EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSPCAG00000009464 (Gene tree)
Gene ID
-
Gene Symbol
UPF3B
Alias
HUPF3B|MRX62|RENT3B|UPF3BP1|UPF3BP2|UPF3BP3|UPF3X
Full Name
UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type
protein_coding
Species
Procavia_capensis
Status
putative
Strand
Minus strand
Length
16959 bases
Position
chrscaffold_34296:2214-19172
Accession
20439
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPCAP00000008819Smg4_UPF3PF03467.152e-5411
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPCAT00000009454UPF3B-2011452-ENSPCAP00000008819483 (aa)-UPI00018AD694
Gene Model
Click here to download ENSPCAG00000009464's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSPCAG00000009464's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPCAG00000009464UPF3B8550.118ENSG00000169062UPF3A8648.667Homo_sapiens
ENSPCAG00000009464UPF3B10092.547ENSG00000125351UPF3B10092.547Homo_sapiens
ENSPCAG00000009464UPF3B9656.118ENSAPOG00000012775upf3b9653.165Acanthochromis_polyacanthus
ENSPCAG00000009464UPF3B10092.340ENSAMEG00000000163UPF3B10092.340Ailuropoda_melanoleuca
ENSPCAG00000009464UPF3B9048.444ENSAMEG00000004259UPF3A9540.948Ailuropoda_melanoleuca
ENSPCAG00000009464UPF3B9452.484ENSACIG00000013582upf3b9453.319Amphilophus_citrinellus
ENSPCAG00000009464UPF3B9655.274ENSAOCG00000000706upf3b9654.661Amphiprion_ocellaris
ENSPCAG00000009464UPF3B9655.907ENSAPEG00000005545upf3b9855.301Amphiprion_percula
ENSPCAG00000009464UPF3B9456.438ENSATEG00000018742upf3b9456.989Anabas_testudineus
ENSPCAG00000009464UPF3B9166.741ENSACAG00000003625UPF3B9964.213Anolis_carolinensis
ENSPCAG00000009464UPF3B10084.679ENSANAG00000025598-10090.265Aotus_nancymaae
ENSPCAG00000009464UPF3B5669.145ENSANAG00000033169-9368.401Aotus_nancymaae
ENSPCAG00000009464UPF3B10092.961ENSANAG00000021894-10095.539Aotus_nancymaae
ENSPCAG00000009464UPF3B9654.968ENSACLG00000001649upf3b9755.485Astatotilapia_calliptera
ENSPCAG00000009464UPF3B5660.071ENSAMXG00000000199upf3b8858.156Astyanax_mexicanus
ENSPCAG00000009464UPF3B6796.654ENSBTAG00000035615UPF3B10096.654Bos_taurus
ENSPCAG00000009464UPF3B8549.526ENSCJAG00000019102UPF3A8643.115Callithrix_jacchus
ENSPCAG00000009464UPF3B10092.547ENSCJAG00000004975UPF3B10095.539Callithrix_jacchus
ENSPCAG00000009464UPF3B10092.133ENSCAFG00000018426UPF3B10092.133Canis_familiaris
ENSPCAG00000009464UPF3B10087.164ENSCAFG00020004074UPF3B10093.162Canis_lupus_dingo
ENSPCAG00000009464UPF3B9161.416ENSCHIG00000011454-9859.827Capra_hircus
ENSPCAG00000009464UPF3B9892.585ENSCHIG00000018011-10096.283Capra_hircus
