EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPCAG00000011305 (Gene tree)
Gene ID: -
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Procavia_capensis
Status: putative
Strand: Plus strand
Length: 425460 bases
Position: chrGeneScaffold_7150:793-426252
Accession: 30646
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCAP00000010634	TUDOR	PF00567.24	1.1e-28	1	1
ENSPCAP00000010634	SNase	PF00565.17	2.8e-64	1	5
ENSPCAP00000010634	SNase	PF00565.17	2.8e-64	2	5
ENSPCAP00000010634	SNase	PF00565.17	2.8e-64	3	5
ENSPCAP00000010634	SNase	PF00565.17	2.8e-64	4	5
ENSPCAP00000010634	SNase	PF00565.17	2.8e-64	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCAT00000011386	SND1-201	2730	-	ENSPCAP00000010634	909 (aa)	-	UPI00018B0D21

Gene Model

Click here to download ENSPCAG00000011305's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCAG00000011305's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCAG00000011305	SND1	99	86.511	ENSG00000197157	SND1	100	86.593	Homo_sapiens
ENSPCAG00000011305	SND1	100	74.123	ENSAPOG00000017599	snd1	100	74.123	Acanthochromis_polyacanthus
ENSPCAG00000011305	SND1	100	86.623	ENSAMEG00000004664	SND1	94	86.623	Ailuropoda_melanoleuca
ENSPCAG00000011305	SND1	98	75.140	ENSACIG00000003551	snd1	100	74.314	Amphilophus_citrinellus
ENSPCAG00000011305	SND1	100	73.904	ENSAOCG00000014166	snd1	100	73.904	Amphiprion_ocellaris
ENSPCAG00000011305	SND1	100	73.904	ENSAPEG00000007067	snd1	100	73.904	Amphiprion_percula
ENSPCAG00000011305	SND1	98	72.900	ENSATEG00000018475	snd1	88	74.002	Anabas_testudineus
ENSPCAG00000011305	SND1	99	86.511	ENSANAG00000034463	SND1	100	86.593	Aotus_nancymaae
ENSPCAG00000011305	SND1	99	73.516	ENSACLG00000022897	snd1	99	74.276	Astatotilapia_calliptera
ENSPCAG00000011305	SND1	100	73.989	ENSAMXG00000016318	snd1	98	74.610	Astyanax_mexicanus
ENSPCAG00000011305	SND1	99	86.288	ENSBTAG00000010692	SND1	100	86.374	Bos_taurus
ENSPCAG00000011305	SND1	98	40.944	WBGene00006626	tsn-1	98	40.944	Caenorhabditis_elegans
ENSPCAG00000011305	SND1	99	86.399	ENSCJAG00000017668	SND1	100	86.484	Callithrix_jacchus
ENSPCAG00000011305	SND1	100	86.703	ENSCAFG00000001700	SND1	100	86.703	Canis_familiaris
ENSPCAG00000011305	SND1	100	86.703	ENSCAFG00020021639	SND1	100	86.703	Canis_lupus_dingo
ENSPCAG00000011305	SND1	99	86.622	ENSCHIG00000023390	SND1	100	86.703	Capra_hircus
ENSPCAG00000011305	SND1	73	80.106	ENSTSYG00000004979	SND1	97	80.106	Carlito_syrichta
ENSPCAG00000011305	SND1	99	76.333	ENSCAPG00000010677	SND1	98	75.553	Cavia_aperea
ENSPCAG00000011305	SND1	99	85.619	ENSCPOG00000006251	SND1	100	85.714	Cavia_porcellus
