EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPCAG00000009987 (Gene tree)
Gene ID: -
Gene Symbol: PRDM4
Alias: PFM1
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Procavia_capensis
Status: putative
Strand: Minus strand
Length: 33614 bases
Position: chrGeneScaffold_3334:67221-100834
Accession: 9348
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCAP00000009318	zf-C2H2	PF00096.26	3.4e-20	1	2
ENSPCAP00000009318	zf-C2H2	PF00096.26	3.4e-20	2	2
ENSPCAP00000009318	zf-met	PF12874.7	0.00017	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCAT00000009983	PRDM4-201	2406	-	ENSPCAP00000009318	801 (aa)	-	UPI00018AF863

Gene Model

Click here to download ENSPCAG00000009987's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCAG00000009987's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPCAG00000009987	PRDM4	52	30.612	ENSPCAG00000014514	PRDM10	61	30.120

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCAG00000009987	PRDM4	83	95.833	ENSG00000110851	PRDM4	100	93.907	Homo_sapiens
ENSPCAG00000009987	PRDM4	83	97.778	ENSAMEG00000016174	PRDM4	83	97.778	Ailuropoda_melanoleuca
ENSPCAG00000009987	PRDM4	83	93.333	ENSAPLG00000009846	PRDM4	83	93.333	Anas_platyrhynchos
ENSPCAG00000009987	PRDM4	83	95.833	ENSANAG00000024800	PRDM4	83	95.833	Aotus_nancymaae
ENSPCAG00000009987	PRDM4	83	97.917	ENSBTAG00000012999	PRDM4	83	97.917	Bos_taurus
ENSPCAG00000009987	PRDM4	83	95.833	ENSCJAG00000015261	PRDM4	83	95.833	Callithrix_jacchus
ENSPCAG00000009987	PRDM4	83	97.917	ENSCAFG00000001788	PRDM4	83	97.917	Canis_familiaris
ENSPCAG00000009987	PRDM4	83	97.917	ENSCAFG00020004916	PRDM4	83	97.917	Canis_lupus_dingo
ENSPCAG00000009987	PRDM4	83	96.117	ENSCHIG00000019409	PRDM4	83	96.117	Capra_hircus
ENSPCAG00000009987	PRDM4	83	96.278	ENSTSYG00000009248	PRDM4	83	96.278	Carlito_syrichta
ENSPCAG00000009987	PRDM4	83	93.182	ENSCAPG00000013937	PRDM4	83	93.182	Cavia_aperea
ENSPCAG00000009987	PRDM4	83	93.182	ENSCPOG00000022385	PRDM4	83	93.182	Cavia_porcellus
ENSPCAG00000009987	PRDM4	83	95.833	ENSCCAG00000036033	PRDM4	83	95.833	Cebus_capucinus
ENSPCAG00000009987	PRDM4	83	95.833	ENSCATG00000044797	PRDM4	83	95.833	Cercocebus_atys
ENSPCAG00000009987	PRDM4	83	90.909	ENSCLAG00000007545	PRDM4	83	91.200	Chinchilla_lanigera
ENSPCAG00000009987	PRDM4	83	95.833	ENSCSAG00000002896	PRDM4	83	95.833	Chlorocebus_sabaeus
ENSPCAG00000009987	PRDM4	63	91.667	ENSCHOG00000001744	PRDM4	74	91.667	Choloepus_hoffmanni
ENSPCAG00000009987	PRDM4	83	90.698	ENSCPBG00000023187	PRDM4	83	90.698	Chrysemys_picta_bellii
ENSPCAG00000009987	PRDM4	83	95.833	ENSCANG00000021804	PRDM4	83	95.833	Colobus_angolensis_palliatus
ENSPCAG00000009987	PRDM4	83	91.360	ENSCGRG00001015102	-	83	90.880	Cricetulus_griseus_chok1gshd
ENSPCAG00000009987	PRDM4	77	91.360	ENSCGRG00000004044	-	81	90.880	Cricetulus_griseus_crigri
ENSPCAG00000009987	PRDM4	83	96.423	ENSDNOG00000032478	PRDM4	83	96.423	Dasypus_novemcinctus
