EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPCAG00000008733 (Gene tree)
Gene ID: -
Gene Symbol: APOBEC1
Alias: APOBEC-1|BEDP|CDAR1|HEPR
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Procavia_capensis
Status: putative
Strand: Minus strand
Length: 8127 bases
Position: chrGeneScaffold_1910:4804-12930
Accession: 604
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCAP00000008128	APOBEC_N	PF08210.11	6.2e-30	1	1
ENSPCAP00000008128	APOBEC_C	PF05240.14	1.5e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCAT00000008696	APOBEC1-201	561	-	ENSPCAP00000008128	187 (aa)	-	UPI00018ADB51

Gene Model

Click here to download ENSPCAG00000008733's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCAG00000008733's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPCAG00000008733	APOBEC1	75	33.571	ENSPCAG00000015655	-	79	33.571
ENSPCAG00000008733	APOBEC1	60	36.283	ENSPCAG00000001848	-	81	36.283
ENSPCAG00000008733	APOBEC1	74	38.384	ENSPCAG00000015518	-	51	38.384

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCAG00000008733	APOBEC1	100	79.679	ENSG00000111701	APOBEC1	79	79.679	Homo_sapiens
ENSPCAG00000008733	APOBEC1	100	74.332	ENSAMEG00000007098	APOBEC1	79	74.332	Ailuropoda_melanoleuca
ENSPCAG00000008733	APOBEC1	91	39.181	ENSACAG00000028578	-	93	39.181	Anolis_carolinensis
ENSPCAG00000008733	APOBEC1	100	81.283	ENSANAG00000027743	APOBEC1	75	81.283	Aotus_nancymaae
ENSPCAG00000008733	APOBEC1	100	71.123	ENSBTAG00000014683	APOBEC1	79	71.123	Bos_taurus
ENSPCAG00000008733	APOBEC1	92	79.070	ENSCJAG00000005398	APOBEC1	78	79.070	Callithrix_jacchus
ENSPCAG00000008733	APOBEC1	100	78.075	ENSCAFG00000013901	APOBEC1	79	78.075	Canis_familiaris
ENSPCAG00000008733	APOBEC1	95	77.401	ENSCAFG00020003511	APOBEC1	74	77.401	Canis_lupus_dingo
ENSPCAG00000008733	APOBEC1	99	70.968	ENSCHIG00000011898	APOBEC1	77	70.968	Capra_hircus
ENSPCAG00000008733	APOBEC1	75	78.723	ENSTSYG00000029141	APOBEC1	100	78.723	Carlito_syrichta
ENSPCAG00000008733	APOBEC1	92	68.605	ENSCAPG00000015882	-	80	68.605	Cavia_aperea
ENSPCAG00000008733	APOBEC1	100	68.449	ENSCPOG00000033068	APOBEC1	79	68.449	Cavia_porcellus
ENSPCAG00000008733	APOBEC1	100	80.749	ENSCCAG00000022258	APOBEC1	79	80.749	Cebus_capucinus
ENSPCAG00000008733	APOBEC1	100	81.283	ENSCATG00000021613	APOBEC1	75	81.283	Cercocebus_atys
ENSPCAG00000008733	APOBEC1	100	69.519	ENSCLAG00000014645	APOBEC1	81	69.519	Chinchilla_lanigera
ENSPCAG00000008733	APOBEC1	75	80.851	ENSCSAG00000009817	APOBEC1	74	80.851	Chlorocebus_sabaeus
ENSPCAG00000008733	APOBEC1	97	43.850	ENSCPBG00000017398	-	82	43.850	Chrysemys_picta_bellii
ENSPCAG00000008733	APOBEC1	97	36.957	ENSCPBG00000014327	-	72	36.957	Chrysemys_picta_bellii
ENSPCAG00000008733	APOBEC1	86	48.765	ENSCPBG00000014328	-	71	48.765	Chrysemys_picta_bellii
ENSPCAG00000008733	APOBEC1	99	47.594	ENSCPBG00000014335	-	76	47.594	Chrysemys_picta_bellii
ENSPCAG00000008733	APOBEC1	98	44.920	ENSCPBG00000014331	-	78	45.652	Chrysemys_picta_bellii
ENSPCAG00000008733	APOBEC1	97	79.558	ENSCANG00000038359	APOBEC1	79	79.558	Colobus_angolensis_palliatus
ENSPCAG00000008733	APOBEC1	100	68.449	ENSCGRG00001011130	Apobec1	82	68.449	Cricetulus_griseus_chok1gshd
