EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPCAG00000008513 (Gene tree)
Gene ID: -
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Procavia_capensis
Status: putative
Strand: Minus strand
Length: 2957 bases
Position: chrscaffold_85473:3064-6020
Accession: 17259
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCAP00000007916	LSM	PF01423.22	1.2e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCAT00000008472	LSM4-201	375	-	ENSPCAP00000007916	124 (aa)	-	UPI0000E40CF4

Gene Model

Click here to download ENSPCAG00000008513's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCAG00000008513's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPCAG00000008513	LSM4	67	35.632	ENSPCAG00000013737	LSM2	66	36.923

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCAG00000008513	LSM4	100	98.387	ENSG00000130520	LSM4	99	98.387	Homo_sapiens
ENSPCAG00000008513	LSM4	100	98.387	ENSAMEG00000011162	LSM4	85	98.387	Ailuropoda_melanoleuca
ENSPCAG00000008513	LSM4	100	98.387	ENSANAG00000034659	LSM4	99	98.387	Aotus_nancymaae
ENSPCAG00000008513	LSM4	77	80.734	ENSACLG00000022738	lsm4	50	97.260	Astatotilapia_calliptera
ENSPCAG00000008513	LSM4	98	78.049	ENSAMXG00000016932	lsm4	86	81.967	Astyanax_mexicanus
ENSPCAG00000008513	LSM4	100	98.387	ENSBTAG00000008578	LSM4	89	98.387	Bos_taurus
ENSPCAG00000008513	LSM4	55	72.059	WBGene00003078	lsm-4	55	72.059	Caenorhabditis_elegans
ENSPCAG00000008513	LSM4	100	98.387	ENSCJAG00000014171	LSM4	99	98.387	Callithrix_jacchus
ENSPCAG00000008513	LSM4	99	98.374	ENSCAFG00000014900	LSM4	80	98.374	Canis_familiaris
ENSPCAG00000008513	LSM4	100	98.387	ENSCAFG00020012137	LSM4	89	98.387	Canis_lupus_dingo
ENSPCAG00000008513	LSM4	100	98.387	ENSCHIG00000010928	LSM4	82	98.387	Capra_hircus
ENSPCAG00000008513	LSM4	100	97.581	ENSTSYG00000030906	LSM4	99	97.581	Carlito_syrichta
ENSPCAG00000008513	LSM4	100	95.968	ENSCAPG00000014140	LSM4	89	95.968	Cavia_aperea
ENSPCAG00000008513	LSM4	100	95.968	ENSCPOG00000024117	LSM4	89	95.968	Cavia_porcellus
ENSPCAG00000008513	LSM4	100	98.387	ENSCCAG00000036308	LSM4	99	98.387	Cebus_capucinus
ENSPCAG00000008513	LSM4	100	98.387	ENSCATG00000029311	LSM4	99	98.387	Cercocebus_atys
ENSPCAG00000008513	LSM4	100	94.355	ENSCLAG00000010828	LSM4	89	94.355	Chinchilla_lanigera
ENSPCAG00000008513	LSM4	100	98.387	ENSCSAG00000005370	LSM4	89	98.387	Chlorocebus_sabaeus
ENSPCAG00000008513	LSM4	100	79.839	ENSCPBG00000012925	LSM4	89	77.419	Chrysemys_picta_bellii
ENSPCAG00000008513	LSM4	57	90.141	ENSCING00000007519	-	57	90.411	Ciona_intestinalis
ENSPCAG00000008513	LSM4	57	91.549	ENSCSAVG00000008596	-	58	91.781	Ciona_savignyi