ENSPCAG00000009464UPF3B8448.821ENSCHIG00000008682UPF3A8143.527Capra_hircus
ENSPCAG00000009464UPF3B10092.961ENSCHIG00000000247-10092.961Capra_hircus
ENSPCAG00000009464UPF3B10090.269ENSTSYG00000014690UPF3B10093.548Carlito_syrichta
ENSPCAG00000009464UPF3B8549.526ENSCCAG00000018406UPF3A8644.045Cebus_capucinus
ENSPCAG00000009464UPF3B7068.056ENSCCAG00000021964-10068.056Cebus_capucinus
ENSPCAG00000009464UPF3B9956.067ENSCCAG00000029813-8768.519Cebus_capucinus
ENSPCAG00000009464UPF3B8550.237ENSCATG00000029733UPF3A8648.775Cercocebus_atys
ENSPCAG00000009464UPF3B10092.340ENSCATG00000017506UPF3B10095.911Cercocebus_atys
ENSPCAG00000009464UPF3B10087.164ENSCLAG00000003260UPF3B10087.164Chinchilla_lanigera
ENSPCAG00000009464UPF3B10092.547ENSCSAG00000018348UPF3B10092.547Chlorocebus_sabaeus
ENSPCAG00000009464UPF3B9963.061ENSCPBG00000020685UPF3B9962.857Chrysemys_picta_bellii
ENSPCAG00000009464UPF3B7095.911ENSCANG00000029220UPF3B10095.911Colobus_angolensis_palliatus
ENSPCAG00000009464UPF3B10079.794ENSCGRG00001006858-10080.000Cricetulus_griseus_chok1gshd
ENSPCAG00000009464UPF3B7579.670ENSCGRG00001013643-9476.944Cricetulus_griseus_chok1gshd
ENSPCAG00000009464UPF3B8980.600ENSCGRG00000007627Upf3b10080.831Cricetulus_griseus_crigri
ENSPCAG00000009464UPF3B9354.923ENSCSEG00000002046upf3b9055.991Cynoglossus_semilaevis
ENSPCAG00000009464UPF3B8554.048ENSCVAG00000005030upf3b9651.695Cyprinodon_variegatus
ENSPCAG00000009464UPF3B9855.144ENSDARG00000000489upf3b9755.761Danio_rerio
ENSPCAG00000009464UPF3B10093.168ENSDNOG00000008665UPF3B10093.168Dasypus_novemcinctus
ENSPCAG00000009464UPF3B7751.187ENSDNOG00000034391UPF3A7154.227Dasypus_novemcinctus
ENSPCAG00000009464UPF3B10084.886ENSDORG00000006077Upf3b10084.886Dipodomys_ordii
ENSPCAG00000009464UPF3B9050.337ENSEASG00005021884UPF3A8645.103Equus_asinus_asinus
ENSPCAG00000009464UPF3B9987.552ENSEASG00005012919UPF3B10093.805Equus_asinus_asinus
ENSPCAG00000009464UPF3B9050.562ENSECAG00000017141UPF3A8645.330Equus_caballus
ENSPCAG00000009464UPF3B9987.552ENSECAG00000016947UPF3B10087.552Equus_caballus
ENSPCAG00000009464UPF3B7557.221ENSELUG00000020389upf3b10051.462Esox_lucius
ENSPCAG00000009464UPF3B10091.753ENSFCAG00000004388UPF3B10092.371Felis_catus
ENSPCAG00000009464UPF3B9047.661ENSFCAG00000014602UPF3A8244.417Felis_catus
ENSPCAG00000009464UPF3B9967.063ENSFALG00000001569UPF3B9966.865Ficedula_albicollis
ENSPCAG00000009464UPF3B10088.406ENSFDAG00000018869UPF3B10088.406Fukomys_damarensis
ENSPCAG00000009464UPF3B9350.976ENSFHEG00000017895upf3b9351.304Fundulus_heteroclitus
ENSPCAG00000009464UPF3B9353.879ENSGMOG00000001621upf3b9354.526Gadus_morhua