ENSPCAG00000008733	APOBEC1	100	68.449	ENSCGRG00000008644	Apobec1	82	68.449	Cricetulus_griseus_crigri
ENSPCAG00000008733	APOBEC1	100	82.353	ENSDNOG00000010926	APOBEC1	79	82.353	Dasypus_novemcinctus
ENSPCAG00000008733	APOBEC1	91	68.023	ENSDORG00000023717	Apobec1	80	68.023	Dipodomys_ordii
ENSPCAG00000008733	APOBEC1	100	78.723	ENSETEG00000004867	APOBEC1	80	78.723	Echinops_telfairi
ENSPCAG00000008733	APOBEC1	100	80.749	ENSEASG00005015951	APOBEC1	79	80.749	Equus_asinus_asinus
ENSPCAG00000008733	APOBEC1	75	82.979	ENSECAG00000017163	APOBEC1	74	82.979	Equus_caballus
ENSPCAG00000008733	APOBEC1	71	66.667	ENSEEUG00000007530	-	63	66.667	Erinaceus_europaeus
ENSPCAG00000008733	APOBEC1	93	67.630	ENSEEUG00000009112	-	77	67.630	Erinaceus_europaeus
ENSPCAG00000008733	APOBEC1	100	77.540	ENSFCAG00000009350	APOBEC1	79	77.540	Felis_catus
ENSPCAG00000008733	APOBEC1	75	47.887	ENSFALG00000007257	-	70	47.887	Ficedula_albicollis
ENSPCAG00000008733	APOBEC1	85	56.604	ENSFDAG00000018470	APOBEC1	76	56.604	Fukomys_damarensis
ENSPCAG00000008733	APOBEC1	86	47.826	ENSGAGG00000006624	-	58	47.826	Gopherus_agassizii
ENSPCAG00000008733	APOBEC1	99	48.663	ENSGAGG00000011837	-	86	52.500	Gopherus_agassizii
ENSPCAG00000008733	APOBEC1	86	44.720	ENSGAGG00000021744	-	63	44.720	Gopherus_agassizii
ENSPCAG00000008733	APOBEC1	96	39.344	ENSGAGG00000021745	-	68	39.344	Gopherus_agassizii
ENSPCAG00000008733	APOBEC1	86	50.000	ENSGAGG00000004947	-	80	50.000	Gopherus_agassizii
ENSPCAG00000008733	APOBEC1	100	60.963	ENSHGLG00000001495	APOBEC1	79	60.963	Heterocephalus_glaber_female
ENSPCAG00000008733	APOBEC1	100	59.893	ENSHGLG00100002187	APOBEC1	79	59.893	Heterocephalus_glaber_male
ENSPCAG00000008733	APOBEC1	74	75.540	ENSSTOG00000021971	APOBEC1	100	78.571	Ictidomys_tridecemlineatus
ENSPCAG00000008733	APOBEC1	100	71.123	ENSJJAG00000022108	Apobec1	82	71.123	Jaculus_jaculus
ENSPCAG00000008733	APOBEC1	93	87.931	ENSLAFG00000030837	APOBEC1	78	87.931	Loxodonta_africana
ENSPCAG00000008733	APOBEC1	100	81.283	ENSMFAG00000000277	APOBEC1	79	81.283	Macaca_fascicularis
ENSPCAG00000008733	APOBEC1	100	81.283	ENSMNEG00000029670	APOBEC1	79	81.283	Macaca_nemestrina
ENSPCAG00000008733	APOBEC1	100	81.283	ENSMLEG00000036301	APOBEC1	79	81.283	Mandrillus_leucophaeus
ENSPCAG00000008733	APOBEC1	93	68.391	ENSMAUG00000022167	Apobec1	78	68.391	Mesocricetus_auratus
ENSPCAG00000008733	APOBEC1	100	77.005	ENSMICG00000043645	APOBEC1	79	77.005	Microcebus_murinus
ENSPCAG00000008733	APOBEC1	60	70.536	ENSMOCG00000016170	-	99	70.536	Microtus_ochrogaster
ENSPCAG00000008733	APOBEC1	100	66.310	ENSMODG00000018004	APOBEC1	79	66.310	Monodelphis_domestica
ENSPCAG00000008733	APOBEC1	100	68.984	ENSMUSG00000040613	Apobec1	99	71.429	Mus_musculus
ENSPCAG00000008733	APOBEC1	100	68.449	MGP_PahariEiJ_G0022580	-	99	70.536	Mus_pahari
ENSPCAG00000008733	APOBEC1	100	68.984	MGP_SPRETEiJ_G0029857	Apobec1	99	71.429	Mus_spretus
ENSPCAG00000008733	APOBEC1	100	75.936	ENSMPUG00000017532	APOBEC1	79	75.936	Mustela_putorius_furo
ENSPCAG00000008733	APOBEC1	100	69.519	ENSNGAG00000022607	Apobec1	82	69.519	Nannospalax_galili
ENSPCAG00000008733	APOBEC1	100	80.214	ENSNLEG00000005342	APOBEC1	79	80.214	Nomascus_leucogenys