ENSPCAG00000008513	LSM4	100	98.387	ENSCANG00000043686	LSM4	99	98.387	Colobus_angolensis_palliatus
ENSPCAG00000008513	LSM4	100	94.355	ENSCGRG00001014436	Lsm4	89	94.355	Cricetulus_griseus_chok1gshd
ENSPCAG00000008513	LSM4	100	94.355	ENSCGRG00000009398	Lsm4	90	94.355	Cricetulus_griseus_crigri
ENSPCAG00000008513	LSM4	66	93.902	ENSCSEG00000016127	lsm4	86	74.590	Cynoglossus_semilaevis
ENSPCAG00000008513	LSM4	98	74.400	ENSCVAG00000010601	lsm4	51	95.890	Cyprinodon_variegatus
ENSPCAG00000008513	LSM4	98	74.400	ENSCVAG00000021828	lsm4	56	95.890	Cyprinodon_variegatus
ENSPCAG00000008513	LSM4	97	76.190	ENSDARG00000023852	lsm4	57	97.260	Danio_rerio
ENSPCAG00000008513	LSM4	100	95.968	ENSDORG00000024225	Lsm4	89	95.968	Dipodomys_ordii
ENSPCAG00000008513	LSM4	100	100.000	ENSETEG00000007762	-	100	100.000	Echinops_telfairi
ENSPCAG00000008513	LSM4	100	98.387	ENSECAG00000010141	LSM4	51	98.387	Equus_caballus
ENSPCAG00000008513	LSM4	95	82.500	ENSELUG00000012821	lsm4	89	80.508	Esox_lucius
ENSPCAG00000008513	LSM4	100	98.387	ENSFCAG00000040580	LSM4	99	98.387	Felis_catus
ENSPCAG00000008513	LSM4	100	79.032	ENSFALG00000009478	LSM4	89	76.613	Ficedula_albicollis
ENSPCAG00000008513	LSM4	100	95.161	ENSFDAG00000010124	LSM4	90	95.161	Fukomys_damarensis
ENSPCAG00000008513	LSM4	66	95.122	ENSGMOG00000007729	lsm4	50	97.260	Gadus_morhua
ENSPCAG00000008513	LSM4	100	79.032	ENSGALG00000003385	LSM4	89	76.613	Gallus_gallus
ENSPCAG00000008513	LSM4	77	79.817	ENSGAFG00000004903	lsm4	55	93.151	Gambusia_affinis
ENSPCAG00000008513	LSM4	100	79.839	ENSGAGG00000017812	LSM4	89	77.419	Gopherus_agassizii
ENSPCAG00000008513	LSM4	100	98.387	ENSGGOG00000012914	-	99	98.387	Gorilla_gorilla
ENSPCAG00000008513	LSM4	100	95.161	ENSHGLG00000006568	LSM4	89	95.161	Heterocephalus_glaber_female
ENSPCAG00000008513	LSM4	63	98.718	ENSHGLG00100007894	LSM4	84	98.718	Heterocephalus_glaber_male
ENSPCAG00000008513	LSM4	98	73.770	ENSHCOG00000008819	lsm4	51	97.260	Hippocampus_comes
ENSPCAG00000008513	LSM4	98	77.236	ENSIPUG00000005368	Lsm4	51	97.260	Ictalurus_punctatus
ENSPCAG00000008513	LSM4	100	98.387	ENSSTOG00000016494	LSM4	89	98.387	Ictidomys_tridecemlineatus
ENSPCAG00000008513	LSM4	100	95.161	ENSJJAG00000017420	Lsm4	89	95.161	Jaculus_jaculus
ENSPCAG00000008513	LSM4	57	98.592	ENSKMAG00000005073	lsm4	51	98.630	Kryptolebias_marmoratus
ENSPCAG00000008513	LSM4	98	81.148	ENSLACG00000015861	LSM4	87	81.148	Latimeria_chalumnae
ENSPCAG00000008513	LSM4	92	81.579	ENSLOCG00000002025	lsm4	52	95.890	Lepisosteus_oculatus
ENSPCAG00000008513	LSM4	100	100.000	ENSLAFG00000017459	LSM4	89	100.000	Loxodonta_africana