ENSPCAG00000009464UPF3B9168.080ENSGALG00000008618UPF3B9967.276Gallus_gallus
ENSPCAG00000009464UPF3B8853.846ENSGAFG00000000829upf3b9952.708Gambusia_affinis
ENSPCAG00000009464UPF3B9253.913ENSGACG00000017435upf3b9466.912Gasterosteus_aculeatus
ENSPCAG00000009464UPF3B9965.918ENSGAGG00000001219UPF3B9965.918Gopherus_agassizii
ENSPCAG00000009464UPF3B8342.410ENSGGOG00000043074-8137.530Gorilla_gorilla
ENSPCAG00000009464UPF3B8549.882ENSGGOG00000015428UPF3A8648.444Gorilla_gorilla
ENSPCAG00000009464UPF3B10092.547ENSGGOG00000023995UPF3B10095.911Gorilla_gorilla
ENSPCAG00000009464UPF3B8342.410ENSGGOG00000041219-8637.713Gorilla_gorilla
ENSPCAG00000009464UPF3B9654.968ENSHBUG00000017393upf3b9753.165Haplochromis_burtoni
ENSPCAG00000009464UPF3B10088.406ENSHGLG00000019582-10088.406Heterocephalus_glaber_female
ENSPCAG00000009464UPF3B8681.205ENSHGLG00000011189-9681.205Heterocephalus_glaber_female
ENSPCAG00000009464UPF3B10085.300ENSHGLG00100002042-10085.714Heterocephalus_glaber_male
ENSPCAG00000009464UPF3B8681.205ENSHGLG00100001889-9680.482Heterocephalus_glaber_male
ENSPCAG00000009464UPF3B9355.484ENSHCOG00000017004upf3b9354.095Hippocampus_comes
ENSPCAG00000009464UPF3B9157.301ENSIPUG00000019249upf3b10055.152Ictalurus_punctatus
ENSPCAG00000009464UPF3B10089.234ENSSTOG00000001101UPF3B10089.234Ictidomys_tridecemlineatus
ENSPCAG00000009464UPF3B10085.361ENSJJAG00000000053Upf3b10085.567Jaculus_jaculus
ENSPCAG00000009464UPF3B9853.734ENSKMAG00000020300upf3b9952.479Kryptolebias_marmoratus
ENSPCAG00000009464UPF3B6361.889ENSLBEG00000028689upf3b6061.639Labrus_bergylta
ENSPCAG00000009464UPF3B9058.991ENSLACG00000008691UPF3B10056.693Latimeria_chalumnae
ENSPCAG00000009464UPF3B9050.776ENSLOCG00000002665upf3a9146.578Lepisosteus_oculatus
ENSPCAG00000009464UPF3B5270.980ENSLOCG00000015238upf3b9160.142Lepisosteus_oculatus
ENSPCAG00000009464UPF3B8644.366ENSLAFG00000023358UPF3A9744.000Loxodonta_africana
ENSPCAG00000009464UPF3B10091.097ENSLAFG00000001267UPF3B10091.097Loxodonta_africana
ENSPCAG00000009464UPF3B10092.133ENSMFAG00000045414UPF3B10095.911Macaca_fascicularis
ENSPCAG00000009464UPF3B10092.133ENSMMUG00000020222UPF3B10095.911Macaca_mulatta
ENSPCAG00000009464UPF3B8249.633ENSMMUG00000007449UPF3A8649.061Macaca_mulatta
ENSPCAG00000009464UPF3B10092.133ENSMNEG00000039794UPF3B10095.911Macaca_nemestrina
ENSPCAG00000009464UPF3B8349.880ENSMNEG00000036402UPF3A7949.880Macaca_nemestrina
ENSPCAG00000009464UPF3B8349.398ENSMLEG00000014726UPF3A8948.810Mandrillus_leucophaeus
ENSPCAG00000009464UPF3B10092.340ENSMLEG00000010999UPF3B10095.911Mandrillus_leucophaeus
