EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPCAG00000008427 (Gene tree)
Gene ID: -
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Procavia_capensis
Status: putative
Strand: Plus strand
Length: 19210 bases
Position: chrGeneScaffold_5440:53250-72459
Accession: 16060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCAP00000007869	TruB_N	PF01509.18	5.1e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCAT00000008419	TRUB1-201	1059	-	ENSPCAP00000007869	352 (aa)	-	UPI00018AF5EF

Gene Model

Click here to download ENSPCAG00000008427's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCAG00000008427's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCAG00000008427	TRUB1	100	75.852	ENSG00000165832	TRUB1	100	75.284	Homo_sapiens
ENSPCAG00000008427	TRUB1	70	62.041	ENSAPOG00000020565	trub1	93	60.784	Acanthochromis_polyacanthus
ENSPCAG00000008427	TRUB1	96	75.000	ENSAMEG00000014931	TRUB1	99	75.989	Ailuropoda_melanoleuca
ENSPCAG00000008427	TRUB1	71	56.000	ENSACIG00000003060	trub1	83	56.000	Amphilophus_citrinellus
ENSPCAG00000008427	TRUB1	70	62.041	ENSAOCG00000017188	trub1	91	61.200	Amphiprion_ocellaris
ENSPCAG00000008427	TRUB1	71	60.800	ENSAPEG00000015209	trub1	95	59.387	Amphiprion_percula
ENSPCAG00000008427	TRUB1	68	63.071	ENSATEG00000023291	trub1	86	63.071	Anabas_testudineus
ENSPCAG00000008427	TRUB1	79	65.591	ENSAPLG00000006808	TRUB1	100	65.591	Anas_platyrhynchos
ENSPCAG00000008427	TRUB1	76	63.433	ENSACAG00000009282	TRUB1	97	63.433	Anolis_carolinensis
ENSPCAG00000008427	TRUB1	100	75.354	ENSANAG00000022870	TRUB1	100	75.637	Aotus_nancymaae
ENSPCAG00000008427	TRUB1	74	60.385	ENSACLG00000000823	trub1	91	61.111	Astatotilapia_calliptera
ENSPCAG00000008427	TRUB1	77	58.519	ENSAMXG00000015845	trub1	90	58.519	Astyanax_mexicanus
ENSPCAG00000008427	TRUB1	85	78.667	ENSBTAG00000012955	TRUB1	99	75.071	Bos_taurus
ENSPCAG00000008427	TRUB1	100	75.637	ENSCJAG00000047815	TRUB1	100	75.921	Callithrix_jacchus
ENSPCAG00000008427	TRUB1	99	76.136	ENSCAFG00000011688	TRUB1	99	76.705	Canis_familiaris
ENSPCAG00000008427	TRUB1	99	76.136	ENSCAFG00020013237	TRUB1	99	76.705	Canis_lupus_dingo
ENSPCAG00000008427	TRUB1	85	78.667	ENSCHIG00000020884	TRUB1	99	74.432	Capra_hircus
ENSPCAG00000008427	TRUB1	100	74.011	ENSTSYG00000000446	TRUB1	100	73.729	Carlito_syrichta
ENSPCAG00000008427	TRUB1	72	74.803	ENSCAPG00000017088	TRUB1	100	74.803	Cavia_aperea
ENSPCAG00000008427	TRUB1	70	75.600	ENSCPOG00000040236	-	100	77.016	Cavia_porcellus
ENSPCAG00000008427	TRUB1	70	72.581	ENSCPOG00000030129	-	85	72.177	Cavia_porcellus
