EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPCAG00000005638 (Gene tree)
Gene ID: -
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Procavia_capensis
Status: putative
Strand: Minus strand
Length: 97733 bases
Position: chrGeneScaffold_2101:7728-105460
Accession: 30654
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCAP00000005523	XRN_N	PF03159.18	1.5e-86	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCAT00000005915	XRN1-201	4596	-	ENSPCAP00000005523	1532 (aa)	-	UPI00018AF583

Gene Model

Click here to download ENSPCAG00000005638's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCAG00000005638's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCAG00000005638	XRN1	100	81.594	ENSG00000114127	XRN1	100	96.970	Homo_sapiens
ENSPCAG00000005638	XRN1	92	77.473	ENSAPOG00000000622	xrn1	93	75.641	Acanthochromis_polyacanthus
ENSPCAG00000005638	XRN1	96	81.920	ENSAMEG00000012538	XRN1	88	81.920	Ailuropoda_melanoleuca
ENSPCAG00000005638	XRN1	90	67.167	ENSACIG00000001057	xrn1	84	67.498	Amphilophus_citrinellus
ENSPCAG00000005638	XRN1	87	79.121	ENSAOCG00000014097	xrn1	95	69.215	Amphiprion_ocellaris
ENSPCAG00000005638	XRN1	92	79.121	ENSAPEG00000006620	xrn1	82	79.121	Amphiprion_percula
ENSPCAG00000005638	XRN1	86	76.642	ENSATEG00000009752	xrn1	83	75.365	Anabas_testudineus
ENSPCAG00000005638	XRN1	93	78.173	ENSAPLG00000004905	XRN1	84	78.173	Anas_platyrhynchos
ENSPCAG00000005638	XRN1	96	68.401	ENSACAG00000004985	XRN1	88	68.401	Anolis_carolinensis
ENSPCAG00000005638	XRN1	99	82.025	ENSANAG00000029013	XRN1	97	88.517	Aotus_nancymaae
ENSPCAG00000005638	XRN1	96	59.524	ENSACLG00000004806	xrn1	87	59.247	Astatotilapia_calliptera
ENSPCAG00000005638	XRN1	92	75.137	ENSAMXG00000019370	xrn1	95	71.247	Astyanax_mexicanus
ENSPCAG00000005638	XRN1	100	82.189	ENSBTAG00000011524	XRN1	90	82.189	Bos_taurus
ENSPCAG00000005638	XRN1	66	51.311	WBGene00012730	xrn-1	70	51.555	Caenorhabditis_elegans
ENSPCAG00000005638	XRN1	99	81.948	ENSCJAG00000001872	XRN1	90	83.997	Callithrix_jacchus
ENSPCAG00000005638	XRN1	99	81.611	ENSCAFG00000007783	XRN1	90	81.582	Canis_familiaris
ENSPCAG00000005638	XRN1	96	82.411	ENSCAFG00020009120	XRN1	92	91.143	Canis_lupus_dingo
ENSPCAG00000005638	XRN1	96	81.752	ENSCHIG00000019192	XRN1	88	81.752	Capra_hircus
ENSPCAG00000005638	XRN1	96	83.795	ENSTSYG00000002705	XRN1	87	83.795	Carlito_syrichta
ENSPCAG00000005638	XRN1	51	96.244	ENSCAPG00000004604	-	90	96.244	Cavia_aperea
ENSPCAG00000005638	XRN1	99	82.219	ENSCCAG00000034800	XRN1	92	95.238	Cebus_capucinus
ENSPCAG00000005638	XRN1	100	81.801	ENSCATG00000041794	XRN1	90	81.801	Cercocebus_atys
ENSPCAG00000005638	XRN1	96	79.908	ENSCLAG00000001451	XRN1	92	94.872	Chinchilla_lanigera
ENSPCAG00000005638	XRN1	100	81.930	ENSCSAG00000011265	XRN1	90	81.930	Chlorocebus_sabaeus
ENSPCAG00000005638	XRN1	70	59.633	ENSCSAVG00000008584	-	77	59.450	Ciona_savignyi
ENSPCAG00000005638	XRN1	100	81.983	ENSCANG00000037495	XRN1	92	95.238	Colobus_angolensis_palliatus