ENSPCAG00000009464UPF3B9654.757ENSMZEG00005007871upf3b9755.274Maylandia_zebra
ENSPCAG00000009464UPF3B8650.117ENSMGAG00000014837UPF3A9649.879Meleagris_gallopavo
ENSPCAG00000009464UPF3B8167.332ENSMGAG00000007728UPF3B9868.500Meleagris_gallopavo
ENSPCAG00000009464UPF3B10083.918ENSMAUG00000008705Upf3b10084.124Mesocricetus_auratus
ENSPCAG00000009464UPF3B7095.185ENSMICG00000001743UPF3B10095.185Microcebus_murinus
ENSPCAG00000009464UPF3B10085.567ENSMOCG00000017893Upf3b10085.773Microtus_ochrogaster
ENSPCAG00000009464UPF3B9652.442ENSMMOG00000004183upf3b9653.390Mola_mola
ENSPCAG00000009464UPF3B8972.831ENSMODG00000010232UPF3B9972.603Monodelphis_domestica
ENSPCAG00000009464UPF3B8851.357ENSMODG00000003159UPF3A9650.340Monodelphis_domestica
ENSPCAG00000009464UPF3B6064.746ENSMALG00000008042upf3b9454.274Monopterus_albus
ENSPCAG00000009464UPF3B10081.649MGP_CAROLIEiJ_G0032999Upf3b10081.856Mus_caroli
ENSPCAG00000009464UPF3B10081.856ENSMUSG00000036572Upf3b10082.062Mus_musculus
ENSPCAG00000009464UPF3B10080.825MGP_PahariEiJ_G0031543Upf3b10081.031Mus_pahari
ENSPCAG00000009464UPF3B10081.856MGP_SPRETEiJ_G0034152Upf3b10082.062Mus_spretus
ENSPCAG00000009464UPF3B9044.719ENSMPUG00000009139UPF3A8442.141Mustela_putorius_furo
ENSPCAG00000009464UPF3B9889.619ENSMPUG00000001531UPF3B10089.619Mustela_putorius_furo
ENSPCAG00000009464UPF3B10088.820ENSMLUG00000010821UPF3B10088.820Myotis_lucifugus
ENSPCAG00000009464UPF3B10080.619ENSNGAG00000008231Upf3b10081.856Nannospalax_galili
ENSPCAG00000009464UPF3B8549.409ENSNLEG00000007563UPF3A8843.016Nomascus_leucogenys
ENSPCAG00000009464UPF3B9792.340ENSNLEG00000014897UPF3B10092.133Nomascus_leucogenys
ENSPCAG00000009464UPF3B6483.226ENSMEUG00000015615UPF3B8183.333Notamacropus_eugenii
ENSPCAG00000009464UPF3B10082.195ENSODEG00000002186-10081.988Octodon_degus
ENSPCAG00000009464UPF3B10054.545ENSONIG00000002536upf3b10053.226Oreochromis_niloticus
ENSPCAG00000009464UPF3B10091.718ENSOCUG00000010213UPF3B10091.718Oryctolagus_cuniculus
ENSPCAG00000009464UPF3B8655.684ENSORLG00000001026upf3b9454.604Oryzias_latipes
ENSPCAG00000009464UPF3B8748.322ENSORLG00020014317upf3a8449.537Oryzias_latipes_hni
ENSPCAG00000009464UPF3B8655.196ENSORLG00020003758upf3b9454.371Oryzias_latipes_hni
ENSPCAG00000009464UPF3B8654.988ENSORLG00015012954upf3b9653.556Oryzias_latipes_hsok
ENSPCAG00000009464UPF3B8753.440ENSOMEG00000014736upf3b9853.512Oryzias_melastigma
ENSPCAG00000009464UPF3B9876.744ENSOGAG00000033003-10077.167Otolemur_garnettii
ENSPCAG00000009464UPF3B10088.820ENSOGAG00000004643-10088.820Otolemur_garnettii
ENSPCAG00000009464UPF3B9066.055ENSOARG00000007869-9963.616Ovis_aries
