EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPCAG00000001892 (Gene tree)
Gene ID: -
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Procavia_capensis
Status: putative
Strand: Plus strand
Length: 15189 bases
Position: chrGeneScaffold_1611:22343-37531
Accession: 2327
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCAP00000001771	zf-CCCH	PF00642.24	4.4e-19	1	2
ENSPCAP00000001771	zf-CCCH	PF00642.24	4.4e-19	2	2
ENSPCAP00000001771	zf-CCHC	PF00098.23	2.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCAT00000001882	CPSF4-201	810	-	ENSPCAP00000001771	269 (aa)	-	UPI00018ADEB3

Gene Model

Click here to download ENSPCAG00000001892's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCAG00000001892's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCAG00000001892	CPSF4	100	98.141	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSPCAG00000001892	CPSF4	67	75.275	ENSAPOG00000004921	cpsf4	100	75.275	Acanthochromis_polyacanthus
ENSPCAG00000001892	CPSF4	100	98.885	ENSAMEG00000006252	CPSF4	100	98.885	Ailuropoda_melanoleuca
ENSPCAG00000001892	CPSF4	100	79.926	ENSACIG00000009248	cpsf4	100	78.067	Amphilophus_citrinellus
ENSPCAG00000001892	CPSF4	100	84.815	ENSAOCG00000019616	cpsf4	100	84.815	Amphiprion_ocellaris
ENSPCAG00000001892	CPSF4	100	84.815	ENSAPEG00000011679	cpsf4	100	84.815	Amphiprion_percula
ENSPCAG00000001892	CPSF4	100	84.926	ENSATEG00000007010	cpsf4	100	84.926	Anabas_testudineus
ENSPCAG00000001892	CPSF4	100	92.937	ENSACAG00000012941	CPSF4	89	92.937	Anolis_carolinensis
ENSPCAG00000001892	CPSF4	100	98.141	ENSANAG00000021360	CPSF4	100	98.141	Aotus_nancymaae
ENSPCAG00000001892	CPSF4	100	84.074	ENSACLG00000010374	cpsf4	100	84.074	Astatotilapia_calliptera
ENSPCAG00000001892	CPSF4	100	84.871	ENSAMXG00000031647	cpsf4	100	85.609	Astyanax_mexicanus
ENSPCAG00000001892	CPSF4	100	88.476	ENSBTAG00000002090	CPSF4	100	88.476	Bos_taurus
ENSPCAG00000001892	CPSF4	100	98.141	ENSCJAG00000015826	CPSF4	100	98.141	Callithrix_jacchus
ENSPCAG00000001892	CPSF4	100	98.513	ENSCAFG00000015036	CPSF4	100	98.513	Canis_familiaris
ENSPCAG00000001892	CPSF4	100	92.193	ENSCAFG00020014462	CPSF4	100	92.193	Canis_lupus_dingo
ENSPCAG00000001892	CPSF4	100	98.141	ENSCHIG00000014313	CPSF4	100	98.141	Capra_hircus
ENSPCAG00000001892	CPSF4	89	82.158	ENSTSYG00000008195	-	99	78.800	Carlito_syrichta
ENSPCAG00000001892	CPSF4	100	81.111	ENSTSYG00000014604	-	100	78.148	Carlito_syrichta
ENSPCAG00000001892	CPSF4	100	88.848	ENSTSYG00000005712	-	100	88.848	Carlito_syrichta
ENSPCAG00000001892	CPSF4	81	99.539	ENSCAPG00000013881	CPSF4	86	99.539	Cavia_aperea
ENSPCAG00000001892	CPSF4	100	89.591	ENSCPOG00000001783	CPSF4	100	89.591	Cavia_porcellus
ENSPCAG00000001892	CPSF4	100	98.141	ENSCCAG00000028291	CPSF4	100	98.141	Cebus_capucinus
ENSPCAG00000001892	CPSF4	100	98.141	ENSCATG00000038440	CPSF4	100	98.141	Cercocebus_atys
ENSPCAG00000001892	CPSF4	100	98.513	ENSCLAG00000007050	CPSF4	100	98.513	Chinchilla_lanigera