ENSPCAG00000011305	SND1	99	86.622	ENSCCAG00000036847	SND1	100	86.703	Cebus_capucinus
ENSPCAG00000011305	SND1	99	86.734	ENSCATG00000035214	SND1	100	86.813	Cercocebus_atys
ENSPCAG00000011305	SND1	99	85.953	ENSCLAG00000011796	SND1	100	86.044	Chinchilla_lanigera
ENSPCAG00000011305	SND1	99	86.734	ENSCSAG00000010182	SND1	100	86.813	Chlorocebus_sabaeus
ENSPCAG00000011305	SND1	66	89.216	ENSCHOG00000002218	SND1	77	89.216	Choloepus_hoffmanni
ENSPCAG00000011305	SND1	100	80.989	ENSCPBG00000018094	SND1	98	81.839	Chrysemys_picta_bellii
ENSPCAG00000011305	SND1	98	48.726	ENSCING00000000524	-	98	48.505	Ciona_intestinalis
ENSPCAG00000011305	SND1	99	50.330	ENSCSAVG00000008807	-	99	50.221	Ciona_savignyi
ENSPCAG00000011305	SND1	99	86.734	ENSCANG00000035119	SND1	100	86.813	Colobus_angolensis_palliatus
ENSPCAG00000011305	SND1	99	85.284	ENSCGRG00001022514	Snd1	100	85.275	Cricetulus_griseus_chok1gshd
ENSPCAG00000011305	SND1	97	85.068	ENSCGRG00000012277	Snd1	99	85.068	Cricetulus_griseus_crigri
ENSPCAG00000011305	SND1	99	73.407	ENSCSEG00000008661	snd1	98	74.497	Cynoglossus_semilaevis
ENSPCAG00000011305	SND1	99	74.311	ENSCVAG00000010316	snd1	100	73.218	Cyprinodon_variegatus
ENSPCAG00000011305	SND1	100	74.808	ENSDARG00000006766	snd1	98	77.148	Danio_rerio
ENSPCAG00000011305	SND1	97	83.427	ENSDNOG00000006795	SND1	100	83.427	Dasypus_novemcinctus
ENSPCAG00000011305	SND1	99	85.953	ENSDORG00000000336	Snd1	100	86.044	Dipodomys_ordii
ENSPCAG00000011305	SND1	98	45.070	FBgn0035121	Tudor-SN	98	44.962	Drosophila_melanogaster
ENSPCAG00000011305	SND1	90	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSPCAG00000011305	SND1	69	44.619	ENSEBUG00000014201	-	84	61.202	Eptatretus_burgeri
ENSPCAG00000011305	SND1	100	85.313	ENSEASG00005008513	SND1	100	85.313	Equus_asinus_asinus
ENSPCAG00000011305	SND1	99	86.622	ENSECAG00000011451	SND1	100	86.593	Equus_caballus
ENSPCAG00000011305	SND1	100	75.165	ENSEEUG00000014737	SND1	100	75.165	Erinaceus_europaeus
ENSPCAG00000011305	SND1	99	72.368	ENSELUG00000001805	snd1	95	73.021	Esox_lucius
ENSPCAG00000011305	SND1	100	86.593	ENSFCAG00000008289	SND1	100	86.593	Felis_catus
ENSPCAG00000011305	SND1	98	85.922	ENSFDAG00000015881	SND1	100	85.934	Fukomys_damarensis
ENSPCAG00000011305	SND1	99	72.276	ENSFHEG00000004093	snd1	97	74.040	Fundulus_heteroclitus
ENSPCAG00000011305	SND1	72	75.921	ENSGMOG00000018932	snd1	64	75.921	Gadus_morhua
ENSPCAG00000011305	SND1	100	74.232	ENSGAFG00000008421	snd1	99	74.972	Gambusia_affinis
ENSPCAG00000011305	SND1	91	78.470	ENSGACG00000019793	snd1	92	78.470	Gasterosteus_aculeatus