ENSPCAG00000008427	TRUB1	100	75.921	ENSCCAG00000028842	TRUB1	100	76.204	Cebus_capucinus
ENSPCAG00000008427	TRUB1	100	76.204	ENSCATG00000033431	TRUB1	100	75.921	Cercocebus_atys
ENSPCAG00000008427	TRUB1	70	78.629	ENSCLAG00000008664	TRUB1	100	79.032	Chinchilla_lanigera
ENSPCAG00000008427	TRUB1	100	76.487	ENSCSAG00000004891	TRUB1	100	76.204	Chlorocebus_sabaeus
ENSPCAG00000008427	TRUB1	99	62.931	ENSCHOG00000011931	TRUB1	99	64.080	Choloepus_hoffmanni
ENSPCAG00000008427	TRUB1	81	67.361	ENSCPBG00000003051	TRUB1	97	68.551	Chrysemys_picta_bellii
ENSPCAG00000008427	TRUB1	100	76.487	ENSCANG00000029445	TRUB1	100	76.204	Colobus_angolensis_palliatus
ENSPCAG00000008427	TRUB1	72	75.197	ENSCGRG00001016772	-	85	75.000	Cricetulus_griseus_chok1gshd
ENSPCAG00000008427	TRUB1	79	68.571	ENSCGRG00001010322	-	79	67.918	Cricetulus_griseus_chok1gshd
ENSPCAG00000008427	TRUB1	79	77.500	ENSCGRG00000010806	Trub1	90	76.792	Cricetulus_griseus_crigri
ENSPCAG00000008427	TRUB1	69	58.607	ENSCSEG00000011261	trub1	94	53.793	Cynoglossus_semilaevis
ENSPCAG00000008427	TRUB1	72	61.265	ENSCVAG00000008791	trub1	78	61.265	Cyprinodon_variegatus
ENSPCAG00000008427	TRUB1	74	60.618	ENSDARG00000053805	trub1	92	58.955	Danio_rerio
ENSPCAG00000008427	TRUB1	99	72.727	ENSDNOG00000001069	TRUB1	99	73.011	Dasypus_novemcinctus
ENSPCAG00000008427	TRUB1	99	72.159	ENSDORG00000010431	Trub1	99	72.443	Dipodomys_ordii
ENSPCAG00000008427	TRUB1	81	86.765	ENSETEG00000009183	TRUB1	81	87.255	Echinops_telfairi
ENSPCAG00000008427	TRUB1	96	74.556	ENSEASG00005014739	TRUB1	99	76.136	Equus_asinus_asinus
ENSPCAG00000008427	TRUB1	96	74.556	ENSECAG00000007177	TRUB1	99	76.136	Equus_caballus
ENSPCAG00000008427	TRUB1	99	61.732	ENSEEUG00000013993	TRUB1	100	61.281	Erinaceus_europaeus
ENSPCAG00000008427	TRUB1	73	61.089	ENSELUG00000000502	trub1	90	61.089	Esox_lucius
ENSPCAG00000008427	TRUB1	85	79.264	ENSFCAG00000031927	TRUB1	99	74.929	Felis_catus
ENSPCAG00000008427	TRUB1	68	65.833	ENSFALG00000002232	TRUB1	92	65.833	Ficedula_albicollis
ENSPCAG00000008427	TRUB1	69	79.835	ENSFDAG00000008140	TRUB1	99	79.835	Fukomys_damarensis
ENSPCAG00000008427	TRUB1	70	61.224	ENSFHEG00000004016	trub1	84	61.224	Fundulus_heteroclitus
ENSPCAG00000008427	TRUB1	79	63.799	ENSGALG00000009091	TRUB1	98	63.799	Gallus_gallus
ENSPCAG00000008427	TRUB1	69	58.607	ENSGAFG00000009193	trub1	86	57.787	Gambusia_affinis
ENSPCAG00000008427	TRUB1	55	61.026	ENSGACG00000015387	trub1	96	61.026	Gasterosteus_aculeatus
ENSPCAG00000008427	TRUB1	88	64.952	ENSGAGG00000009758	TRUB1	81	69.123	Gopherus_agassizii
