EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPCAG00000003341 (Gene tree)
Gene ID: -
Gene Symbol: PABPC4
Alias: APP-1|iPABP
Full Name: poly(A) binding protein cytoplasmic 4
Gene Type: protein_coding
Species: Procavia_capensis
Status: putative
Strand: Minus strand
Length: 13080 bases
Position: chrGeneScaffold_1021:12579-25658
Accession: 8557
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCAP00000003146	PABP	PF00658.18	1.1e-31	1	1
ENSPCAP00000003146	RRM_5	PF13893.6	3.7e-08	1	1
ENSPCAP00000003146	RRM_1	PF00076.22	1.1e-81	1	4
ENSPCAP00000003146	RRM_1	PF00076.22	1.1e-81	2	4
ENSPCAP00000003146	RRM_1	PF00076.22	1.1e-81	3	4
ENSPCAP00000003146	RRM_1	PF00076.22	1.1e-81	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCAT00000003350	PABPC4-201	1983	-	ENSPCAP00000003146	660 (aa)	-	UPI00018AE08F

Gene Model

Click here to download ENSPCAG00000003341's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCAG00000003341's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPCAG00000003341	PABPC4	53	81.250	ENSPCAG00000011787	-	75	81.250
ENSPCAG00000003341	PABPC4	99	92.188	ENSPCAG00000007096	PABPC1	83	92.188
ENSPCAG00000003341	PABPC4	57	33.333	ENSPCAG00000008215	ELAVL4	69	33.735
ENSPCAG00000003341	PABPC4	54	66.929	ENSPCAG00000015577	PABPC5	95	66.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCAG00000003341	PABPC4	100	94.242	ENSG00000090621	PABPC4	100	100.000	Homo_sapiens
ENSPCAG00000003341	PABPC4	99	74.545	ENSAPOG00000001161	pabpc4	100	75.037	Acanthochromis_polyacanthus
ENSPCAG00000003341	PABPC4	98	51.613	ENSAMEG00000015083	-	99	51.306	Ailuropoda_melanoleuca
ENSPCAG00000003341	PABPC4	100	94.394	ENSAMEG00000011535	-	100	94.394	Ailuropoda_melanoleuca
ENSPCAG00000003341	PABPC4	100	75.336	ENSACIG00000023343	pabpc4	100	75.934	Amphilophus_citrinellus
ENSPCAG00000003341	PABPC4	99	75.000	ENSAOCG00000021529	pabpc4	91	86.111	Amphiprion_ocellaris
ENSPCAG00000003341	PABPC4	99	75.000	ENSAPEG00000019196	pabpc4	100	75.336	Amphiprion_percula
ENSPCAG00000003341	PABPC4	99	73.716	ENSATEG00000007402	pabpc4	100	74.478	Anabas_testudineus
ENSPCAG00000003341	PABPC4	99	82.853	ENSAPLG00000009729	-	100	82.853	Anas_platyrhynchos
ENSPCAG00000003341	PABPC4	99	80.272	ENSACAG00000002544	PABPC4	100	80.272	Anolis_carolinensis
ENSPCAG00000003341	PABPC4	100	94.091	ENSANAG00000025079	PABPC4	100	94.091	Aotus_nancymaae
ENSPCAG00000003341	PABPC4	100	74.738	ENSACLG00000019558	pabpc4	100	75.336	Astatotilapia_calliptera
ENSPCAG00000003341	PABPC4	99	71.364	ENSAMXG00000018779	pabpc4	99	71.970	Astyanax_mexicanus
ENSPCAG00000003341	PABPC4	100	91.982	ENSBTAG00000017125	PABPC4	100	91.982	Bos_taurus