ENSPCAG00000005638	XRN1	96	79.974	ENSCGRG00001019411	Xrn1	92	94.322	Cricetulus_griseus_chok1gshd
ENSPCAG00000005638	XRN1	96	79.974	ENSCGRG00000012464	Xrn1	92	94.322	Cricetulus_griseus_crigri
ENSPCAG00000005638	XRN1	90	63.380	ENSCSEG00000021285	xrn1	95	76.858	Cynoglossus_semilaevis
ENSPCAG00000005638	XRN1	72	65.049	ENSCVAG00000013089	xrn1	97	68.773	Cyprinodon_variegatus
ENSPCAG00000005638	XRN1	92	81.752	ENSDARG00000091652	xrn1	98	79.281	Danio_rerio
ENSPCAG00000005638	XRN1	96	81.499	ENSDORG00000013833	Xrn1	88	81.499	Dipodomys_ordii
ENSPCAG00000005638	XRN1	67	53.945	FBgn0020261	pcm	61	53.578	Drosophila_melanogaster
ENSPCAG00000005638	XRN1	89	98.198	ENSETEG00000003978	XRN1	82	97.581	Echinops_telfairi
ENSPCAG00000005638	XRN1	100	81.282	ENSEASG00005002687	XRN1	90	97.368	Equus_asinus_asinus
ENSPCAG00000005638	XRN1	100	81.347	ENSECAG00000008301	XRN1	90	81.347	Equus_caballus
ENSPCAG00000005638	XRN1	87	86.861	ENSEEUG00000011323	XRN1	79	86.861	Erinaceus_europaeus
ENSPCAG00000005638	XRN1	96	61.012	ENSELUG00000000169	xrn1	87	61.210	Esox_lucius
ENSPCAG00000005638	XRN1	99	77.432	ENSFCAG00000027589	XRN1	93	93.953	Felis_catus
ENSPCAG00000005638	XRN1	93	75.591	ENSFALG00000007021	XRN1	83	75.846	Ficedula_albicollis
ENSPCAG00000005638	XRN1	96	80.435	ENSFDAG00000020494	XRN1	92	93.956	Fukomys_damarensis
ENSPCAG00000005638	XRN1	79	67.568	ENSGMOG00000006396	xrn1	71	67.568	Gadus_morhua
ENSPCAG00000005638	XRN1	93	76.318	ENSGALG00000002706	XRN1	83	76.318	Gallus_gallus
ENSPCAG00000005638	XRN1	92	65.874	ENSGACG00000014328	xrn1	78	77.495	Gasterosteus_aculeatus
ENSPCAG00000005638	XRN1	96	72.579	ENSGAGG00000017535	XRN1	92	72.579	Gopherus_agassizii
ENSPCAG00000005638	XRN1	100	81.736	ENSGGOG00000008047	XRN1	90	81.736	Gorilla_gorilla
ENSPCAG00000005638	XRN1	91	65.559	ENSHBUG00000005908	xrn1	95	73.319	Haplochromis_burtoni
ENSPCAG00000005638	XRN1	96	81.752	ENSHGLG00000014476	XRN1	92	94.872	Heterocephalus_glaber_female
ENSPCAG00000005638	XRN1	96	81.752	ENSHGLG00100015130	XRN1	92	94.872	Heterocephalus_glaber_male
ENSPCAG00000005638	XRN1	91	66.502	ENSHCOG00000014062	xrn1	86	66.584	Hippocampus_comes
ENSPCAG00000005638	XRN1	96	61.261	ENSIPUG00000015229	xrn1	88	62.316	Ictalurus_punctatus
ENSPCAG00000005638	XRN1	96	82.016	ENSSTOG00000013552	XRN1	92	95.055	Ictidomys_tridecemlineatus
ENSPCAG00000005638	XRN1	96	79.485	ENSJJAG00000010863	Xrn1	93	94.505	Jaculus_jaculus
ENSPCAG00000005638	XRN1	96	59.235	ENSKMAG00000021356	xrn1	93	75.745	Kryptolebias_marmoratus
ENSPCAG00000005638	XRN1	91	65.675	ENSLBEG00000018656	xrn1	91	78.038	Labrus_bergylta
ENSPCAG00000005638	XRN1	93	73.560	ENSLACG00000009020	XRN1	83	73.560	Latimeria_chalumnae
ENSPCAG00000005638	XRN1	92	71.012	ENSLOCG00000007944	xrn1	83	70.931	Lepisosteus_oculatus
ENSPCAG00000005638	XRN1	68	89.251	ENSLAFG00000015426	XRN1	98	89.251	Loxodonta_africana
ENSPCAG00000005638	XRN1	100	81.865	ENSMFAG00000032599	XRN1	90	81.865	Macaca_fascicularis
ENSPCAG00000005638	XRN1	100	81.865	ENSMMUG00000014038	XRN1	90	81.865	Macaca_mulatta