ENSPCAG00000008427	TRUB1	100	76.420	ENSGGOG00000004583	TRUB1	100	75.852	Gorilla_gorilla
ENSPCAG00000008427	TRUB1	72	61.111	ENSHBUG00000016787	trub1	91	61.111	Haplochromis_burtoni
ENSPCAG00000008427	TRUB1	99	70.170	ENSHGLG00000015314	TRUB1	99	70.170	Heterocephalus_glaber_female
ENSPCAG00000008427	TRUB1	70	77.016	ENSHGLG00100009183	TRUB1	100	77.016	Heterocephalus_glaber_male
ENSPCAG00000008427	TRUB1	70	61.633	ENSHCOG00000017877	trub1	89	61.633	Hippocampus_comes
ENSPCAG00000008427	TRUB1	76	59.480	ENSIPUG00000017559	trub1	95	59.480	Ictalurus_punctatus
ENSPCAG00000008427	TRUB1	89	75.949	ENSSTOG00000003641	TRUB1	99	72.159	Ictidomys_tridecemlineatus
ENSPCAG00000008427	TRUB1	85	78.595	ENSJJAG00000011800	Trub1	88	78.595	Jaculus_jaculus
ENSPCAG00000008427	TRUB1	70	61.382	ENSKMAG00000006232	trub1	88	61.382	Kryptolebias_marmoratus
ENSPCAG00000008427	TRUB1	74	59.328	ENSLBEG00000026722	trub1	94	59.108	Labrus_bergylta
ENSPCAG00000008427	TRUB1	81	63.860	ENSLACG00000014885	TRUB1	95	63.860	Latimeria_chalumnae
ENSPCAG00000008427	TRUB1	74	64.885	ENSLOCG00000012979	trub1	89	64.885	Lepisosteus_oculatus
ENSPCAG00000008427	TRUB1	100	83.889	ENSLAFG00000015452	TRUB1	100	84.444	Loxodonta_africana
ENSPCAG00000008427	TRUB1	100	76.771	ENSMFAG00000031767	TRUB1	100	76.487	Macaca_fascicularis
ENSPCAG00000008427	TRUB1	100	76.487	ENSMMUG00000001902	TRUB1	100	76.204	Macaca_mulatta
ENSPCAG00000008427	TRUB1	100	72.805	ENSMNEG00000044646	TRUB1	100	72.521	Macaca_nemestrina
ENSPCAG00000008427	TRUB1	100	76.487	ENSMLEG00000042655	TRUB1	100	76.204	Mandrillus_leucophaeus
ENSPCAG00000008427	TRUB1	74	60.769	ENSMZEG00005024095	trub1	91	61.508	Maylandia_zebra
ENSPCAG00000008427	TRUB1	76	65.056	ENSMGAG00000011135	TRUB1	92	65.056	Meleagris_gallopavo
ENSPCAG00000008427	TRUB1	79	75.000	ENSMAUG00000011101	Trub1	89	74.000	Mesocricetus_auratus
ENSPCAG00000008427	TRUB1	99	75.568	ENSMICG00000016324	TRUB1	99	75.284	Microcebus_murinus
ENSPCAG00000008427	TRUB1	79	77.500	ENSMOCG00000017759	Trub1	91	76.000	Microtus_ochrogaster
ENSPCAG00000008427	TRUB1	81	74.476	ENSMODG00000009676	TRUB1	81	73.649	Monodelphis_domestica
ENSPCAG00000008427	TRUB1	80	75.352	MGP_CAROLIEiJ_G0023100	Trub1	79	86.224	Mus_caroli
ENSPCAG00000008427	TRUB1	80	74.296	ENSMUSG00000025086	Trub1	79	85.204	Mus_musculus
ENSPCAG00000008427	TRUB1	85	73.754	MGP_PahariEiJ_G0014588	Trub1	89	74.000	Mus_pahari
ENSPCAG00000008427	TRUB1	80	74.648	MGP_SPRETEiJ_G0024021	Trub1	79	85.204	Mus_spretus
ENSPCAG00000008427	TRUB1	85	79.667	ENSMPUG00000003556	TRUB1	99	76.705	Mustela_putorius_furo
