPCAG00000000684	UPF2	100	81.275	ENSMAUG00000016512	Upf2	100	81.275	Mesocricetus_auratus
ENSPCAG00000000684	UPF2	95	98.469	ENSMICG00000001716	UPF2	99	98.446	Microcebus_murinus
ENSPCAG00000000684	UPF2	100	81.983	ENSMOCG00000008263	Upf2	100	82.219	Microtus_ochrogaster
ENSPCAG00000000684	UPF2	85	73.218	ENSMMOG00000006528	UPF2	86	73.035	Mola_mola
ENSPCAG00000000684	UPF2	100	82.219	ENSMODG00000016794	UPF2	100	82.219	Monodelphis_domestica
ENSPCAG00000000684	UPF2	99	70.367	ENSMALG00000002663	UPF2	100	70.055	Monopterus_albus
ENSPCAG00000000684	UPF2	100	82.691	MGP_CAROLIEiJ_G0023157	Upf2	92	94.606	Mus_caroli
ENSPCAG00000000684	UPF2	100	82.769	ENSMUSG00000043241	Upf2	92	94.191	Mus_musculus
ENSPCAG00000000684	UPF2	100	82.455	MGP_PahariEiJ_G0019217	Upf2	92	93.776	Mus_pahari
ENSPCAG00000000684	UPF2	100	83.006	MGP_SPRETEiJ_G0024075	Upf2	92	94.191	Mus_spretus
ENSPCAG00000000684	UPF2	100	84.264	ENSMPUG00000001064	UPF2	100	84.264	Mustela_putorius_furo
ENSPCAG00000000684	UPF2	99	82.875	ENSMLUG00000000228	UPF2	100	82.875	Myotis_lucifugus
ENSPCAG00000000684	UPF2	100	70.905	ENSNBRG00000013629	UPF2	95	81.314	Neolamprologus_brichardi
ENSPCAG00000000684	UPF2	100	83.333	ENSNLEG00000012058	UPF2	100	83.333	Nomascus_leucogenys
ENSPCAG00000000684	UPF2	51	96.923	ENSMEUG00000002180	-	54	96.923	Notamacropus_eugenii
ENSPCAG00000000684	UPF2	77	96.507	ENSOPRG00000006801	-	77	96.507	Ochotona_princeps
ENSPCAG00000000684	UPF2	100	82.612	ENSODEG00000001290	UPF2	100	82.140	Octodon_degus
ENSPCAG00000000684	UPF2	100	70.983	ENSONIG00000017991	UPF2	100	71.061	Oreochromis_niloticus
ENSPCAG00000000684	UPF2	95	87.856	ENSOCUG00000006230	UPF2	90	87.856	Oryctolagus_cuniculus
ENSPCAG00000000684	UPF2	86	74.387	ENSORLG00000017189	UPF2	100	69.883	Oryzias_latipes
ENSPCAG00000000684	UPF2	86	74.478	ENSORLG00020005969	UPF2	100	69.883	Oryzias_latipes_hni
ENSPCAG00000000684	UPF2	86	74.478	ENSORLG00015005713	UPF2	100	69.961	Oryzias_latipes_hsok
ENSPCAG00000000684	UPF2	85	70.765	ENSOMEG00000023420	UPF2	93	71.107	Oryzias_melastigma
ENSPCAG00000000684	UPF2	100	83.478	ENSOGAG00000005796	UPF2	100	83.478	Otolemur_garnettii
ENSPCAG00000000684	UPF2	100	84.525	ENSOARG00000014587	UPF2	100	84.525	Ovis_aries
ENSPCAG00000000684	UPF2	99	79.515	ENSPPAG00000037953	UPF2	100	80.157	Pan_paniscus
ENSPCAG00000000684	UPF2	100	84.107	ENSPPRG00000000690	UPF2	100	84.107	Panthera_pardus
ENSPCAG00000000684	UPF2	100	84.107	ENSPTIG00000008867	UPF2	100	84.107	Panthera_tigris_altaica
ENSPCAG00000000684	UPF2	100	83.333	ENSPTRG00000002291	UPF2	100	83.333	Pan_troglodytes
ENSPCAG00000000684	UPF2	100	83.412	ENSPANG00000023399	UPF2	100	83.412	Papio_anubis
ENSPCAG00000000684	UPF2	86	75.365	ENSPKIG00000025502	UPF2	100	69.813	Paramormyrops_kingsleyae
ENSPCAG00000000684	UPF2	99	68.028	ENSPMGG00000005259	UPF2	86	73.925	Periophthalmus_magnuspinnatus
ENSPCAG00000000684	UPF2	80	95.370	ENSPEMG00000015731	Upf2	89	95.814	Peromyscus_maniculatus_bairdii