ENSPCAG00000003341	PABPC4	78	71.429	ENSCJAG00000045953	-	92	71.324	Callithrix_jacchus
ENSPCAG00000003341	PABPC4	100	93.939	ENSCJAG00000002512	-	100	93.939	Callithrix_jacchus
ENSPCAG00000003341	PABPC4	99	93.960	ENSCAFG00000003081	PABPC4	100	90.303	Canis_familiaris
ENSPCAG00000003341	PABPC4	100	94.545	ENSCAFG00020004161	PABPC4	100	94.545	Canis_lupus_dingo
ENSPCAG00000003341	PABPC4	100	72.424	ENSCHIG00000023385	-	100	72.424	Capra_hircus
ENSPCAG00000003341	PABPC4	100	94.545	ENSCHIG00000019398	-	100	94.545	Capra_hircus
ENSPCAG00000003341	PABPC4	100	94.242	ENSTSYG00000006532	PABPC4	100	94.242	Carlito_syrichta
ENSPCAG00000003341	PABPC4	99	93.921	ENSCAPG00000015984	PABPC4	100	93.921	Cavia_aperea
ENSPCAG00000003341	PABPC4	100	94.091	ENSCPOG00000009552	PABPC4	100	94.091	Cavia_porcellus
ENSPCAG00000003341	PABPC4	100	94.091	ENSCCAG00000037306	PABPC4	100	94.091	Cebus_capucinus
ENSPCAG00000003341	PABPC4	100	94.394	ENSCATG00000042164	PABPC4	100	94.394	Cercocebus_atys
ENSPCAG00000003341	PABPC4	100	93.939	ENSCLAG00000011899	PABPC4	100	93.939	Chinchilla_lanigera
ENSPCAG00000003341	PABPC4	100	94.394	ENSCSAG00000001135	PABPC4	100	94.394	Chlorocebus_sabaeus
ENSPCAG00000003341	PABPC4	82	93.269	ENSCHOG00000005327	PABPC4	81	93.269	Choloepus_hoffmanni
ENSPCAG00000003341	PABPC4	99	83.156	ENSCPBG00000001038	PABPC4	100	83.156	Chrysemys_picta_bellii
ENSPCAG00000003341	PABPC4	99	94.163	ENSCANG00000034177	PABPC4	100	94.163	Colobus_angolensis_palliatus
ENSPCAG00000003341	PABPC4	100	92.319	ENSCGRG00001018166	Pabpc4	100	92.319	Cricetulus_griseus_chok1gshd
ENSPCAG00000003341	PABPC4	99	89.924	ENSCGRG00000009777	Pabpc4	100	89.924	Cricetulus_griseus_crigri
ENSPCAG00000003341	PABPC4	100	74.290	ENSCSEG00000000130	pabpc4	100	74.738	Cynoglossus_semilaevis
ENSPCAG00000003341	PABPC4	99	75.076	ENSCVAG00000019246	pabpc4	100	75.988	Cyprinodon_variegatus
ENSPCAG00000003341	PABPC4	99	76.783	ENSDARG00000059259	pabpc4	100	76.452	Danio_rerio
ENSPCAG00000003341	PABPC4	98	93.966	ENSDNOG00000018444	-	99	93.966	Dasypus_novemcinctus
ENSPCAG00000003341	PABPC4	100	91.818	ENSDORG00000011581	Pabpc4	100	91.818	Dipodomys_ordii
ENSPCAG00000003341	PABPC4	94	59.051	ENSETEG00000009172	-	99	59.130	Echinops_telfairi
ENSPCAG00000003341	PABPC4	100	100.000	ENSETEG00000018453	-	84	100.000	Echinops_telfairi
ENSPCAG00000003341	PABPC4	99	69.440	ENSEBUG00000000992	pabpc4	99	77.049	Eptatretus_burgeri
ENSPCAG00000003341	PABPC4	97	69.444	ENSEBUG00000013782	pabpc4	99	68.825	Eptatretus_burgeri
ENSPCAG00000003341	PABPC4	100	94.697	ENSEASG00005014119	PABPC4	100	94.697	Equus_asinus_asinus
ENSPCAG00000003341	PABPC4	100	94.697	ENSECAG00000009396	PABPC4	100	94.697	Equus_caballus