ENSPCAG00000009987	PRDM4	83	93.023	ENSDORG00000015081	-	85	93.023	Dipodomys_ordii
ENSPCAG00000009987	PRDM4	70	44.129	ENSEBUG00000003775	prdm4	72	43.939	Eptatretus_burgeri
ENSPCAG00000009987	PRDM4	83	97.917	ENSECAG00000015423	PRDM4	90	97.917	Equus_caballus
ENSPCAG00000009987	PRDM4	77	92.545	ENSEEUG00000006569	PRDM4	82	92.058	Erinaceus_europaeus
ENSPCAG00000009987	PRDM4	83	61.364	ENSELUG00000015265	prdm4	84	61.364	Esox_lucius
ENSPCAG00000009987	PRDM4	83	100.000	ENSFCAG00000022478	PRDM4	84	100.000	Felis_catus
ENSPCAG00000009987	PRDM4	83	95.455	ENSFALG00000013342	PRDM4	83	95.455	Ficedula_albicollis
ENSPCAG00000009987	PRDM4	83	89.583	ENSGALG00000012619	PRDM4	83	89.583	Gallus_gallus
ENSPCAG00000009987	PRDM4	83	91.111	ENSGAGG00000002763	PRDM4	79	91.111	Gopherus_agassizii
ENSPCAG00000009987	PRDM4	83	95.745	ENSGGOG00000001244	PRDM4	83	95.745	Gorilla_gorilla
ENSPCAG00000009987	PRDM4	83	93.182	ENSHGLG00000004590	PRDM4	82	93.182	Heterocephalus_glaber_female
ENSPCAG00000009987	PRDM4	83	93.182	ENSHGLG00100007464	PRDM4	83	93.182	Heterocephalus_glaber_male
ENSPCAG00000009987	PRDM4	72	57.922	ENSIPUG00000024162	prdm4	71	58.491	Ictalurus_punctatus
ENSPCAG00000009987	PRDM4	83	95.146	ENSSTOG00000016168	PRDM4	83	95.146	Ictidomys_tridecemlineatus
ENSPCAG00000009987	PRDM4	65	92.632	ENSJJAG00000022448	-	76	92.632	Jaculus_jaculus
ENSPCAG00000009987	PRDM4	83	72.134	ENSLACG00000007452	PRDM4	83	72.452	Latimeria_chalumnae
ENSPCAG00000009987	PRDM4	58	65.854	ENSLOCG00000017092	prdm4	75	65.854	Lepisosteus_oculatus
ENSPCAG00000009987	PRDM4	81	97.727	ENSLAFG00000001483	PRDM4	83	97.727	Loxodonta_africana
ENSPCAG00000009987	PRDM4	83	95.833	ENSMFAG00000041862	PRDM4	83	95.833	Macaca_fascicularis
ENSPCAG00000009987	PRDM4	83	95.833	ENSMMUG00000015550	PRDM4	83	95.833	Macaca_mulatta
ENSPCAG00000009987	PRDM4	83	95.833	ENSMNEG00000032319	PRDM4	83	95.833	Macaca_nemestrina
ENSPCAG00000009987	PRDM4	83	95.833	ENSMLEG00000039607	PRDM4	83	95.833	Mandrillus_leucophaeus
ENSPCAG00000009987	PRDM4	83	93.182	ENSMGAG00000012815	PRDM4	83	93.182	Meleagris_gallopavo
ENSPCAG00000009987	PRDM4	83	95.833	ENSMICG00000007807	PRDM4	83	95.833	Microcebus_murinus
ENSPCAG00000009987	PRDM4	83	92.718	ENSMOCG00000000753	Prdm4	83	92.395	Microtus_ochrogaster
ENSPCAG00000009987	PRDM4	83	93.366	ENSMUSG00000035529	Prdm4	83	93.042	Mus_musculus
ENSPCAG00000009987	PRDM4	83	92.557	MGP_PahariEiJ_G0031398	Prdm4	83	92.557	Mus_pahari
ENSPCAG00000009987	PRDM4	83	94.175	MGP_SPRETEiJ_G0016505	Prdm4	83	94.175	Mus_spretus
ENSPCAG00000009987	PRDM4	83	97.778	ENSMPUG00000012238	PRDM4	83	97.778	Mustela_putorius_furo
ENSPCAG00000009987	PRDM4	83	97.778	ENSMLUG00000000767	PRDM4	83	97.778	Myotis_lucifugus
ENSPCAG00000009987	PRDM4	83	94.013	ENSNGAG00000018627	Prdm4	83	94.013	Nannospalax_galili
ENSPCAG00000009987	PRDM4	83	95.793	ENSNLEG00000006748	PRDM4	83	95.793	Nomascus_leucogenys