ENSPCAG00000008427	TRUB1	95	72.107	ENSMLUG00000017686	TRUB1	100	71.388	Myotis_lucifugus
ENSPCAG00000008427	TRUB1	99	72.159	ENSNGAG00000018682	Trub1	99	72.159	Nannospalax_galili
ENSPCAG00000008427	TRUB1	70	61.789	ENSNBRG00000023393	trub1	88	61.789	Neolamprologus_brichardi
ENSPCAG00000008427	TRUB1	96	76.331	ENSNLEG00000016345	TRUB1	100	75.852	Nomascus_leucogenys
ENSPCAG00000008427	TRUB1	52	88.462	ENSMEUG00000006603	TRUB1	71	86.458	Notamacropus_eugenii
ENSPCAG00000008427	TRUB1	85	73.754	ENSOPRG00000009371	TRUB1	87	74.000	Ochotona_princeps
ENSPCAG00000008427	TRUB1	99	69.602	ENSODEG00000010854	TRUB1	99	69.886	Octodon_degus
ENSPCAG00000008427	TRUB1	74	60.385	ENSONIG00000007249	trub1	94	60.385	Oreochromis_niloticus
ENSPCAG00000008427	TRUB1	78	70.909	ENSOANG00000001556	TRUB1	93	69.258	Ornithorhynchus_anatinus
ENSPCAG00000008427	TRUB1	85	74.000	ENSOCUG00000009456	TRUB1	87	74.000	Oryctolagus_cuniculus
ENSPCAG00000008427	TRUB1	69	62.810	ENSORLG00000029719	trub1	92	60.853	Oryzias_latipes
ENSPCAG00000008427	TRUB1	68	62.656	ENSORLG00020016767	trub1	91	60.465	Oryzias_latipes_hni
ENSPCAG00000008427	TRUB1	69	62.397	ENSORLG00015014728	trub1	92	60.465	Oryzias_latipes_hsok
ENSPCAG00000008427	TRUB1	74	60.618	ENSOMEG00000014556	trub1	91	60.465	Oryzias_melastigma
ENSPCAG00000008427	TRUB1	99	74.148	ENSOGAG00000015895	TRUB1	99	75.284	Otolemur_garnettii
ENSPCAG00000008427	TRUB1	83	76.667	ENSOARG00000015591	TRUB1	99	72.423	Ovis_aries
ENSPCAG00000008427	TRUB1	100	76.136	ENSPPAG00000043645	TRUB1	100	75.568	Pan_paniscus
ENSPCAG00000008427	TRUB1	95	74.777	ENSPPRG00000007096	TRUB1	99	76.353	Panthera_pardus
ENSPCAG00000008427	TRUB1	95	75.074	ENSPTIG00000006378	TRUB1	99	76.638	Panthera_tigris_altaica
ENSPCAG00000008427	TRUB1	100	76.136	ENSPTRG00000002964	TRUB1	100	75.568	Pan_troglodytes
ENSPCAG00000008427	TRUB1	100	76.204	ENSPANG00000020712	TRUB1	100	75.921	Papio_anubis
ENSPCAG00000008427	TRUB1	77	67.279	ENSPSIG00000012877	TRUB1	93	67.279	Pelodiscus_sinensis
ENSPCAG00000008427	TRUB1	72	58.661	ENSPMGG00000000075	trub1	91	58.661	Periophthalmus_magnuspinnatus
ENSPCAG00000008427	TRUB1	85	75.333	ENSPEMG00000011156	Trub1	88	75.333	Peromyscus_maniculatus_bairdii
ENSPCAG00000008427	TRUB1	81	74.126	ENSPCIG00000009729	TRUB1	80	73.311	Phascolarctos_cinereus
ENSPCAG00000008427	TRUB1	72	59.921	ENSPFOG00000009950	trub1	91	59.921	Poecilia_formosa
ENSPCAG00000008427	TRUB1	72	59.921	ENSPLAG00000013855	trub1	93	57.836	Poecilia_latipinna
ENSPCAG00000008427	TRUB1	72	59.921	ENSPMEG00000009064	trub1	90	59.921	Poecilia_mexicana