ENSPCAG00000003341	PABPC4	100	91.667	ENSEEUG00000002962	PABPC4	100	91.667	Erinaceus_europaeus
ENSPCAG00000003341	PABPC4	99	75.647	ENSELUG00000003195	pabpc4	99	76.284	Esox_lucius
ENSPCAG00000003341	PABPC4	100	94.697	ENSFCAG00000015254	-	100	94.697	Felis_catus
ENSPCAG00000003341	PABPC4	99	82.398	ENSFALG00000000543	PABPC4	100	82.398	Ficedula_albicollis
ENSPCAG00000003341	PABPC4	100	94.242	ENSFDAG00000020016	-	100	94.242	Fukomys_damarensis
ENSPCAG00000003341	PABPC4	90	62.346	ENSFDAG00000010581	-	100	59.160	Fukomys_damarensis
ENSPCAG00000003341	PABPC4	100	75.000	ENSFHEG00000007548	pabpc4	93	88.571	Fundulus_heteroclitus
ENSPCAG00000003341	PABPC4	99	74.398	ENSGMOG00000019025	pabpc4	99	75.000	Gadus_morhua
ENSPCAG00000003341	PABPC4	99	83.156	ENSGALG00000003800	PABPC4	100	83.156	Gallus_gallus
ENSPCAG00000003341	PABPC4	100	75.075	ENSGAFG00000018195	pabpc4	98	95.556	Gambusia_affinis
ENSPCAG00000003341	PABPC4	100	73.393	ENSGACG00000007179	pabpc4	100	74.141	Gasterosteus_aculeatus
ENSPCAG00000003341	PABPC4	99	83.005	ENSGAGG00000001888	PABPC4	100	83.005	Gopherus_agassizii
ENSPCAG00000003341	PABPC4	100	94.242	ENSGGOG00000004002	PABPC4	100	94.242	Gorilla_gorilla
ENSPCAG00000003341	PABPC4	100	74.888	ENSHBUG00000020206	pabpc4	100	75.486	Haplochromis_burtoni
ENSPCAG00000003341	PABPC4	100	94.394	ENSHGLG00000011162	PABPC4	100	94.394	Heterocephalus_glaber_female
ENSPCAG00000003341	PABPC4	100	92.121	ENSHGLG00100001580	PABPC4	100	92.121	Heterocephalus_glaber_male
ENSPCAG00000003341	PABPC4	100	74.401	ENSHCOG00000012694	pabpc4	100	74.551	Hippocampus_comes
ENSPCAG00000003341	PABPC4	98	75.000	ENSIPUG00000016620	pabpc4	99	75.676	Ictalurus_punctatus
ENSPCAG00000003341	PABPC4	100	91.970	ENSSTOG00000010416	PABPC4	100	91.970	Ictidomys_tridecemlineatus
ENSPCAG00000003341	PABPC4	100	90.455	ENSJJAG00000007781	Pabpc4	100	90.455	Jaculus_jaculus
ENSPCAG00000003341	PABPC4	99	83.753	ENSKMAG00000013597	pabpc4	99	74.849	Kryptolebias_marmoratus
ENSPCAG00000003341	PABPC4	100	74.405	ENSLBEG00000013654	pabpc4	100	74.665	Labrus_bergylta
ENSPCAG00000003341	PABPC4	99	79.638	ENSLACG00000011907	PABPC4	100	79.638	Latimeria_chalumnae
ENSPCAG00000003341	PABPC4	99	77.560	ENSLOCG00000001877	pabpc4	99	77.410	Lepisosteus_oculatus
ENSPCAG00000003341	PABPC4	100	94.848	ENSLAFG00000000151	PABPC4	100	94.848	Loxodonta_africana
ENSPCAG00000003341	PABPC4	100	94.394	ENSMFAG00000041481	PABPC4	100	94.394	Macaca_fascicularis
ENSPCAG00000003341	PABPC4	100	94.394	ENSMMUG00000007497	PABPC4	100	94.394	Macaca_mulatta
ENSPCAG00000003341	PABPC4	100	94.242	ENSMNEG00000043054	PABPC4	100	94.242	Macaca_nemestrina
ENSPCAG00000003341	PABPC4	100	94.394	ENSMLEG00000040716	PABPC4	100	94.394	Mandrillus_leucophaeus