ENSPCAG00000008513	LSM4	100	98.387	ENSMFAG00000031194	LSM4	99	98.387	Macaca_fascicularis
ENSPCAG00000008513	LSM4	100	98.387	ENSMMUG00000004405	LSM4	99	98.387	Macaca_mulatta
ENSPCAG00000008513	LSM4	100	98.387	ENSMNEG00000042899	LSM4	99	98.387	Macaca_nemestrina
ENSPCAG00000008513	LSM4	100	98.387	ENSMLEG00000027948	LSM4	99	98.387	Mandrillus_leucophaeus
ENSPCAG00000008513	LSM4	98	77.236	ENSMAMG00000006190	lsm4	86	74.590	Mastacembelus_armatus
ENSPCAG00000008513	LSM4	77	80.734	ENSMZEG00005016420	lsm4	50	97.260	Maylandia_zebra
ENSPCAG00000008513	LSM4	100	80.800	ENSMGAG00000004976	LSM4	89	88.710	Meleagris_gallopavo
ENSPCAG00000008513	LSM4	100	97.581	ENSMICG00000000222	LSM4	99	97.581	Microcebus_murinus
ENSPCAG00000008513	LSM4	100	94.355	ENSMOCG00000020861	Lsm4	89	94.355	Microtus_ochrogaster
ENSPCAG00000008513	LSM4	100	95.968	ENSMODG00000015044	-	100	95.968	Monodelphis_domestica
ENSPCAG00000008513	LSM4	98	76.000	ENSMALG00000018159	lsm4	51	98.630	Monopterus_albus
ENSPCAG00000008513	LSM4	100	94.355	MGP_CAROLIEiJ_G0031158	Lsm4	89	94.355	Mus_caroli
ENSPCAG00000008513	LSM4	100	94.355	ENSMUSG00000031848	Lsm4	89	94.355	Mus_musculus
ENSPCAG00000008513	LSM4	100	94.355	MGP_PahariEiJ_G0021623	Lsm4	89	94.355	Mus_pahari
ENSPCAG00000008513	LSM4	100	94.355	MGP_SPRETEiJ_G0032276	Lsm4	89	94.355	Mus_spretus
ENSPCAG00000008513	LSM4	100	98.387	ENSMPUG00000015589	LSM4	89	98.387	Mustela_putorius_furo
ENSPCAG00000008513	LSM4	100	98.387	ENSMLUG00000004010	LSM4	89	98.387	Myotis_lucifugus
ENSPCAG00000008513	LSM4	100	94.355	ENSNGAG00000008644	Lsm4	93	94.355	Nannospalax_galili
ENSPCAG00000008513	LSM4	100	92.742	ENSMEUG00000013229	LSM4	100	92.742	Notamacropus_eugenii
ENSPCAG00000008513	LSM4	100	91.935	ENSOPRG00000005575	LSM4	100	81.452	Ochotona_princeps
ENSPCAG00000008513	LSM4	100	95.161	ENSODEG00000020549	-	89	95.161	Octodon_degus
ENSPCAG00000008513	LSM4	100	69.355	ENSODEG00000011712	-	86	69.355	Octodon_degus
ENSPCAG00000008513	LSM4	100	85.484	ENSODEG00000004519	-	89	71.774	Octodon_degus
ENSPCAG00000008513	LSM4	77	80.734	ENSONIG00000012724	lsm4	50	97.260	Oreochromis_niloticus
ENSPCAG00000008513	LSM4	59	97.260	ENSOANG00000007434	LSM4	63	97.260	Ornithorhynchus_anatinus
ENSPCAG00000008513	LSM4	100	83.065	ENSORLG00000008391	lsm4	51	98.630	Oryzias_latipes
ENSPCAG00000008513	LSM4	100	83.065	ENSORLG00020014829	lsm4	51	98.630	Oryzias_latipes_hni
ENSPCAG00000008513	LSM4	100	83.065	ENSORLG00015010205	lsm4	51	98.630	Oryzias_latipes_hsok
ENSPCAG00000008513	LSM4	100	80.645	ENSOMEG00000003606	lsm4	51	95.890	Oryzias_melastigma
ENSPCAG00000008513	LSM4	69	97.647	ENSOGAG00000027992	LSM4	50	98.630	Otolemur_garnettii