ENSPCAG00000008427	TRUB1	74	59.023	ENSPREG00000003343	trub1	95	59.023	Poecilia_reticulata
ENSPCAG00000008427	TRUB1	96	76.331	ENSPPYG00000002676	TRUB1	100	75.568	Pongo_abelii
ENSPCAG00000008427	TRUB1	99	71.023	ENSPCOG00000024360	TRUB1	99	70.170	Propithecus_coquereli
ENSPCAG00000008427	TRUB1	70	83.065	ENSPVAG00000007575	TRUB1	93	83.468	Pteropus_vampyrus
ENSPCAG00000008427	TRUB1	74	60.385	ENSPNYG00000018614	trub1	91	61.111	Pundamilia_nyererei
ENSPCAG00000008427	TRUB1	74	52.290	ENSPNAG00000006881	trub1	85	51.908	Pygocentrus_nattereri
ENSPCAG00000008427	TRUB1	99	69.602	ENSRNOG00000017321	Trub1	88	75.333	Rattus_norvegicus
ENSPCAG00000008427	TRUB1	100	66.106	ENSRBIG00000033423	TRUB1	100	65.826	Rhinopithecus_bieti
ENSPCAG00000008427	TRUB1	100	75.921	ENSRROG00000033902	TRUB1	100	75.637	Rhinopithecus_roxellana
ENSPCAG00000008427	TRUB1	100	75.354	ENSSBOG00000024237	TRUB1	100	75.637	Saimiri_boliviensis_boliviensis
ENSPCAG00000008427	TRUB1	72	71.875	ENSSHAG00000009346	TRUB1	86	71.875	Sarcophilus_harrisii
ENSPCAG00000008427	TRUB1	69	62.140	ENSSFOG00015022124	trub1	83	62.140	Scleropages_formosus
ENSPCAG00000008427	TRUB1	74	59.924	ENSSMAG00000001020	trub1	92	59.924	Scophthalmus_maximus
ENSPCAG00000008427	TRUB1	68	62.500	ENSSDUG00000016414	trub1	90	62.000	Seriola_dumerili
ENSPCAG00000008427	TRUB1	68	62.917	ENSSLDG00000015486	trub1	90	62.400	Seriola_lalandi_dorsalis
ENSPCAG00000008427	TRUB1	77	70.221	ENSSPUG00000001642	TRUB1	93	70.221	Sphenodon_punctatus
ENSPCAG00000008427	TRUB1	74	61.390	ENSSPAG00000001217	trub1	92	61.390	Stegastes_partitus
ENSPCAG00000008427	TRUB1	99	72.443	ENSSSCG00000010653	TRUB1	97	75.150	Sus_scrofa
ENSPCAG00000008427	TRUB1	76	67.778	ENSTGUG00000010971	TRUB1	97	67.647	Taeniopygia_guttata
ENSPCAG00000008427	TRUB1	72	61.660	ENSTBEG00000002880	TRUB1	99	61.660	Tupaia_belangeri
ENSPCAG00000008427	TRUB1	66	83.761	ENSTTRG00000005767	TRUB1	93	83.468	Tursiops_truncatus
ENSPCAG00000008427	TRUB1	96	76.331	ENSUAMG00000024876	TRUB1	99	76.989	Ursus_americanus
ENSPCAG00000008427	TRUB1	83	80.205	ENSUMAG00000002411	TRUB1	99	74.716	Ursus_maritimus
ENSPCAG00000008427	TRUB1	99	76.136	ENSVPAG00000005507	TRUB1	99	76.420	Vicugna_pacos
ENSPCAG00000008427	TRUB1	99	75.852	ENSVVUG00000010085	TRUB1	83	76.989	Vulpes_vulpes
ENSPCAG00000008427	TRUB1	78	58.696	ENSXETG00000023828	trub1	99	58.484	Xenopus_tropicalis
ENSPCAG00000008427	TRUB1	69	59.259	ENSXCOG00000017847	trub1	86	59.259	Xiphophorus_couchianus
ENSPCAG00000008427	TRUB1	72	59.127	ENSXMAG00000014701	trub1	90	59.127	Xiphophorus_maculatus