EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPCAG00000008412 (Gene tree)
Gene ID: -
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Procavia_capensis
Status: putative
Strand: Minus strand
Length: 29050 bases
Position: chrGeneScaffold_4967:36800-65849
Accession: 24644
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCAP00000007897	EST1	PF10374.9	4.6e-24	1	1
ENSPCAP00000007897	EST1_DNA_bind	PF10373.9	4.5e-19	1	2
ENSPCAP00000007897	EST1_DNA_bind	PF10373.9	4.5e-19	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCAT00000008451	SMG5-201	2823	-	ENSPCAP00000007897	941 (aa)	-	UPI00018AEEAB

Gene Model

Click here to download ENSPCAG00000008412's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCAG00000008412's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCAG00000008412	SMG5	88	85.654	ENSG00000198952	SMG5	75	97.790	Homo_sapiens
ENSPCAG00000008412	SMG5	81	80.556	ENSAPOG00000019690	smg5	75	80.556	Acanthochromis_polyacanthus
ENSPCAG00000008412	SMG5	75	98.324	ENSAMEG00000014458	SMG5	77	98.324	Ailuropoda_melanoleuca
ENSPCAG00000008412	SMG5	81	80.000	ENSACIG00000001353	smg5	75	80.000	Amphilophus_citrinellus
ENSPCAG00000008412	SMG5	75	88.268	ENSAOCG00000019483	smg5	77	80.556	Amphiprion_ocellaris
ENSPCAG00000008412	SMG5	75	88.268	ENSAPEG00000022949	smg5	77	80.556	Amphiprion_percula
ENSPCAG00000008412	SMG5	81	80.556	ENSATEG00000005348	smg5	77	80.556	Anabas_testudineus
ENSPCAG00000008412	SMG5	75	97.207	ENSAPLG00000010263	SMG5	72	97.207	Anas_platyrhynchos
ENSPCAG00000008412	SMG5	81	97.238	ENSANAG00000032899	SMG5	75	97.238	Aotus_nancymaae
ENSPCAG00000008412	SMG5	81	79.444	ENSACLG00000009311	smg5	74	79.444	Astatotilapia_calliptera
ENSPCAG00000008412	SMG5	51	81.111	ENSAMXG00000024616	smg5	77	81.111	Astyanax_mexicanus
ENSPCAG00000008412	SMG5	75	58.564	ENSBTAG00000021747	-	69	58.564	Bos_taurus
ENSPCAG00000008412	SMG5	88	85.654	ENSBTAG00000009435	SMG5	81	85.654	Bos_taurus
ENSPCAG00000008412	SMG5	81	95.580	ENSCJAG00000005684	SMG5	78	95.580	Callithrix_jacchus
ENSPCAG00000008412	SMG5	81	94.475	ENSCAFG00000016839	SMG5	75	94.475	Canis_familiaris
ENSPCAG00000008412	SMG5	81	94.475	ENSCAFG00020006061	SMG5	75	94.475	Canis_lupus_dingo
ENSPCAG00000008412	SMG5	88	85.654	ENSCHIG00000007709	SMG5	81	85.654	Capra_hircus
ENSPCAG00000008412	SMG5	75	58.011	ENSCHIG00000006323	-	70	58.011	Capra_hircus
ENSPCAG00000008412	SMG5	81	97.790	ENSTSYG00000004099	SMG5	75	97.790	Carlito_syrichta
ENSPCAG00000008412	SMG5	70	97.452	ENSCAPG00000003631	SMG5	72	97.452	Cavia_aperea
ENSPCAG00000008412	SMG5	81	97.238	ENSCPOG00000015696	SMG5	75	97.238	Cavia_porcellus