ENSPCAG00000008733	APOBEC1	100	66.310	ENSMEUG00000013406	APOBEC1	79	66.310	Notamacropus_eugenii
ENSPCAG00000008733	APOBEC1	97	62.431	ENSOPRG00000009508	-	100	62.431	Ochotona_princeps
ENSPCAG00000008733	APOBEC1	52	67.347	ENSODEG00000001157	-	100	67.347	Octodon_degus
ENSPCAG00000008733	APOBEC1	100	75.936	ENSOCUG00000025736	APOBEC1	70	75.936	Oryctolagus_cuniculus
ENSPCAG00000008733	APOBEC1	100	78.075	ENSOGAG00000026415	APOBEC1	79	78.075	Otolemur_garnettii
ENSPCAG00000008733	APOBEC1	99	72.043	ENSOARG00000002072	APOBEC1	78	72.043	Ovis_aries
ENSPCAG00000008733	APOBEC1	100	71.123	ENSPPAG00000027657	APOBEC1	78	71.123	Pan_paniscus
ENSPCAG00000008733	APOBEC1	100	78.075	ENSPPRG00000012182	APOBEC1	79	78.075	Panthera_pardus
ENSPCAG00000008733	APOBEC1	100	78.075	ENSPTIG00000020280	APOBEC1	79	78.075	Panthera_tigris_altaica
ENSPCAG00000008733	APOBEC1	100	80.749	ENSPTRG00000004614	APOBEC1	79	80.749	Pan_troglodytes
ENSPCAG00000008733	APOBEC1	100	80.749	ENSPANG00000021027	APOBEC1	79	80.749	Papio_anubis
ENSPCAG00000008733	APOBEC1	67	48.333	ENSPSIG00000012791	-	71	48.333	Pelodiscus_sinensis
ENSPCAG00000008733	APOBEC1	99	43.011	ENSPSIG00000012568	-	81	43.011	Pelodiscus_sinensis
ENSPCAG00000008733	APOBEC1	100	68.449	ENSPEMG00000023841	Apobec1	82	68.449	Peromyscus_maniculatus_bairdii
ENSPCAG00000008733	APOBEC1	100	71.658	ENSPCIG00000023973	APOBEC1	79	71.658	Phascolarctos_cinereus
ENSPCAG00000008733	APOBEC1	100	79.679	ENSPPYG00000004228	APOBEC1	75	79.679	Pongo_abelii
ENSPCAG00000008733	APOBEC1	93	79.769	ENSPCOG00000013957	APOBEC1	77	79.769	Propithecus_coquereli
ENSPCAG00000008733	APOBEC1	79	78.912	ENSPVAG00000010709	APOBEC1	63	78.912	Pteropus_vampyrus
ENSPCAG00000008733	APOBEC1	100	70.588	ENSRNOG00000015411	Apobec1	82	70.588	Rattus_norvegicus
ENSPCAG00000008733	APOBEC1	100	79.679	ENSRBIG00000031161	APOBEC1	79	79.679	Rhinopithecus_bieti
ENSPCAG00000008733	APOBEC1	100	79.679	ENSRROG00000033576	APOBEC1	79	79.679	Rhinopithecus_roxellana
ENSPCAG00000008733	APOBEC1	93	80.347	ENSSBOG00000030587	APOBEC1	98	80.347	Saimiri_boliviensis_boliviensis
ENSPCAG00000008733	APOBEC1	95	71.348	ENSSHAG00000008925	APOBEC1	78	71.348	Sarcophilus_harrisii
ENSPCAG00000008733	APOBEC1	92	65.116	ENSSARG00000000032	-	100	65.116	Sorex_araneus
ENSPCAG00000008733	APOBEC1	70	68.462	ENSSARG00000011972	-	98	68.462	Sorex_araneus
ENSPCAG00000008733	APOBEC1	92	42.857	ENSSPUG00000009044	-	67	42.857	Sphenodon_punctatus
ENSPCAG00000008733	APOBEC1	100	72.727	ENSSSCG00000000668	APOBEC1	79	72.727	Sus_scrofa
ENSPCAG00000008733	APOBEC1	76	48.611	ENSTGUG00000013118	-	99	48.611	Taeniopygia_guttata
ENSPCAG00000008733	APOBEC1	92	73.256	ENSTBEG00000010043	APOBEC1	73	73.256	Tupaia_belangeri
ENSPCAG00000008733	APOBEC1	100	72.727	ENSTTRG00000014015	APOBEC1	100	72.727	Tursiops_truncatus
ENSPCAG00000008733	APOBEC1	100	74.332	ENSUAMG00000011636	APOBEC1	77	74.332	Ursus_americanus
ENSPCAG00000008733	APOBEC1	100	74.332	ENSUMAG00000016552	APOBEC1	77	74.332	Ursus_maritimus
ENSPCAG00000008733	APOBEC1	100	72.193	ENSVPAG00000001343	APOBEC1	79	72.193	Vicugna_pacos
ENSPCAG00000008733	APOBEC1	100	78.610	ENSVVUG00000010522	APOBEC1	79	78.610	Vulpes_vulpes