ENSPCAG00000001892	CPSF4	100	98.141	ENSCSAG00000017795	CPSF4	100	98.141	Chlorocebus_sabaeus
ENSPCAG00000001892	CPSF4	80	94.907	ENSCPBG00000020869	CPSF4	100	94.907	Chrysemys_picta_bellii
ENSPCAG00000001892	CPSF4	61	80.606	ENSCPBG00000010269	-	99	80.606	Chrysemys_picta_bellii
ENSPCAG00000001892	CPSF4	97	55.939	ENSCING00000021080	-	97	55.939	Ciona_intestinalis
ENSPCAG00000001892	CPSF4	96	53.357	ENSCSAVG00000011469	-	97	53.025	Ciona_savignyi
ENSPCAG00000001892	CPSF4	100	98.141	ENSCANG00000019384	CPSF4	100	98.141	Colobus_angolensis_palliatus
ENSPCAG00000001892	CPSF4	100	89.591	ENSCGRG00001024184	Cpsf4	100	89.591	Cricetulus_griseus_chok1gshd
ENSPCAG00000001892	CPSF4	100	98.885	ENSCGRG00000013892	Cpsf4	100	98.885	Cricetulus_griseus_crigri
ENSPCAG00000001892	CPSF4	100	84.444	ENSCSEG00000019055	cpsf4	100	84.444	Cynoglossus_semilaevis
ENSPCAG00000001892	CPSF4	100	82.963	ENSCVAG00000016528	cpsf4	100	82.963	Cyprinodon_variegatus
ENSPCAG00000001892	CPSF4	100	85.240	ENSDARG00000020217	cpsf4	100	85.240	Danio_rerio
ENSPCAG00000001892	CPSF4	100	98.513	ENSDNOG00000006344	CPSF4	100	98.513	Dasypus_novemcinctus
ENSPCAG00000001892	CPSF4	81	99.078	ENSDORG00000000742	Cpsf4	100	99.078	Dipodomys_ordii
ENSPCAG00000001892	CPSF4	100	54.949	FBgn0015621	Clp	99	54.110	Drosophila_melanogaster
ENSPCAG00000001892	CPSF4	70	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSPCAG00000001892	CPSF4	99	64.794	ENSEBUG00000012552	cpsf4	98	64.794	Eptatretus_burgeri
ENSPCAG00000001892	CPSF4	100	89.591	ENSEASG00005002487	CPSF4	100	89.591	Equus_asinus_asinus
ENSPCAG00000001892	CPSF4	100	98.885	ENSECAG00000007525	CPSF4	100	98.885	Equus_caballus
ENSPCAG00000001892	CPSF4	63	99.029	ENSEEUG00000002158	CPSF4	73	99.029	Erinaceus_europaeus
ENSPCAG00000001892	CPSF4	100	82.847	ENSELUG00000011481	cpsf4	100	80.657	Esox_lucius
ENSPCAG00000001892	CPSF4	100	98.885	ENSFCAG00000015070	CPSF4	100	98.885	Felis_catus
ENSPCAG00000001892	CPSF4	100	84.758	ENSFALG00000013799	CPSF4	100	83.271	Ficedula_albicollis
ENSPCAG00000001892	CPSF4	61	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSPCAG00000001892	CPSF4	90	98.354	ENSFDAG00000014092	CPSF4	100	98.354	Fukomys_damarensis
ENSPCAG00000001892	CPSF4	100	82.963	ENSFHEG00000010880	cpsf4	100	82.963	Fundulus_heteroclitus
ENSPCAG00000001892	CPSF4	100	77.491	ENSGMOG00000002330	cpsf4	100	76.015	Gadus_morhua
ENSPCAG00000001892	CPSF4	99	38.421	ENSGALG00000004441	-	92	36.842	Gallus_gallus
ENSPCAG00000001892	CPSF4	100	84.758	ENSGALG00000004714	CPSF4	100	83.643	Gallus_gallus
ENSPCAG00000001892	CPSF4	100	82.593	ENSGAFG00000010580	cpsf4	100	82.222	Gambusia_affinis
ENSPCAG00000001892	CPSF4	100	77.860	ENSGACG00000007792	cpsf4	100	76.753	Gasterosteus_aculeatus
ENSPCAG00000001892	CPSF4	61	80.606	ENSGAGG00000020579	-	92	80.606	Gopherus_agassizii
ENSPCAG00000001892	CPSF4	100	94.424	ENSGAGG00000021835	CPSF4	100	94.424	Gopherus_agassizii
ENSPCAG00000001892	CPSF4	100	98.141	ENSGGOG00000015131	CPSF4	100	98.141	Gorilla_gorilla