ENSPCAG00000011305	SND1	99	86.734	ENSGGOG00000009614	SND1	100	86.813	Gorilla_gorilla
ENSPCAG00000011305	SND1	99	73.899	ENSHBUG00000019135	snd1	99	74.276	Haplochromis_burtoni
ENSPCAG00000011305	SND1	99	85.619	ENSHGLG00000003618	SND1	100	85.714	Heterocephalus_glaber_female
ENSPCAG00000011305	SND1	99	85.304	ENSHGLG00100012449	SND1	99	85.619	Heterocephalus_glaber_male
ENSPCAG00000011305	SND1	100	72.478	ENSHCOG00000005266	snd1	98	73.490	Hippocampus_comes
ENSPCAG00000011305	SND1	100	72.757	ENSIPUG00000013279	snd1	100	72.757	Ictalurus_punctatus
ENSPCAG00000011305	SND1	99	86.065	ENSSTOG00000002140	SND1	100	86.154	Ictidomys_tridecemlineatus
ENSPCAG00000011305	SND1	99	86.399	ENSJJAG00000009561	Snd1	100	86.484	Jaculus_jaculus
ENSPCAG00000011305	SND1	100	74.013	ENSKMAG00000016997	snd1	98	74.832	Kryptolebias_marmoratus
ENSPCAG00000011305	SND1	100	75.556	ENSLBEG00000013563	snd1	100	72.697	Labrus_bergylta
ENSPCAG00000011305	SND1	99	75.524	ENSLOCG00000015537	snd1	98	75.524	Lepisosteus_oculatus
ENSPCAG00000011305	SND1	100	86.374	ENSLAFG00000009696	SND1	100	86.374	Loxodonta_africana
ENSPCAG00000011305	SND1	99	86.734	ENSMFAG00000038114	SND1	100	86.813	Macaca_fascicularis
ENSPCAG00000011305	SND1	99	86.734	ENSMMUG00000015432	SND1	100	86.813	Macaca_mulatta
ENSPCAG00000011305	SND1	99	86.734	ENSMNEG00000039808	SND1	100	86.813	Macaca_nemestrina
ENSPCAG00000011305	SND1	99	86.622	ENSMLEG00000029040	SND1	100	86.703	Mandrillus_leucophaeus
ENSPCAG00000011305	SND1	99	73.736	ENSMAMG00000011739	snd1	98	74.665	Mastacembelus_armatus
ENSPCAG00000011305	SND1	99	73.516	ENSMZEG00005005681	snd1	99	74.276	Maylandia_zebra
ENSPCAG00000011305	SND1	99	86.399	ENSMICG00000000097	SND1	100	86.484	Microcebus_murinus
ENSPCAG00000011305	SND1	99	85.730	ENSMOCG00000005040	Snd1	100	85.824	Microtus_ochrogaster
ENSPCAG00000011305	SND1	100	73.684	ENSMMOG00000001795	snd1	100	73.684	Mola_mola
ENSPCAG00000011305	SND1	99	84.169	ENSMODG00000015182	SND1	100	84.286	Monodelphis_domestica
ENSPCAG00000011305	SND1	100	73.575	ENSMALG00000012071	snd1	98	74.219	Monopterus_albus
ENSPCAG00000011305	SND1	98	85.251	MGP_CAROLIEiJ_G0028159	Snd1	100	85.275	Mus_caroli
ENSPCAG00000011305	SND1	98	85.028	ENSMUSG00000001424	Snd1	100	85.055	Mus_musculus
ENSPCAG00000011305	SND1	98	85.251	MGP_PahariEiJ_G0021917	Snd1	100	85.275	Mus_pahari
ENSPCAG00000011305	SND1	98	85.251	MGP_SPRETEiJ_G0029159	Snd1	100	85.275	Mus_spretus
ENSPCAG00000011305	SND1	100	85.934	ENSMPUG00000006545	SND1	100	85.385	Mustela_putorius_furo
ENSPCAG00000011305	SND1	97	84.581	ENSMLUG00000017130	SND1	99	83.911	Myotis_lucifugus