ENSPCAG00000008412	SMG5	81	97.238	ENSCCAG00000027409	SMG5	75	97.238	Cebus_capucinus
ENSPCAG00000008412	SMG5	81	97.790	ENSCATG00000030539	SMG5	75	97.790	Cercocebus_atys
ENSPCAG00000008412	SMG5	81	97.790	ENSCLAG00000003983	SMG5	75	97.790	Chinchilla_lanigera
ENSPCAG00000008412	SMG5	81	97.790	ENSCSAG00000002120	SMG5	75	97.790	Chlorocebus_sabaeus
ENSPCAG00000008412	SMG5	74	97.076	ENSCPBG00000025848	SMG5	75	97.076	Chrysemys_picta_bellii
ENSPCAG00000008412	SMG5	79	44.503	ENSCING00000008706	-	77	44.503	Ciona_intestinalis
ENSPCAG00000008412	SMG5	76	97.656	ENSCANG00000029208	SMG5	72	97.656	Colobus_angolensis_palliatus
ENSPCAG00000008412	SMG5	81	95.580	ENSCGRG00001006336	Smg5	75	95.580	Cricetulus_griseus_chok1gshd
ENSPCAG00000008412	SMG5	75	99.441	ENSCGRG00000005111	Smg5	71	99.441	Cricetulus_griseus_crigri
ENSPCAG00000008412	SMG5	81	78.889	ENSCSEG00000014220	smg5	77	78.889	Cynoglossus_semilaevis
ENSPCAG00000008412	SMG5	81	80.000	ENSCVAG00000000529	smg5	81	58.547	Cyprinodon_variegatus
ENSPCAG00000008412	SMG5	81	96.133	ENSDNOG00000000051	SMG5	75	96.133	Dasypus_novemcinctus
ENSPCAG00000008412	SMG5	73	45.763	ENSDNOG00000039862	-	75	45.763	Dasypus_novemcinctus
ENSPCAG00000008412	SMG5	81	97.238	ENSDORG00000010382	Smg5	81	85.232	Dipodomys_ordii
ENSPCAG00000008412	SMG5	73	95.146	ENSETEG00000010336	SMG5	75	95.146	Echinops_telfairi
ENSPCAG00000008412	SMG5	72	66.292	ENSEBUG00000003739	smg5	75	66.292	Eptatretus_burgeri
ENSPCAG00000008412	SMG5	81	97.238	ENSEASG00005019122	SMG5	75	97.238	Equus_asinus_asinus
ENSPCAG00000008412	SMG5	81	97.238	ENSECAG00000001389	SMG5	75	97.238	Equus_caballus
ENSPCAG00000008412	SMG5	81	78.453	ENSELUG00000012585	smg5	77	78.453	Esox_lucius
ENSPCAG00000008412	SMG5	88	84.810	ENSFCAG00000011783	SMG5	75	94.475	Felis_catus
ENSPCAG00000008412	SMG5	75	98.883	ENSFDAG00000017388	SMG5	71	98.883	Fukomys_damarensis
ENSPCAG00000008412	SMG5	69	88.268	ENSFHEG00000013939	smg5	66	88.268	Fundulus_heteroclitus
ENSPCAG00000008412	SMG5	81	81.111	ENSGMOG00000007310	smg5	69	81.111	Gadus_morhua
ENSPCAG00000008412	SMG5	75	96.089	ENSGALG00000029918	-	71	96.089	Gallus_gallus
ENSPCAG00000008412	SMG5	54	78.333	ENSGAFG00000021691	smg5	72	78.333	Gambusia_affinis
ENSPCAG00000008412	SMG5	81	86.188	ENSGAGG00000016131	SMG5	76	86.188	Gopherus_agassizii
ENSPCAG00000008412	SMG5	81	97.790	ENSGGOG00000010932	SMG5	75	97.790	Gorilla_gorilla
ENSPCAG00000008412	SMG5	81	79.444	ENSHBUG00000008654	smg5	74	79.444	Haplochromis_burtoni
ENSPCAG00000008412	SMG5	81	95.580	ENSHGLG00000019152	SMG5	75	95.580	Heterocephalus_glaber_female
ENSPCAG00000008412	SMG5	78	96.795	ENSHGLG00100015948	SMG5	80	96.795	Heterocephalus_glaber_male