ENSPCAG00000001892	CPSF4	100	84.074	ENSHBUG00000013699	cpsf4	100	84.074	Haplochromis_burtoni
ENSPCAG00000001892	CPSF4	100	97.048	ENSHGLG00000017150	CPSF4	100	97.048	Heterocephalus_glaber_female
ENSPCAG00000001892	CPSF4	87	95.763	ENSHGLG00100009215	-	100	95.763	Heterocephalus_glaber_male
ENSPCAG00000001892	CPSF4	78	65.072	ENSHGLG00100017302	-	100	52.788	Heterocephalus_glaber_male
ENSPCAG00000001892	CPSF4	100	80.741	ENSHCOG00000004397	cpsf4	100	78.148	Hippocampus_comes
ENSPCAG00000001892	CPSF4	100	83.764	ENSIPUG00000017147	cpsf4	100	84.926	Ictalurus_punctatus
ENSPCAG00000001892	CPSF4	100	98.885	ENSSTOG00000001688	CPSF4	100	98.885	Ictidomys_tridecemlineatus
ENSPCAG00000001892	CPSF4	100	98.513	ENSJJAG00000019426	Cpsf4	100	98.513	Jaculus_jaculus
ENSPCAG00000001892	CPSF4	100	81.852	ENSKMAG00000015642	cpsf4	100	81.852	Kryptolebias_marmoratus
ENSPCAG00000001892	CPSF4	100	60.370	ENSLACG00000018470	-	100	60.370	Latimeria_chalumnae
ENSPCAG00000001892	CPSF4	100	88.519	ENSLACG00000010938	CPSF4	100	88.519	Latimeria_chalumnae
ENSPCAG00000001892	CPSF4	100	88.848	ENSLOCG00000004814	cpsf4	100	88.848	Lepisosteus_oculatus
ENSPCAG00000001892	CPSF4	100	99.257	ENSLAFG00000000159	CPSF4	100	99.257	Loxodonta_africana
ENSPCAG00000001892	CPSF4	100	98.141	ENSMFAG00000001462	CPSF4	100	98.141	Macaca_fascicularis
ENSPCAG00000001892	CPSF4	100	98.141	ENSMMUG00000019191	CPSF4	100	98.141	Macaca_mulatta
ENSPCAG00000001892	CPSF4	100	98.141	ENSMNEG00000032306	CPSF4	100	98.141	Macaca_nemestrina
ENSPCAG00000001892	CPSF4	100	98.141	ENSMLEG00000034721	CPSF4	100	98.141	Mandrillus_leucophaeus
ENSPCAG00000001892	CPSF4	100	84.444	ENSMAMG00000006244	cpsf4	100	83.883	Mastacembelus_armatus
ENSPCAG00000001892	CPSF4	100	84.074	ENSMZEG00005007515	cpsf4	100	84.074	Maylandia_zebra
ENSPCAG00000001892	CPSF4	87	83.404	ENSMGAG00000004235	CPSF4	100	82.128	Meleagris_gallopavo
ENSPCAG00000001892	CPSF4	100	98.885	ENSMAUG00000021253	Cpsf4	100	98.885	Mesocricetus_auratus
ENSPCAG00000001892	CPSF4	100	98.141	ENSMICG00000017429	CPSF4	100	98.141	Microcebus_murinus
ENSPCAG00000001892	CPSF4	100	98.885	ENSMOCG00000014901	Cpsf4	100	98.885	Microtus_ochrogaster
ENSPCAG00000001892	CPSF4	100	84.074	ENSMMOG00000001813	cpsf4	100	84.074	Mola_mola
ENSPCAG00000001892	CPSF4	100	95.911	ENSMODG00000001367	CPSF4	100	95.911	Monodelphis_domestica
ENSPCAG00000001892	CPSF4	100	82.593	ENSMALG00000012611	cpsf4	100	82.593	Monopterus_albus
ENSPCAG00000001892	CPSF4	100	98.885	MGP_CAROLIEiJ_G0028012	Cpsf4	100	98.885	Mus_caroli
ENSPCAG00000001892	CPSF4	100	98.885	ENSMUSG00000029625	Cpsf4	100	98.885	Mus_musculus
ENSPCAG00000001892	CPSF4	100	98.885	MGP_PahariEiJ_G0024581	Cpsf4	100	98.885	Mus_pahari
ENSPCAG00000001892	CPSF4	100	98.513	MGP_SPRETEiJ_G0029013	Cpsf4	100	98.513	Mus_spretus
ENSPCAG00000001892	CPSF4	100	98.885	ENSMPUG00000016508	CPSF4	100	98.885	Mustela_putorius_furo
ENSPCAG00000001892	CPSF4	87	87.234	ENSMLUG00000010980	CPSF4	100	87.234	Myotis_lucifugus