ENSPCAG00000009987	PRDM4	72	95.455	ENSMEUG00000004495	PRDM4	73	95.455	Notamacropus_eugenii
ENSPCAG00000009987	PRDM4	71	93.750	ENSOPRG00000010192	PRDM4	72	93.750	Ochotona_princeps
ENSPCAG00000009987	PRDM4	83	89.806	ENSODEG00000014750	PRDM4	83	89.968	Octodon_degus
ENSPCAG00000009987	PRDM4	83	97.917	ENSOANG00000005526	PRDM4	83	97.917	Ornithorhynchus_anatinus
ENSPCAG00000009987	PRDM4	76	96.154	ENSOCUG00000012859	PRDM4	78	96.154	Oryctolagus_cuniculus
ENSPCAG00000009987	PRDM4	83	96.117	ENSOGAG00000011945	PRDM4	83	96.117	Otolemur_garnettii
ENSPCAG00000009987	PRDM4	83	95.955	ENSOARG00000017955	PRDM4	83	95.955	Ovis_aries
ENSPCAG00000009987	PRDM4	83	95.833	ENSPPAG00000038438	PRDM4	83	95.833	Pan_paniscus
ENSPCAG00000009987	PRDM4	83	100.000	ENSPPRG00000004144	PRDM4	83	100.000	Panthera_pardus
ENSPCAG00000009987	PRDM4	83	100.000	ENSPTIG00000005847	PRDM4	83	100.000	Panthera_tigris_altaica
ENSPCAG00000009987	PRDM4	83	95.833	ENSPTRG00000005400	PRDM4	83	95.833	Pan_troglodytes
ENSPCAG00000009987	PRDM4	83	95.833	ENSPANG00000022084	PRDM4	83	95.833	Papio_anubis
ENSPCAG00000009987	PRDM4	82	61.364	ENSPKIG00000000875	prdm4	83	61.364	Paramormyrops_kingsleyae
ENSPCAG00000009987	PRDM4	71	90.909	ENSPSIG00000012066	PRDM4	88	90.909	Pelodiscus_sinensis
ENSPCAG00000009987	PRDM4	83	94.175	ENSPEMG00000014598	Prdm4	83	94.175	Peromyscus_maniculatus_bairdii
ENSPCAG00000009987	PRDM4	83	91.667	ENSPCIG00000009471	PRDM4	84	91.667	Phascolarctos_cinereus
ENSPCAG00000009987	PRDM4	83	95.833	ENSPPYG00000004913	PRDM4	83	95.833	Pongo_abelii
ENSPCAG00000009987	PRDM4	83	95.833	ENSPCOG00000021060	PRDM4	83	95.833	Propithecus_coquereli
ENSPCAG00000009987	PRDM4	83	95.833	ENSPVAG00000001596	PRDM4	83	95.833	Pteropus_vampyrus
ENSPCAG00000009987	PRDM4	83	92.407	ENSRNOG00000004962	Prdm4	83	91.922	Rattus_norvegicus
ENSPCAG00000009987	PRDM4	83	95.833	ENSRBIG00000035488	PRDM4	83	95.833	Rhinopithecus_bieti
ENSPCAG00000009987	PRDM4	83	95.833	ENSRROG00000012779	PRDM4	83	95.833	Rhinopithecus_roxellana
ENSPCAG00000009987	PRDM4	83	95.833	ENSSBOG00000000403	PRDM4	83	95.833	Saimiri_boliviensis_boliviensis
ENSPCAG00000009987	PRDM4	82	64.444	ENSSFOG00015023358	prdm4	83	63.636	Scleropages_formosus
ENSPCAG00000009987	PRDM4	83	97.917	ENSSSCG00000000160	PRDM4	83	97.917	Sus_scrofa
ENSPCAG00000009987	PRDM4	83	95.556	ENSTGUG00000010962	-	83	95.556	Taeniopygia_guttata
ENSPCAG00000009987	PRDM4	64	88.521	ENSTBEG00000001732	PRDM4	74	88.521	Tupaia_belangeri
ENSPCAG00000009987	PRDM4	83	97.917	ENSTTRG00000011056	PRDM4	83	97.917	Tursiops_truncatus
ENSPCAG00000009987	PRDM4	83	97.917	ENSUAMG00000022796	PRDM4	83	97.917	Ursus_americanus
ENSPCAG00000009987	PRDM4	83	97.917	ENSUMAG00000017231	PRDM4	83	97.917	Ursus_maritimus
ENSPCAG00000009987	PRDM4	83	97.727	ENSVPAG00000002215	PRDM4	83	97.727	Vicugna_pacos
ENSPCAG00000009987	PRDM4	83	97.917	ENSVVUG00000023397	PRDM4	83	97.917	Vulpes_vulpes