ENSPCAG00000008412	SMG5	55	78.889	ENSHCOG00000010229	smg5	52	78.889	Hippocampus_comes
ENSPCAG00000008412	SMG5	80	78.889	ENSIPUG00000006624	Smg5	76	78.889	Ictalurus_punctatus
ENSPCAG00000008412	SMG5	81	97.238	ENSSTOG00000001780	SMG5	75	97.238	Ictidomys_tridecemlineatus
ENSPCAG00000008412	SMG5	81	93.370	ENSJJAG00000022763	Smg5	75	93.370	Jaculus_jaculus
ENSPCAG00000008412	SMG5	71	74.786	ENSKMAG00000014586	smg5	82	74.786	Kryptolebias_marmoratus
ENSPCAG00000008412	SMG5	81	80.556	ENSLBEG00000002145	smg5	77	80.556	Labrus_bergylta
ENSPCAG00000008412	SMG5	88	74.370	ENSLACG00000010521	SMG5	82	74.370	Latimeria_chalumnae
ENSPCAG00000008412	SMG5	77	77.465	ENSLOCG00000008380	smg5	71	77.941	Lepisosteus_oculatus
ENSPCAG00000008412	SMG5	81	97.238	ENSLAFG00000006241	SMG5	75	97.238	Loxodonta_africana
ENSPCAG00000008412	SMG5	88	85.654	ENSMFAG00000045357	SMG5	75	97.790	Macaca_fascicularis
ENSPCAG00000008412	SMG5	81	97.790	ENSMMUG00000000090	SMG5	75	97.790	Macaca_mulatta
ENSPCAG00000008412	SMG5	88	85.654	ENSMNEG00000044425	SMG5	75	97.790	Macaca_nemestrina
ENSPCAG00000008412	SMG5	81	97.790	ENSMLEG00000041192	SMG5	75	97.790	Mandrillus_leucophaeus
ENSPCAG00000008412	SMG5	53	79.444	ENSMZEG00005016543	smg5	79	79.444	Maylandia_zebra
ENSPCAG00000008412	SMG5	81	75.556	ENSMZEG00005015815	smg5	75	75.556	Maylandia_zebra
ENSPCAG00000008412	SMG5	81	95.028	ENSMAUG00000010381	Smg5	75	95.028	Mesocricetus_auratus
ENSPCAG00000008412	SMG5	88	85.232	ENSMICG00000002257	SMG5	75	96.685	Microcebus_murinus
ENSPCAG00000008412	SMG5	81	95.028	ENSMOCG00000016590	Smg5	75	95.028	Microtus_ochrogaster
ENSPCAG00000008412	SMG5	79	77.778	ENSMMOG00000017199	smg5	77	77.778	Mola_mola
ENSPCAG00000008412	SMG5	75	92.063	ENSMODG00000016901	SMG5	79	92.063	Monodelphis_domestica
ENSPCAG00000008412	SMG5	74	40.000	ENSMODG00000004511	-	70	40.000	Monodelphis_domestica
ENSPCAG00000008412	SMG5	81	78.333	ENSMALG00000010375	smg5	70	78.333	Monopterus_albus
ENSPCAG00000008412	SMG5	81	95.580	MGP_CAROLIEiJ_G0025163	Smg5	100	98.324	Mus_caroli
ENSPCAG00000008412	SMG5	81	96.133	ENSMUSG00000001415	Smg5	99	98.324	Mus_musculus
ENSPCAG00000008412	SMG5	81	95.028	MGP_PahariEiJ_G0026606	Smg5	100	98.324	Mus_pahari
ENSPCAG00000008412	SMG5	81	95.580	MGP_SPRETEiJ_G0026104	Smg5	100	98.324	Mus_spretus
ENSPCAG00000008412	SMG5	74	97.076	ENSMPUG00000004546	SMG5	74	97.076	Mustela_putorius_furo
ENSPCAG00000008412	SMG5	81	95.580	ENSMLUG00000008518	SMG5	75	95.580	Myotis_lucifugus
ENSPCAG00000008412	SMG5	75	58.333	ENSNGAG00000012101	-	69	58.333	Nannospalax_galili