ENSPCAG00000003341	PABPC4	99	74.697	ENSMAMG00000010025	pabpc4	99	74.887	Mastacembelus_armatus
ENSPCAG00000003341	PABPC4	100	74.589	ENSMZEG00005006141	pabpc4	92	87.736	Maylandia_zebra
ENSPCAG00000003341	PABPC4	99	82.047	ENSMGAG00000005408	PABPC4	100	82.047	Meleagris_gallopavo
ENSPCAG00000003341	PABPC4	74	95.413	ENSMAUG00000019763	-	84	95.413	Mesocricetus_auratus
ENSPCAG00000003341	PABPC4	69	74.038	ENSMAUG00000001295	-	97	74.038	Mesocricetus_auratus
ENSPCAG00000003341	PABPC4	99	68.074	ENSMICG00000036729	-	100	70.608	Microcebus_murinus
ENSPCAG00000003341	PABPC4	89	89.679	ENSMICG00000016633	-	100	89.679	Microcebus_murinus
ENSPCAG00000003341	PABPC4	99	93.415	ENSMOCG00000006763	Pabpc4	100	92.771	Microtus_ochrogaster
ENSPCAG00000003341	PABPC4	88	83.524	ENSMMOG00000002363	pabpc4	99	72.398	Mola_mola
ENSPCAG00000003341	PABPC4	56	68.079	ENSMODG00000018051	-	91	68.079	Monodelphis_domestica
ENSPCAG00000003341	PABPC4	98	84.414	ENSMODG00000017657	-	100	84.091	Monodelphis_domestica
ENSPCAG00000003341	PABPC4	99	73.867	ENSMALG00000011017	pabpc4	100	74.516	Monopterus_albus
ENSPCAG00000003341	PABPC4	99	78.644	MGP_CAROLIEiJ_G0024864	-	100	78.644	Mus_caroli
ENSPCAG00000003341	PABPC4	100	92.727	MGP_CAROLIEiJ_G0026435	-	100	99.291	Mus_caroli
ENSPCAG00000003341	PABPC4	100	93.333	ENSMUSG00000011257	Pabpc4	100	99.405	Mus_musculus
ENSPCAG00000003341	PABPC4	99	92.780	MGP_PahariEiJ_G0028765	Pabpc4	100	100.000	Mus_pahari
ENSPCAG00000003341	PABPC4	99	73.997	MGP_SPRETEiJ_G0027415	Pabpc4	100	99.291	Mus_spretus
ENSPCAG00000003341	PABPC4	100	94.697	ENSMPUG00000014414	-	100	94.697	Mustela_putorius_furo
ENSPCAG00000003341	PABPC4	95	48.657	ENSMPUG00000006836	-	100	48.499	Mustela_putorius_furo
ENSPCAG00000003341	PABPC4	100	87.576	ENSMLUG00000012068	PABPC4	100	87.576	Myotis_lucifugus
ENSPCAG00000003341	PABPC4	100	91.818	ENSNGAG00000018292	Pabpc4	100	91.818	Nannospalax_galili
ENSPCAG00000003341	PABPC4	64	68.362	ENSNBRG00000010047	-	75	68.362	Neolamprologus_brichardi
ENSPCAG00000003341	PABPC4	100	92.121	ENSNLEG00000011928	PABPC4	100	92.121	Nomascus_leucogenys
ENSPCAG00000003341	PABPC4	82	95.238	ENSOPRG00000011984	PABPC4	87	95.238	Ochotona_princeps
ENSPCAG00000003341	PABPC4	99	82.752	ENSODEG00000017434	-	94	92.793	Octodon_degus
ENSPCAG00000003341	PABPC4	100	93.636	ENSODEG00000006592	-	100	93.636	Octodon_degus
ENSPCAG00000003341	PABPC4	100	74.888	ENSONIG00000008176	pabpc4	100	75.187	Oreochromis_niloticus
ENSPCAG00000003341	PABPC4	99	82.549	ENSOANG00000010001	PABPC4	100	82.549	Ornithorhynchus_anatinus
ENSPCAG00000003341	PABPC4	96	94.146	ENSOCUG00000000562	PABPC4	88	94.146	Oryctolagus_cuniculus