ENSPCAG00000011305	SND1	99	85.507	ENSNGAG00000011186	Snd1	100	85.604	Nannospalax_galili
ENSPCAG00000011305	SND1	99	73.407	ENSNBRG00000006681	snd1	99	74.165	Neolamprologus_brichardi
ENSPCAG00000011305	SND1	100	86.703	ENSNLEG00000012263	SND1	100	86.554	Nomascus_leucogenys
ENSPCAG00000011305	SND1	91	100.000	ENSOPRG00000013405	SND1	92	100.000	Ochotona_princeps
ENSPCAG00000011305	SND1	99	86.065	ENSODEG00000011502	SND1	99	86.065	Octodon_degus
ENSPCAG00000011305	SND1	99	73.407	ENSONIG00000011481	snd1	96	74.165	Oreochromis_niloticus
ENSPCAG00000011305	SND1	98	83.108	ENSOANG00000000817	SND1	99	82.609	Ornithorhynchus_anatinus
ENSPCAG00000011305	SND1	100	85.275	ENSOCUG00000001620	SND1	99	85.284	Oryctolagus_cuniculus
ENSPCAG00000011305	SND1	98	73.743	ENSORLG00000015201	snd1	98	73.743	Oryzias_latipes
ENSPCAG00000011305	SND1	98	73.855	ENSORLG00020013991	snd1	98	73.855	Oryzias_latipes_hni
ENSPCAG00000011305	SND1	98	73.855	ENSORLG00015012436	snd1	98	73.855	Oryzias_latipes_hsok
ENSPCAG00000011305	SND1	100	73.355	ENSOMEG00000006406	snd1	98	74.497	Oryzias_melastigma
ENSPCAG00000011305	SND1	99	86.541	ENSOGAG00000013356	SND1	94	86.623	Otolemur_garnettii
ENSPCAG00000011305	SND1	97	83.616	ENSOARG00000002149	SND1	100	83.616	Ovis_aries
ENSPCAG00000011305	SND1	99	86.622	ENSPPAG00000042947	SND1	100	86.703	Pan_paniscus
ENSPCAG00000011305	SND1	100	86.593	ENSPPRG00000004494	SND1	100	86.593	Panthera_pardus
ENSPCAG00000011305	SND1	100	86.484	ENSPTIG00000014214	SND1	100	86.484	Panthera_tigris_altaica
ENSPCAG00000011305	SND1	99	86.622	ENSPTRG00000023911	SND1	100	86.703	Pan_troglodytes
ENSPCAG00000011305	SND1	97	86.538	ENSPANG00000011997	SND1	99	86.538	Papio_anubis
ENSPCAG00000011305	SND1	99	71.334	ENSPKIG00000023494	snd1	98	71.587	Paramormyrops_kingsleyae
ENSPCAG00000011305	SND1	92	72.695	ENSPMGG00000003629	snd1	100	72.695	Periophthalmus_magnuspinnatus
ENSPCAG00000011305	SND1	99	85.619	ENSPEMG00000010240	Snd1	100	85.714	Peromyscus_maniculatus_bairdii
ENSPCAG00000011305	SND1	97	64.859	ENSPMAG00000007915	-	99	64.746	Petromyzon_marinus
ENSPCAG00000011305	SND1	99	84.392	ENSPCIG00000011561	SND1	100	84.505	Phascolarctos_cinereus
ENSPCAG00000011305	SND1	100	73.684	ENSPFOG00000001557	snd1	99	74.416	Poecilia_formosa
ENSPCAG00000011305	SND1	100	73.684	ENSPLAG00000018459	snd1	96	74.416	Poecilia_latipinna
ENSPCAG00000011305	SND1	100	74.123	ENSPMEG00000006803	snd1	99	74.861	Poecilia_mexicana
ENSPCAG00000011305	SND1	100	74.013	ENSPREG00000002189	snd1	99	74.750	Poecilia_reticulata
ENSPCAG00000011305	SND1	92	90.244	ENSPPYG00000017972	SND1	100	90.244	Pongo_abelii