ENSPCAG00000008513	LSM4	95	98.305	ENSOARG00000012553	LSM4	93	98.305	Ovis_aries
ENSPCAG00000008513	LSM4	100	98.387	ENSPPAG00000044045	-	99	98.387	Pan_paniscus
ENSPCAG00000008513	LSM4	100	98.387	ENSPPRG00000018264	LSM4	99	98.387	Panthera_pardus
ENSPCAG00000008513	LSM4	100	98.387	ENSPTIG00000006306	LSM4	90	98.387	Panthera_tigris_altaica
ENSPCAG00000008513	LSM4	100	98.387	ENSPTRG00000031470	LSM4	99	98.387	Pan_troglodytes
ENSPCAG00000008513	LSM4	100	98.387	ENSPANG00000014399	LSM4	99	98.387	Papio_anubis
ENSPCAG00000008513	LSM4	98	79.508	ENSPKIG00000006154	lsm4	57	97.260	Paramormyrops_kingsleyae
ENSPCAG00000008513	LSM4	100	79.032	ENSPSIG00000012358	LSM4	90	76.613	Pelodiscus_sinensis
ENSPCAG00000008513	LSM4	100	94.355	ENSPEMG00000001358	Lsm4	89	94.355	Peromyscus_maniculatus_bairdii
ENSPCAG00000008513	LSM4	98	77.600	ENSPLAG00000016267	lsm4	51	97.260	Poecilia_latipinna
ENSPCAG00000008513	LSM4	98	76.000	ENSPMEG00000016378	lsm4	53	97.260	Poecilia_mexicana
ENSPCAG00000008513	LSM4	100	98.387	ENSPPYG00000009736	LSM4	89	98.387	Pongo_abelii
ENSPCAG00000008513	LSM4	100	97.581	ENSPCOG00000019837	LSM4	99	97.581	Propithecus_coquereli
ENSPCAG00000008513	LSM4	100	98.387	ENSPVAG00000015383	LSM4	89	98.387	Pteropus_vampyrus
ENSPCAG00000008513	LSM4	77	80.734	ENSPNYG00000016794	lsm4	50	97.260	Pundamilia_nyererei
ENSPCAG00000008513	LSM4	96	81.667	ENSPNAG00000016598	lsm4	54	97.260	Pygocentrus_nattereri
ENSPCAG00000008513	LSM4	100	94.355	ENSRNOG00000019572	Lsm4	89	94.355	Rattus_norvegicus
ENSPCAG00000008513	LSM4	100	98.387	ENSRBIG00000024717	LSM4	99	98.387	Rhinopithecus_bieti
ENSPCAG00000008513	LSM4	100	98.387	ENSRROG00000045706	LSM4	99	98.387	Rhinopithecus_roxellana
ENSPCAG00000008513	LSM4	100	98.387	ENSSBOG00000022455	LSM4	99	98.387	Saimiri_boliviensis_boliviensis
ENSPCAG00000008513	LSM4	100	95.968	ENSSHAG00000011559	LSM4	89	95.968	Sarcophilus_harrisii
ENSPCAG00000008513	LSM4	98	77.869	ENSSFOG00015021067	lsm4	52	97.260	Scleropages_formosus
ENSPCAG00000008513	LSM4	100	98.387	ENSSSCG00000034314	LSM4	89	98.387	Sus_scrofa
ENSPCAG00000008513	LSM4	98	80.800	ENSTRUG00000021737	lsm4	51	94.521	Takifugu_rubripes
ENSPCAG00000008513	LSM4	98	78.400	ENSTNIG00000010191	lsm4	51	95.890	Tetraodon_nigroviridis
ENSPCAG00000008513	LSM4	100	98.387	ENSUAMG00000000665	LSM4	89	98.387	Ursus_americanus
ENSPCAG00000008513	LSM4	100	98.387	ENSUMAG00000009013	LSM4	89	98.387	Ursus_maritimus
ENSPCAG00000008513	LSM4	100	98.387	ENSVVUG00000008136	LSM4	64	98.387	Vulpes_vulpes
ENSPCAG00000008513	LSM4	100	90.323	ENSXETG00000024933	lsm4	89	75.000	Xenopus_tropicalis