ENSPCAG00000001892	CPSF4	100	98.513	ENSNGAG00000001567	Cpsf4	100	98.513	Nannospalax_galili
ENSPCAG00000001892	CPSF4	91	83.333	ENSNBRG00000003943	cpsf4	98	83.333	Neolamprologus_brichardi
ENSPCAG00000001892	CPSF4	100	95.167	ENSNLEG00000011074	CPSF4	100	95.167	Nomascus_leucogenys
ENSPCAG00000001892	CPSF4	100	95.911	ENSMEUG00000006955	CPSF4	100	95.911	Notamacropus_eugenii
ENSPCAG00000001892	CPSF4	100	98.141	ENSOPRG00000013663	CPSF4	100	98.141	Ochotona_princeps
ENSPCAG00000001892	CPSF4	99	75.472	ENSODEG00000018283	-	91	73.208	Octodon_degus
ENSPCAG00000001892	CPSF4	100	98.885	ENSODEG00000011181	-	100	98.885	Octodon_degus
ENSPCAG00000001892	CPSF4	100	74.359	ENSODEG00000009779	-	100	74.359	Octodon_degus
ENSPCAG00000001892	CPSF4	100	84.074	ENSONIG00000008495	cpsf4	100	84.074	Oreochromis_niloticus
ENSPCAG00000001892	CPSF4	100	54.513	ENSOANG00000009568	-	100	51.986	Ornithorhynchus_anatinus
ENSPCAG00000001892	CPSF4	87	94.468	ENSOANG00000007729	CPSF4	100	94.468	Ornithorhynchus_anatinus
ENSPCAG00000001892	CPSF4	100	98.141	ENSOCUG00000002437	CPSF4	70	98.141	Oryctolagus_cuniculus
ENSPCAG00000001892	CPSF4	100	82.900	ENSORLG00000022798	cpsf4	100	82.900	Oryzias_latipes
ENSPCAG00000001892	CPSF4	100	82.900	ENSORLG00020008548	cpsf4	100	82.900	Oryzias_latipes_hni
ENSPCAG00000001892	CPSF4	100	82.528	ENSORLG00015019575	cpsf4	100	82.528	Oryzias_latipes_hsok
ENSPCAG00000001892	CPSF4	100	81.413	ENSOMEG00000005176	cpsf4	100	81.413	Oryzias_melastigma
ENSPCAG00000001892	CPSF4	100	98.513	ENSOGAG00000010884	CPSF4	100	98.513	Otolemur_garnettii
ENSPCAG00000001892	CPSF4	100	87.546	ENSOARG00000018668	CPSF4	100	87.179	Ovis_aries
ENSPCAG00000001892	CPSF4	100	97.770	ENSPPAG00000043355	CPSF4	100	97.770	Pan_paniscus
ENSPCAG00000001892	CPSF4	100	98.885	ENSPPRG00000003134	CPSF4	100	98.885	Panthera_pardus
ENSPCAG00000001892	CPSF4	90	98.760	ENSPTIG00000005604	CPSF4	90	98.760	Panthera_tigris_altaica
ENSPCAG00000001892	CPSF4	100	97.770	ENSPTRG00000019453	CPSF4	100	97.770	Pan_troglodytes
ENSPCAG00000001892	CPSF4	100	98.141	ENSPANG00000023123	CPSF4	100	98.141	Papio_anubis
ENSPCAG00000001892	CPSF4	100	83.212	ENSPKIG00000014278	cpsf4	100	83.212	Paramormyrops_kingsleyae
ENSPCAG00000001892	CPSF4	80	59.447	ENSPSIG00000018198	-	99	58.333	Pelodiscus_sinensis
ENSPCAG00000001892	CPSF4	80	94.444	ENSPSIG00000011229	CPSF4	100	94.444	Pelodiscus_sinensis
ENSPCAG00000001892	CPSF4	100	73.606	ENSPMGG00000017735	cpsf4	100	72.325	Periophthalmus_magnuspinnatus
ENSPCAG00000001892	CPSF4	100	98.885	ENSPEMG00000004508	Cpsf4	100	98.885	Peromyscus_maniculatus_bairdii
ENSPCAG00000001892	CPSF4	100	95.911	ENSPCIG00000024776	CPSF4	100	95.911	Phascolarctos_cinereus
ENSPCAG00000001892	CPSF4	100	82.593	ENSPFOG00000014912	cpsf4	100	82.222	Poecilia_formosa
ENSPCAG00000001892	CPSF4	100	75.465	ENSPLAG00000009599	cpsf4	100	75.465	Poecilia_latipinna
ENSPCAG00000001892	CPSF4	100	82.593	ENSPMEG00000009790	cpsf4	100	82.222	Poecilia_mexicana