ENSPCAG00000011305	SND1	99	86.622	ENSPCOG00000026791	SND1	100	86.703	Propithecus_coquereli
ENSPCAG00000011305	SND1	99	87.068	ENSPVAG00000013945	SND1	100	87.143	Pteropus_vampyrus
ENSPCAG00000011305	SND1	99	73.516	ENSPNYG00000000932	snd1	99	74.276	Pundamilia_nyererei
ENSPCAG00000011305	SND1	100	73.414	ENSPNAG00000001206	snd1	98	74.111	Pygocentrus_nattereri
ENSPCAG00000011305	SND1	98	85.251	ENSRNOG00000031173	Snd1	99	85.284	Rattus_norvegicus
ENSPCAG00000011305	SND1	68	87.029	ENSRBIG00000027782	-	93	87.029	Rhinopithecus_bieti
ENSPCAG00000011305	SND1	99	86.734	ENSRROG00000033020	SND1	100	86.813	Rhinopithecus_roxellana
ENSPCAG00000011305	SND1	99	86.622	ENSSBOG00000032461	SND1	100	86.703	Saimiri_boliviensis_boliviensis
ENSPCAG00000011305	SND1	98	80.968	ENSSHAG00000015359	SND1	100	80.968	Sarcophilus_harrisii
ENSPCAG00000011305	SND1	100	72.797	ENSSFOG00015001103	snd1	98	73.807	Scleropages_formosus
ENSPCAG00000011305	SND1	98	73.937	ENSSMAG00000001932	snd1	93	73.719	Scophthalmus_maximus
ENSPCAG00000011305	SND1	100	73.684	ENSSDUG00000002699	snd1	94	73.684	Seriola_dumerili
ENSPCAG00000011305	SND1	100	70.833	ENSSLDG00000001950	snd1	100	70.833	Seriola_lalandi_dorsalis
ENSPCAG00000011305	SND1	86	97.170	ENSSARG00000004877	SND1	92	97.170	Sorex_araneus
ENSPCAG00000011305	SND1	68	94.444	ENSSPUG00000017586	SND1	97	94.444	Sphenodon_punctatus
ENSPCAG00000011305	SND1	76	68.761	ENSSPAG00000021398	snd1	96	70.332	Stegastes_partitus
ENSPCAG00000011305	SND1	99	86.622	ENSSSCG00000016590	SND1	100	86.703	Sus_scrofa
ENSPCAG00000011305	SND1	99	81.949	ENSTRUG00000014067	snd1	89	86.111	Takifugu_rubripes
ENSPCAG00000011305	SND1	99	73.678	ENSTNIG00000011019	snd1	100	73.246	Tetraodon_nigroviridis
ENSPCAG00000011305	SND1	93	91.392	ENSTBEG00000003999	SND1	100	91.392	Tupaia_belangeri
ENSPCAG00000011305	SND1	100	81.978	ENSTTRG00000006059	SND1	100	81.978	Tursiops_truncatus
ENSPCAG00000011305	SND1	86	86.312	ENSUAMG00000005604	-	93	86.312	Ursus_americanus
ENSPCAG00000011305	SND1	53	86.455	ENSUAMG00000002820	-	80	86.455	Ursus_americanus
ENSPCAG00000011305	SND1	100	86.484	ENSUMAG00000005960	SND1	100	86.484	Ursus_maritimus
ENSPCAG00000011305	SND1	73	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSPCAG00000011305	SND1	100	86.703	ENSVVUG00000007226	SND1	100	86.703	Vulpes_vulpes
ENSPCAG00000011305	SND1	97	74.576	ENSXETG00000023043	snd1	100	74.371	Xenopus_tropicalis
ENSPCAG00000011305	SND1	92	70.665	ENSXCOG00000013629	snd1	99	70.665	Xiphophorus_couchianus
ENSPCAG00000011305	SND1	100	74.232	ENSXMAG00000011469	snd1	99	74.972	Xiphophorus_maculatus