ENSPCAG00000009464UPF3B10092.387ENSOARG00000016051-10092.387Ovis_aries
ENSPCAG00000009464UPF3B9048.124ENSOARG00000009004UPF3A8743.875Ovis_aries
ENSPCAG00000009464UPF3B8549.645ENSPPAG00000042267UPF3A8643.182Pan_paniscus
ENSPCAG00000009464UPF3B10092.547ENSPPAG00000040390UPF3B10095.911Pan_paniscus
ENSPCAG00000009464UPF3B9046.930ENSPPRG00000025062UPF3A8742.729Panthera_pardus
ENSPCAG00000009464UPF3B10092.754ENSPPRG00000023536UPF3B10092.754Panthera_pardus
ENSPCAG00000009464UPF3B10089.537ENSPTIG00000015264UPF3B10097.026Panthera_tigris_altaica
ENSPCAG00000009464UPF3B8341.019ENSPTRG00000051640-8637.192Pan_troglodytes
ENSPCAG00000009464UPF3B8549.645ENSPTRG00000006073UPF3A8643.182Pan_troglodytes
ENSPCAG00000009464UPF3B8337.470ENSPTRG00000041835-8639.659Pan_troglodytes
ENSPCAG00000009464UPF3B10092.547ENSPTRG00000022228UPF3B10095.911Pan_troglodytes
ENSPCAG00000009464UPF3B10092.340ENSPANG00000000900UPF3B10095.911Papio_anubis
ENSPCAG00000009464UPF3B9048.330ENSPANG00000004346UPF3A8647.797Papio_anubis
ENSPCAG00000009464UPF3B9155.165ENSPKIG00000019226upf3b9262.420Paramormyrops_kingsleyae
ENSPCAG00000009464UPF3B5670.909ENSPSIG00000005833UPF3B9270.956Pelodiscus_sinensis
ENSPCAG00000009464UPF3B8353.865ENSPSIG00000007468UPF3A9351.807Pelodiscus_sinensis
ENSPCAG00000009464UPF3B5667.399ENSPMGG00000016067upf3b9466.058Periophthalmus_magnuspinnatus
ENSPCAG00000009464UPF3B10085.802ENSPEMG00000012352Upf3b10086.008Peromyscus_maniculatus_bairdii
ENSPCAG00000009464UPF3B9368.640ENSPCIG00000028914UPF3B9666.314Phascolarctos_cinereus
ENSPCAG00000009464UPF3B7057.205ENSPCIG00000019590-7364.407Phascolarctos_cinereus
ENSPCAG00000009464UPF3B9853.138ENSPLAG00000019922upf3b9854.298Poecilia_latipinna
ENSPCAG00000009464UPF3B5068.354ENSPLAG00000011960upf3a8349.644Poecilia_latipinna
ENSPCAG00000009464UPF3B9853.138ENSPLAG00000005105upf3b9854.298Poecilia_latipinna
ENSPCAG00000009464UPF3B9853.347ENSPMEG00000023532upf3b9854.507Poecilia_mexicana
ENSPCAG00000009464UPF3B6996.099ENSPPYG00000020675-10096.099Pongo_abelii
ENSPCAG00000009464UPF3B8549.409ENSPPYG00000005536UPF3A8648.222Pongo_abelii
ENSPCAG00000009464UPF3B10092.769ENSPCOG00000021960UPF3B10095.926Propithecus_coquereli
ENSPCAG00000009464UPF3B10080.124ENSPVAG00000014075UPF3B10080.124Pteropus_vampyrus
ENSPCAG00000009464UPF3B9655.202ENSPNYG00000009846upf3b9655.508Pundamilia_nyererei
ENSPCAG00000009464UPF3B9855.102ENSPNAG00000021528upf3b9955.510Pygocentrus_nattereri
ENSPCAG00000009464UPF3B10084.742ENSRNOG00000039994Upf3b10084.948Rattus_norvegicus
ENSPCAG00000009464UPF3B8290.176ENSRBIG00000037219UPF3B9990.404Rhinopithecus_bieti