ENSPCAG00000008412	SMG5	81	93.370	ENSNGAG00000020706	Smg5	75	93.370	Nannospalax_galili
ENSPCAG00000008412	SMG5	81	79.444	ENSNBRG00000004332	smg5	77	79.444	Neolamprologus_brichardi
ENSPCAG00000008412	SMG5	81	97.790	ENSNLEG00000012439	SMG5	75	97.790	Nomascus_leucogenys
ENSPCAG00000008412	SMG5	81	85.635	ENSMEUG00000012834	SMG5	75	85.635	Notamacropus_eugenii
ENSPCAG00000008412	SMG5	81	92.818	ENSOPRG00000009152	SMG5	75	92.818	Ochotona_princeps
ENSPCAG00000008412	SMG5	81	96.685	ENSODEG00000012237	SMG5	75	96.685	Octodon_degus
ENSPCAG00000008412	SMG5	81	99.441	ENSOCUG00000012886	SMG5	71	99.441	Oryctolagus_cuniculus
ENSPCAG00000008412	SMG5	73	54.494	ENSOCUG00000023338	-	74	54.494	Oryctolagus_cuniculus
ENSPCAG00000008412	SMG5	87	74.359	ENSORLG00000016239	smg5	76	79.444	Oryzias_latipes
ENSPCAG00000008412	SMG5	81	79.444	ENSORLG00020013127	smg5	76	79.444	Oryzias_latipes_hni
ENSPCAG00000008412	SMG5	81	79.444	ENSORLG00015019014	smg5	76	79.444	Oryzias_latipes_hsok
ENSPCAG00000008412	SMG5	76	74.359	ENSOMEG00000021330	smg5	82	74.359	Oryzias_melastigma
ENSPCAG00000008412	SMG5	81	95.580	ENSOGAG00000004966	SMG5	75	95.580	Otolemur_garnettii
ENSPCAG00000008412	SMG5	75	58.242	ENSOARG00000011963	-	69	58.242	Ovis_aries
ENSPCAG00000008412	SMG5	88	85.654	ENSOARG00000005778	SMG5	81	85.654	Ovis_aries
ENSPCAG00000008412	SMG5	88	85.654	ENSPPAG00000011996	SMG5	75	97.238	Pan_paniscus
ENSPCAG00000008412	SMG5	81	98.883	ENSPPRG00000011901	SMG5	71	98.883	Panthera_pardus
ENSPCAG00000008412	SMG5	81	93.855	ENSPTIG00000007892	SMG5	76	93.855	Panthera_tigris_altaica
ENSPCAG00000008412	SMG5	81	99.441	ENSPTRG00000049282	-	75	97.790	Pan_troglodytes
ENSPCAG00000008412	SMG5	88	85.654	ENSPTRG00000023925	SMG5	75	97.790	Pan_troglodytes
ENSPCAG00000008412	SMG5	88	85.654	ENSPANG00000011201	SMG5	75	97.790	Papio_anubis
ENSPCAG00000008412	SMG5	81	76.667	ENSPKIG00000009402	smg5	74	76.667	Paramormyrops_kingsleyae
ENSPCAG00000008412	SMG5	75	97.207	ENSPSIG00000015198	SMG5	71	97.207	Pelodiscus_sinensis
ENSPCAG00000008412	SMG5	78	81.111	ENSPMGG00000010465	smg5	75	81.111	Periophthalmus_magnuspinnatus
ENSPCAG00000008412	SMG5	81	95.580	ENSPEMG00000001819	Smg5	75	95.580	Peromyscus_maniculatus_bairdii
ENSPCAG00000008412	SMG5	79	61.261	ENSPMAG00000000410	smg5	75	59.657	Petromyzon_marinus
ENSPCAG00000008412	SMG5	81	92.818	ENSPCIG00000018938	SMG5	75	92.818	Phascolarctos_cinereus
ENSPCAG00000008412	SMG5	74	78.889	ENSPFOG00000010191	smg5	77	78.889	Poecilia_formosa
ENSPCAG00000008412	SMG5	74	78.889	ENSPLAG00000009332	smg5	82	74.359	Poecilia_latipinna
ENSPCAG00000008412	SMG5	87	74.359	ENSPMEG00000014105	smg5	82	74.359	Poecilia_mexicana