ENSPCAG00000000684	UPF2	90	86.501	ENSPCIG00000006656	UPF2	100	81.983	Phascolarctos_cinereus
ENSPCAG00000000684	UPF2	86	75.547	ENSPFOG00000017118	UPF2	100	69.782	Poecilia_formosa
ENSPCAG00000000684	UPF2	86	75.456	ENSPLAG00000005094	UPF2	100	69.704	Poecilia_latipinna
ENSPCAG00000000684	UPF2	86	75.456	ENSPMEG00000017009	UPF2	100	69.704	Poecilia_mexicana
ENSPCAG00000000684	UPF2	85	74.610	ENSPREG00000021880	UPF2	100	69.538	Poecilia_reticulata
ENSPCAG00000000684	UPF2	66	84.450	ENSPPYG00000002089	-	100	84.450	Pongo_abelii
ENSPCAG00000000684	UPF2	99	80.221	ENSPCOG00000021656	UPF2	100	79.984	Propithecus_coquereli
ENSPCAG00000000684	UPF2	89	95.021	ENSPVAG00000017286	UPF2	89	95.021	Pteropus_vampyrus
ENSPCAG00000000684	UPF2	95	73.549	ENSPNYG00000017096	UPF2	92	94.872	Pundamilia_nyererei
ENSPCAG00000000684	UPF2	100	70.749	ENSPNAG00000009357	UPF2	100	71.295	Pygocentrus_nattereri
ENSPCAG00000000684	UPF2	99	77.394	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
ENSPCAG00000000684	UPF2	90	87.580	ENSRBIG00000037780	UPF2	91	87.856	Rhinopithecus_bieti
ENSPCAG00000000684	UPF2	100	82.940	ENSRROG00000043547	UPF2	90	87.879	Rhinopithecus_roxellana
ENSPCAG00000000684	UPF2	90	87.328	ENSSBOG00000020012	UPF2	90	87.603	Saimiri_boliviensis_boliviensis
ENSPCAG00000000684	UPF2	86	76.503	ENSSFOG00015023788	upf2	100	71.005	Scleropages_formosus
ENSPCAG00000000684	UPF2	80	80.204	ENSSMAG00000007637	UPF2	95	80.041	Scophthalmus_maximus
ENSPCAG00000000684	UPF2	100	70.827	ENSSDUG00000017244	UPF2	99	70.827	Seriola_dumerili
ENSPCAG00000000684	UPF2	99	69.381	ENSSLDG00000016866	UPF2	100	69.146	Seriola_lalandi_dorsalis
ENSPCAG00000000684	UPF2	100	81.747	ENSSARG00000008615	UPF2	100	81.747	Sorex_araneus
ENSPCAG00000000684	UPF2	90	82.629	ENSSPUG00000014544	UPF2	90	82.629	Sphenodon_punctatus
ENSPCAG00000000684	UPF2	62	94.787	ENSSSCG00000011117	-	95	94.787	Sus_scrofa
ENSPCAG00000000684	UPF2	90	85.083	ENSTGUG00000002163	-	100	80.363	Taeniopygia_guttata
ENSPCAG00000000684	UPF2	100	69.969	ENSTRUG00000007519	UPF2	99	69.969	Takifugu_rubripes
ENSPCAG00000000684	UPF2	100	67.368	ENSTNIG00000004453	UPF2	89	74.727	Tetraodon_nigroviridis
ENSPCAG00000000684	UPF2	93	75.783	ENSTBEG00000012679	UPF2	93	76.037	Tupaia_belangeri
ENSPCAG00000000684	UPF2	100	83.792	ENSTTRG00000016388	UPF2	100	83.792	Tursiops_truncatus
ENSPCAG00000000684	UPF2	92	98.611	ENSUAMG00000023560	UPF2	98	100.000	Ursus_americanus
ENSPCAG00000000684	UPF2	100	84.500	ENSUMAG00000012953	UPF2	95	84.500	Ursus_maritimus
ENSPCAG00000000684	UPF2	85	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSPCAG00000000684	UPF2	100	84.500	ENSVVUG00000006166	UPF2	100	84.500	Vulpes_vulpes
ENSPCAG00000000684	UPF2	90	79.159	ENSXETG00000033103	UPF2	86	78.519	Xenopus_tropicalis
ENSPCAG00000000684	UPF2	85	74.954	ENSXCOG00000011604	UPF2	86	74.954	Xiphophorus_couchianus
ENSPCAG00000000684	UPF2	86	75.274	ENSXMAG00000017209	UPF2	97	69.291	Xiphophorus_maculatus