ENSPCAG00000005638	XRN1	100	81.801	ENSMNEG00000034217	XRN1	90	81.801	Macaca_nemestrina
ENSPCAG00000005638	XRN1	88	66.288	ENSMAMG00000013219	xrn1	92	77.754	Mastacembelus_armatus
ENSPCAG00000005638	XRN1	96	59.365	ENSMZEG00005015099	xrn1	87	59.247	Maylandia_zebra
ENSPCAG00000005638	XRN1	93	76.637	ENSMGAG00000006333	XRN1	84	76.637	Meleagris_gallopavo
ENSPCAG00000005638	XRN1	99	82.597	ENSMICG00000048948	XRN1	73	100.000	Microcebus_murinus
ENSPCAG00000005638	XRN1	58	93.590	ENSMOCG00000008665	Xrn1	92	93.590	Microtus_ochrogaster
ENSPCAG00000005638	XRN1	100	75.824	ENSMODG00000021236	XRN1	90	75.824	Monodelphis_domestica
ENSPCAG00000005638	XRN1	91	62.310	ENSMALG00000004098	xrn1	85	62.550	Monopterus_albus
ENSPCAG00000005638	XRN1	87	93.407	MGP_CAROLIEiJ_G0032535	Xrn1	100	95.000	Mus_caroli
ENSPCAG00000005638	XRN1	96	79.274	ENSMUSG00000032410	Xrn1	100	95.000	Mus_musculus
ENSPCAG00000005638	XRN1	96	79.208	MGP_PahariEiJ_G0015404	Xrn1	100	95.000	Mus_pahari
ENSPCAG00000005638	XRN1	96	79.340	MGP_SPRETEiJ_G0033678	Xrn1	100	95.000	Mus_spretus
ENSPCAG00000005638	XRN1	99	81.960	ENSMPUG00000012040	XRN1	90	81.930	Mustela_putorius_furo
ENSPCAG00000005638	XRN1	96	80.645	ENSMLUG00000016885	XRN1	88	80.645	Myotis_lucifugus
ENSPCAG00000005638	XRN1	58	89.927	ENSNGAG00000023964	Xrn1	92	89.927	Nannospalax_galili
ENSPCAG00000005638	XRN1	100	81.983	ENSNLEG00000004726	XRN1	90	81.983	Nomascus_leucogenys
ENSPCAG00000005638	XRN1	69	98.611	ENSMEUG00000014473	-	62	98.718	Notamacropus_eugenii
ENSPCAG00000005638	XRN1	63	86.759	ENSOPRG00000007337	-	57	86.759	Ochotona_princeps
ENSPCAG00000005638	XRN1	92	67.214	ENSONIG00000016673	xrn1	98	60.079	Oreochromis_niloticus
ENSPCAG00000005638	XRN1	85	79.111	ENSOANG00000006735	XRN1	91	71.012	Ornithorhynchus_anatinus
ENSPCAG00000005638	XRN1	99	79.658	ENSOCUG00000001861	XRN1	91	79.633	Oryctolagus_cuniculus
ENSPCAG00000005638	XRN1	91	67.707	ENSORLG00000013005	xrn1	86	68.036	Oryzias_latipes
ENSPCAG00000005638	XRN1	92	67.984	ENSORLG00020005559	xrn1	86	68.066	Oryzias_latipes_hni
ENSPCAG00000005638	XRN1	89	67.901	ENSORLG00015022523	xrn1	87	67.984	Oryzias_latipes_hsok
ENSPCAG00000005638	XRN1	91	66.048	ENSOMEG00000015397	xrn1	83	79.670	Oryzias_melastigma
ENSPCAG00000005638	XRN1	99	80.000	ENSOGAG00000000170	XRN1	90	79.974	Otolemur_garnettii
ENSPCAG00000005638	XRN1	100	82.383	ENSOARG00000006343	XRN1	91	82.383	Ovis_aries
ENSPCAG00000005638	XRN1	100	81.801	ENSPPAG00000010180	XRN1	91	81.801	Pan_paniscus
ENSPCAG00000005638	XRN1	96	84.413	ENSPPRG00000007125	XRN1	87	84.413	Panthera_pardus
ENSPCAG00000005638	XRN1	96	84.413	ENSPTIG00000021081	XRN1	87	84.413	Panthera_tigris_altaica
ENSPCAG00000005638	XRN1	100	81.801	ENSPTRG00000015482	XRN1	91	81.801	Pan_troglodytes
ENSPCAG00000005638	XRN1	100	81.801	ENSPANG00000010638	XRN1	90	81.801	Papio_anubis
ENSPCAG00000005638	XRN1	96	72.603	ENSPSIG00000018050	XRN1	88	72.603	Pelodiscus_sinensis
ENSPCAG00000005638	XRN1	57	78.623	ENSPMGG00000002648	xrn1	89	80.256	Periophthalmus_magnuspinnatus