ENSPCAG00000008412	SMG5	65	78.333	ENSPREG00000017713	smg5	85	74.359	Poecilia_reticulata
ENSPCAG00000008412	SMG5	88	85.654	ENSPPYG00000000723	SMG5	75	97.238	Pongo_abelii
ENSPCAG00000008412	SMG5	81	96.685	ENSPCOG00000004741	SMG5	75	96.685	Propithecus_coquereli
ENSPCAG00000008412	SMG5	81	94.475	ENSPVAG00000016748	SMG5	75	94.475	Pteropus_vampyrus
ENSPCAG00000008412	SMG5	81	79.444	ENSPNYG00000013397	smg5	80	79.444	Pundamilia_nyererei
ENSPCAG00000008412	SMG5	87	74.786	ENSPNAG00000028363	smg5	82	74.786	Pygocentrus_nattereri
ENSPCAG00000008412	SMG5	81	96.133	ENSRNOG00000019590	Smg5	75	96.133	Rattus_norvegicus
ENSPCAG00000008412	SMG5	81	97.790	ENSRBIG00000027428	SMG5	75	97.790	Rhinopithecus_bieti
ENSPCAG00000008412	SMG5	81	97.238	ENSRROG00000030035	SMG5	75	97.238	Rhinopithecus_roxellana
ENSPCAG00000008412	SMG5	81	96.133	ENSSBOG00000033339	SMG5	75	96.133	Saimiri_boliviensis_boliviensis
ENSPCAG00000008412	SMG5	75	98.883	ENSSHAG00000014163	SMG5	71	98.883	Sarcophilus_harrisii
ENSPCAG00000008412	SMG5	81	80.000	ENSSFOG00015024175	smg5	77	80.000	Scleropages_formosus
ENSPCAG00000008412	SMG5	81	79.444	ENSSMAG00000013059	smg5	77	79.444	Scophthalmus_maximus
ENSPCAG00000008412	SMG5	81	80.556	ENSSDUG00000007122	smg5	63	80.556	Seriola_dumerili
ENSPCAG00000008412	SMG5	81	80.556	ENSSLDG00000011418	smg5	73	80.556	Seriola_lalandi_dorsalis
ENSPCAG00000008412	SMG5	76	94.231	ENSSARG00000012484	SMG5	78	94.231	Sorex_araneus
ENSPCAG00000008412	SMG5	74	96.491	ENSSPUG00000002260	SMG5	81	96.491	Sphenodon_punctatus
ENSPCAG00000008412	SMG5	75	88.827	ENSSPAG00000014266	smg5	77	80.556	Stegastes_partitus
ENSPCAG00000008412	SMG5	81	96.685	ENSSSCG00000006490	-	74	99.415	Sus_scrofa
ENSPCAG00000008412	SMG5	87	68.936	ENSSSCG00000039308	-	73	78.212	Sus_scrofa
ENSPCAG00000008412	SMG5	80	86.188	ENSTGUG00000003748	-	76	86.188	Taeniopygia_guttata
ENSPCAG00000008412	SMG5	81	79.444	ENSTRUG00000012580	smg5	75	79.444	Takifugu_rubripes
ENSPCAG00000008412	SMG5	81	78.889	ENSTNIG00000010303	smg5	75	78.889	Tetraodon_nigroviridis
ENSPCAG00000008412	SMG5	88	99.156	ENSTTRG00000001401	SMG5	75	99.156	Tursiops_truncatus
ENSPCAG00000008412	SMG5	81	94.475	ENSUAMG00000013721	SMG5	81	83.966	Ursus_americanus
ENSPCAG00000008412	SMG5	70	97.656	ENSUMAG00000018041	SMG5	67	96.899	Ursus_maritimus
ENSPCAG00000008412	SMG5	65	98.551	ENSVPAG00000009446	SMG5	62	98.551	Vicugna_pacos
ENSPCAG00000008412	SMG5	81	94.475	ENSVVUG00000005887	SMG5	75	94.475	Vulpes_vulpes
ENSPCAG00000008412	SMG5	56	75.676	ENSXETG00000033791	SMG5	68	75.676	Xenopus_tropicalis
ENSPCAG00000008412	SMG5	81	78.333	ENSXMAG00000013499	smg5	82	74.359	Xiphophorus_maculatus