ENSPCAG00000003341	PABPC4	99	90.068	ENSORLG00000017479	pabpc4	99	90.068	Oryzias_latipes
ENSPCAG00000003341	PABPC4	99	90.068	ENSORLG00020018644	pabpc4	99	90.068	Oryzias_latipes_hni
ENSPCAG00000003341	PABPC4	99	90.068	ENSORLG00015015042	pabpc4	99	90.068	Oryzias_latipes_hsok
ENSPCAG00000003341	PABPC4	99	74.545	ENSOMEG00000014410	pabpc4	99	79.661	Oryzias_melastigma
ENSPCAG00000003341	PABPC4	100	91.855	ENSOGAG00000004067	PABPC4	100	91.855	Otolemur_garnettii
ENSPCAG00000003341	PABPC4	100	94.545	ENSOARG00000020060	PABPC4	100	94.545	Ovis_aries
ENSPCAG00000003341	PABPC4	100	94.242	ENSPPAG00000043625	PABPC4	100	94.242	Pan_paniscus
ENSPCAG00000003341	PABPC4	100	94.697	ENSPPRG00000024727	PABPC4	100	94.697	Panthera_pardus
ENSPCAG00000003341	PABPC4	100	94.697	ENSPTIG00000005829	PABPC4	100	94.697	Panthera_tigris_altaica
ENSPCAG00000003341	PABPC4	100	94.242	ENSPTRG00000000573	PABPC4	100	94.242	Pan_troglodytes
ENSPCAG00000003341	PABPC4	100	94.545	ENSPANG00000009484	PABPC4	100	94.545	Papio_anubis
ENSPCAG00000003341	PABPC4	99	76.399	ENSPKIG00000025356	pabpc4	99	76.888	Paramormyrops_kingsleyae
ENSPCAG00000003341	PABPC4	99	83.156	ENSPSIG00000016892	PABPC4	100	83.156	Pelodiscus_sinensis
ENSPCAG00000003341	PABPC4	100	71.795	ENSPMGG00000009073	pabpc4	99	72.356	Periophthalmus_magnuspinnatus
ENSPCAG00000003341	PABPC4	100	86.212	ENSPEMG00000024193	-	99	86.212	Peromyscus_maniculatus_bairdii
ENSPCAG00000003341	PABPC4	100	92.273	ENSPEMG00000023569	-	99	92.273	Peromyscus_maniculatus_bairdii
ENSPCAG00000003341	PABPC4	89	66.172	ENSPMAG00000002836	pabpc4	100	66.502	Petromyzon_marinus
ENSPCAG00000003341	PABPC4	97	62.428	ENSPMAG00000007885	pabpc4	100	61.754	Petromyzon_marinus
ENSPCAG00000003341	PABPC4	97	86.396	ENSPCIG00000020674	PABPC4	100	87.500	Phascolarctos_cinereus
ENSPCAG00000003341	PABPC4	100	74.401	ENSPFOG00000002682	pabpc4	100	75.150	Poecilia_formosa
ENSPCAG00000003341	PABPC4	100	74.251	ENSPLAG00000010112	pabpc4	100	75.599	Poecilia_latipinna
ENSPCAG00000003341	PABPC4	99	74.772	ENSPMEG00000019739	pabpc4	100	75.299	Poecilia_mexicana
ENSPCAG00000003341	PABPC4	100	82.540	ENSPREG00000001589	pabpc4	100	75.599	Poecilia_reticulata
ENSPCAG00000003341	PABPC4	100	94.242	ENSPPYG00000001506	PABPC4	100	94.242	Pongo_abelii
ENSPCAG00000003341	PABPC4	100	93.646	ENSPCOG00000023725	-	100	93.797	Propithecus_coquereli
ENSPCAG00000003341	PABPC4	99	76.401	ENSPCOG00000025882	-	95	94.059	Propithecus_coquereli
ENSPCAG00000003341	PABPC4	99	93.950	ENSPVAG00000002187	PABPC4	100	93.950	Pteropus_vampyrus
ENSPCAG00000003341	PABPC4	100	74.738	ENSPNYG00000006134	pabpc4	100	75.336	Pundamilia_nyererei