ENSPCAG00000005638	XRN1	58	94.322	ENSPEMG00000020610	Xrn1	92	94.322	Peromyscus_maniculatus_bairdii
ENSPCAG00000005638	XRN1	68	54.860	ENSPMAG00000002975	xrn1	86	77.233	Petromyzon_marinus
ENSPCAG00000005638	XRN1	100	75.711	ENSPCIG00000028735	XRN1	92	90.842	Phascolarctos_cinereus
ENSPCAG00000005638	XRN1	92	78.584	ENSPFOG00000013932	xrn1	91	78.584	Poecilia_formosa
ENSPCAG00000005638	XRN1	96	60.225	ENSPLAG00000021653	xrn1	95	60.516	Poecilia_latipinna
ENSPCAG00000005638	XRN1	96	60.106	ENSPMEG00000003076	xrn1	93	60.396	Poecilia_mexicana
ENSPCAG00000005638	XRN1	96	60.066	ENSPREG00000021147	xrn1	88	59.574	Poecilia_reticulata
ENSPCAG00000005638	XRN1	100	81.724	ENSPPYG00000014172	XRN1	90	81.724	Pongo_abelii
ENSPCAG00000005638	XRN1	99	82.078	ENSPCOG00000013089	XRN1	97	89.060	Propithecus_coquereli
ENSPCAG00000005638	XRN1	94	84.629	ENSPVAG00000016265	XRN1	85	84.629	Pteropus_vampyrus
ENSPCAG00000005638	XRN1	91	66.532	ENSPNYG00000010570	xrn1	85	66.532	Pundamilia_nyererei
ENSPCAG00000005638	XRN1	92	65.072	ENSPNAG00000023531	xrn1	84	78.000	Pygocentrus_nattereri
ENSPCAG00000005638	XRN1	96	79.315	ENSRNOG00000042951	Xrn1	88	79.315	Rattus_norvegicus
ENSPCAG00000005638	XRN1	100	81.736	ENSRBIG00000041227	XRN1	91	81.736	Rhinopithecus_bieti
ENSPCAG00000005638	XRN1	66	42.357	YGL173C	XRN1	71	42.357	Saccharomyces_cerevisiae
ENSPCAG00000005638	XRN1	99	82.078	ENSSBOG00000029561	XRN1	90	82.048	Saimiri_boliviensis_boliviensis
ENSPCAG00000005638	XRN1	100	75.290	ENSSHAG00000016207	XRN1	92	75.290	Sarcophilus_harrisii
ENSPCAG00000005638	XRN1	90	67.201	ENSSFOG00015024211	xrn1	88	61.361	Scleropages_formosus
ENSPCAG00000005638	XRN1	88	80.328	ENSSMAG00000016534	xrn1	82	80.328	Scophthalmus_maximus
ENSPCAG00000005638	XRN1	84	67.056	ENSSDUG00000010306	xrn1	82	67.223	Seriola_dumerili
ENSPCAG00000005638	XRN1	91	66.721	ENSSLDG00000021543	xrn1	87	66.884	Seriola_lalandi_dorsalis
ENSPCAG00000005638	XRN1	74	79.214	ENSSARG00000007741	-	83	79.214	Sorex_araneus
ENSPCAG00000005638	XRN1	93	77.832	ENSTGUG00000008498	XRN1	83	78.092	Taeniopygia_guttata
ENSPCAG00000005638	XRN1	92	78.755	ENSTRUG00000004895	xrn1	96	77.137	Takifugu_rubripes
ENSPCAG00000005638	XRN1	92	78.611	ENSTNIG00000017615	xrn1	84	78.611	Tetraodon_nigroviridis
ENSPCAG00000005638	XRN1	75	95.954	ENSTBEG00000003256	XRN1	75	94.737	Tupaia_belangeri
ENSPCAG00000005638	XRN1	95	82.455	ENSTTRG00000012914	XRN1	86	82.455	Tursiops_truncatus
ENSPCAG00000005638	XRN1	83	97.368	ENSUAMG00000001608	XRN1	92	97.368	Ursus_americanus
ENSPCAG00000005638	XRN1	99	82.414	ENSUMAG00000013625	XRN1	90	82.383	Ursus_maritimus
ENSPCAG00000005638	XRN1	99	79.104	ENSVPAG00000004690	XRN1	90	79.080	Vicugna_pacos
ENSPCAG00000005638	XRN1	99	82.414	ENSVVUG00000024461	XRN1	96	97.368	Vulpes_vulpes
ENSPCAG00000005638	XRN1	96	67.790	ENSXETG00000000619	xrn1	90	87.320	Xenopus_tropicalis
ENSPCAG00000005638	XRN1	96	60.308	ENSXCOG00000007917	xrn1	86	60.468	Xiphophorus_couchianus
ENSPCAG00000005638	XRN1	87	67.224	ENSXMAG00000018320	xrn1	83	67.475	Xiphophorus_maculatus