ENSPCAG00000001892	CPSF4	100	82.222	ENSPREG00000018166	cpsf4	100	79.259	Poecilia_reticulata
ENSPCAG00000001892	CPSF4	87	97.436	ENSPPYG00000017378	CPSF4	100	97.436	Pongo_abelii
ENSPCAG00000001892	CPSF4	100	98.513	ENSPCOG00000012771	CPSF4	100	98.513	Propithecus_coquereli
ENSPCAG00000001892	CPSF4	100	92.565	ENSPVAG00000007531	CPSF4	100	92.565	Pteropus_vampyrus
ENSPCAG00000001892	CPSF4	100	84.074	ENSPNYG00000018559	cpsf4	100	84.074	Pundamilia_nyererei
ENSPCAG00000001892	CPSF4	100	85.978	ENSPNAG00000003736	cpsf4	100	86.716	Pygocentrus_nattereri
ENSPCAG00000001892	CPSF4	100	89.219	ENSRNOG00000000985	Cpsf4	100	89.219	Rattus_norvegicus
ENSPCAG00000001892	CPSF4	87	98.291	ENSRBIG00000033886	CPSF4	100	98.291	Rhinopithecus_bieti
ENSPCAG00000001892	CPSF4	100	88.848	ENSRROG00000040431	CPSF4	100	88.848	Rhinopithecus_roxellana
ENSPCAG00000001892	CPSF4	100	98.141	ENSSBOG00000020493	CPSF4	100	98.141	Saimiri_boliviensis_boliviensis
ENSPCAG00000001892	CPSF4	100	95.911	ENSSHAG00000011533	CPSF4	100	95.911	Sarcophilus_harrisii
ENSPCAG00000001892	CPSF4	100	84.420	ENSSFOG00015007883	cpsf4	100	85.145	Scleropages_formosus
ENSPCAG00000001892	CPSF4	100	78.810	ENSSMAG00000006374	cpsf4	100	77.323	Scophthalmus_maximus
ENSPCAG00000001892	CPSF4	100	84.074	ENSSDUG00000018887	cpsf4	100	84.074	Seriola_dumerili
ENSPCAG00000001892	CPSF4	100	84.074	ENSSLDG00000019078	cpsf4	100	84.074	Seriola_lalandi_dorsalis
ENSPCAG00000001892	CPSF4	87	98.718	ENSSARG00000012416	CPSF4	100	98.718	Sorex_araneus
ENSPCAG00000001892	CPSF4	96	58.846	ENSSPUG00000014803	-	97	57.364	Sphenodon_punctatus
ENSPCAG00000001892	CPSF4	100	93.309	ENSSPUG00000003549	CPSF4	100	93.309	Sphenodon_punctatus
ENSPCAG00000001892	CPSF4	100	80.297	ENSSPAG00000006174	cpsf4	100	77.323	Stegastes_partitus
ENSPCAG00000001892	CPSF4	100	89.219	ENSSSCG00000026896	CPSF4	100	89.219	Sus_scrofa
ENSPCAG00000001892	CPSF4	100	83.764	ENSTGUG00000007552	CPSF4	100	82.288	Taeniopygia_guttata
ENSPCAG00000001892	CPSF4	100	81.319	ENSTRUG00000024220	cpsf4	100	81.319	Takifugu_rubripes
ENSPCAG00000001892	CPSF4	100	80.370	ENSTNIG00000006265	cpsf4	100	81.852	Tetraodon_nigroviridis
ENSPCAG00000001892	CPSF4	87	89.316	ENSTBEG00000011406	CPSF4	100	89.316	Tupaia_belangeri
ENSPCAG00000001892	CPSF4	100	77.323	ENSTTRG00000003007	CPSF4	100	77.323	Tursiops_truncatus
ENSPCAG00000001892	CPSF4	92	88.259	ENSUAMG00000008051	CPSF4	85	88.259	Ursus_americanus
ENSPCAG00000001892	CPSF4	100	89.219	ENSUMAG00000009474	CPSF4	100	89.219	Ursus_maritimus
ENSPCAG00000001892	CPSF4	100	89.219	ENSVVUG00000008824	CPSF4	100	89.219	Vulpes_vulpes
ENSPCAG00000001892	CPSF4	100	87.455	ENSXETG00000009892	cpsf4	100	87.455	Xenopus_tropicalis
ENSPCAG00000001892	CPSF4	99	60.075	ENSXETG00000004641	cpsf4l	99	60.075	Xenopus_tropicalis
ENSPCAG00000001892	CPSF4	100	82.222	ENSXCOG00000016040	cpsf4	100	82.222	Xiphophorus_couchianus
ENSPCAG00000001892	CPSF4	100	82.593	ENSXMAG00000024670	cpsf4	100	82.222	Xiphophorus_maculatus