ENSPCAG00000003341	PABPC4	100	75.150	ENSPNAG00000024355	pabpc4	100	75.299	Pygocentrus_nattereri
ENSPCAG00000003341	PABPC4	100	90.758	ENSRNOG00000015642	Pabpc4	100	90.758	Rattus_norvegicus
ENSPCAG00000003341	PABPC4	100	88.788	ENSRNOG00000028592	AABR07035074.1	100	88.788	Rattus_norvegicus
ENSPCAG00000003341	PABPC4	100	94.394	ENSRBIG00000039761	PABPC4	100	94.394	Rhinopithecus_bieti
ENSPCAG00000003341	PABPC4	100	94.394	ENSRROG00000033355	PABPC4	100	94.394	Rhinopithecus_roxellana
ENSPCAG00000003341	PABPC4	100	94.242	ENSSBOG00000026193	PABPC4	100	94.242	Saimiri_boliviensis_boliviensis
ENSPCAG00000003341	PABPC4	98	83.308	ENSSHAG00000018139	PABPC4	100	83.005	Sarcophilus_harrisii
ENSPCAG00000003341	PABPC4	99	77.116	ENSSFOG00015023514	pabpc4	99	77.031	Scleropages_formosus
ENSPCAG00000003341	PABPC4	99	74.169	ENSSMAG00000009007	pabpc4	99	74.320	Scophthalmus_maximus
ENSPCAG00000003341	PABPC4	99	74.394	ENSSDUG00000012683	pabpc4	95	84.348	Seriola_dumerili
ENSPCAG00000003341	PABPC4	99	74.394	ENSSLDG00000013025	pabpc4	97	84.348	Seriola_lalandi_dorsalis
ENSPCAG00000003341	PABPC4	100	87.121	ENSSARG00000000310	PABPC4	100	87.121	Sorex_araneus
ENSPCAG00000003341	PABPC4	99	82.701	ENSSPUG00000003204	PABPC4	100	82.549	Sphenodon_punctatus
ENSPCAG00000003341	PABPC4	99	75.038	ENSSPAG00000009252	pabpc4	99	83.184	Stegastes_partitus
ENSPCAG00000003341	PABPC4	100	94.545	ENSSSCG00000003660	-	100	94.545	Sus_scrofa
ENSPCAG00000003341	PABPC4	95	46.970	ENSSSCG00000036170	-	96	46.970	Sus_scrofa
ENSPCAG00000003341	PABPC4	99	83.056	ENSTGUG00000001266	PABPC4	100	83.056	Taeniopygia_guttata
ENSPCAG00000003341	PABPC4	100	73.952	ENSTRUG00000005907	pabpc4	99	74.474	Takifugu_rubripes
ENSPCAG00000003341	PABPC4	100	70.890	ENSTNIG00000016902	pabpc4	99	70.890	Tetraodon_nigroviridis
ENSPCAG00000003341	PABPC4	99	82.689	ENSTBEG00000009035	PABPC4	100	82.689	Tupaia_belangeri
ENSPCAG00000003341	PABPC4	99	77.395	ENSTTRG00000014340	PABPC4	100	81.849	Tursiops_truncatus
ENSPCAG00000003341	PABPC4	100	94.394	ENSUAMG00000000303	PABPC4	100	94.394	Ursus_americanus
ENSPCAG00000003341	PABPC4	100	94.394	ENSUMAG00000019585	PABPC4	99	99.057	Ursus_maritimus
ENSPCAG00000003341	PABPC4	84	100.000	ENSVPAG00000010041	PABPC4	77	100.000	Vicugna_pacos
ENSPCAG00000003341	PABPC4	100	94.545	ENSVVUG00000005215	PABPC4	100	94.545	Vulpes_vulpes
ENSPCAG00000003341	PABPC4	55	97.024	ENSXETG00000027221	-	100	97.024	Xenopus_tropicalis
ENSPCAG00000003341	PABPC4	99	74.659	ENSXETG00000010946	pabpc4	100	74.659	Xenopus_tropicalis
ENSPCAG00000003341	PABPC4	99	72.757	ENSXCOG00000013190	pabpc4	93	81.897	Xiphophorus_couchianus
ENSPCAG00000003341	PABPC4	100	74.551	ENSXMAG00000019007	pabpc4	100	75.449	Xiphophorus_maculatus