ENSPCAG00000009464UPF3B8349.517ENSRBIG00000034007UPF3A9147.085Rhinopithecus_bieti
ENSPCAG00000009464UPF3B10092.547ENSRROG00000041031UPF3B10095.911Rhinopithecus_roxellana
ENSPCAG00000009464UPF3B8349.758ENSRROG00000012212UPF3A8050.000Rhinopithecus_roxellana
ENSPCAG00000009464UPF3B7646.053ENSSBOG00000029989UPF3A8537.753Saimiri_boliviensis_boliviensis
ENSPCAG00000009464UPF3B10092.754ENSSBOG00000019740UPF3B10095.167Saimiri_boliviensis_boliviensis
ENSPCAG00000009464UPF3B8850.567ENSSHAG00000009895UPF3A9849.545Sarcophilus_harrisii
ENSPCAG00000009464UPF3B8872.390ENSSHAG00000008634UPF3B9967.423Sarcophilus_harrisii
ENSPCAG00000009464UPF3B10055.714ENSSFOG00015005614upf3b10057.434Scleropages_formosus
ENSPCAG00000009464UPF3B9354.329ENSSMAG00000012913upf3b8467.279Scophthalmus_maximus
ENSPCAG00000009464UPF3B5571.166ENSSDUG00000009680upf3a5777.419Seriola_dumerili
ENSPCAG00000009464UPF3B8750.805ENSSDUG00000005682upf3b9849.795Seriola_dumerili
ENSPCAG00000009464UPF3B9752.273ENSSLDG00000003130upf3b9853.689Seriola_lalandi_dorsalis
ENSPCAG00000009464UPF3B8984.101ENSSARG00000004147UPF3B10084.101Sorex_araneus
ENSPCAG00000009464UPF3B9964.113ENSSPUG00000013082UPF3B9962.777Sphenodon_punctatus
ENSPCAG00000009464UPF3B6064.407ENSSPAG00000009989upf3b9854.470Stegastes_partitus
ENSPCAG00000009464UPF3B10089.441ENSSSCG00000012617UPF3B10089.441Sus_scrofa
ENSPCAG00000009464UPF3B8969.545ENSTGUG00000003413UPF3B9969.545Taeniopygia_guttata
ENSPCAG00000009464UPF3B8454.306ENSTGUG00000009493UPF3A9953.237Taeniopygia_guttata
ENSPCAG00000009464UPF3B8854.734ENSTRUG00000010645upf3b9953.086Takifugu_rubripes
ENSPCAG00000009464UPF3B8753.256ENSTNIG00000015763upf3b9047.380Tetraodon_nigroviridis
ENSPCAG00000009464UPF3B10077.433ENSTBEG00000003229UPF3B10077.433Tupaia_belangeri
ENSPCAG00000009464UPF3B7645.932ENSTTRG00000015414UPF3A7340.107Tursiops_truncatus
ENSPCAG00000009464UPF3B10085.773ENSUAMG00000024565UPF3B10090.265Ursus_americanus
ENSPCAG00000009464UPF3B9381.342ENSUMAG00000002150UPF3B9980.713Ursus_maritimus
ENSPCAG00000009464UPF3B8591.707ENSVPAG00000009971UPF3B10091.707Vicugna_pacos
ENSPCAG00000009464UPF3B10087.164ENSVVUG00000011594UPF3B10093.162Vulpes_vulpes
ENSPCAG00000009464UPF3B8444.952ENSXETG00000002572upf3a9044.471Xenopus_tropicalis
ENSPCAG00000009464UPF3B8554.869ENSXETG00000007440upf3b7777.401Xenopus_tropicalis
ENSPCAG00000009464UPF3B9750.313ENSXCOG00000016586upf3b9765.403Xiphophorus_couchianus
ENSPCAG00000009464UPF3B9652.500ENSXMAG00000013680upf3b9952.708Xiphophorus_maculatus

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