EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPCAG00000011541 (Gene tree)
Gene ID: -
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Procavia_capensis
Status: putative
Strand: Minus strand
Length: 8766 bases
Position: chrGeneScaffold_6071:10933-19698
Accession: 2324
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCAP00000011009	CPSF_A	PF03178.15	3.4e-78	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCAT00000011787	CPSF1-201	4125	-	ENSPCAP00000011009	1374 (aa)	-	UPI00018ADE27

Gene Model

Click here to download ENSPCAG00000011541's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCAG00000011541's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCAG00000011541	CPSF1	94	94.886	ENSG00000071894	CPSF1	91	94.886	Homo_sapiens
ENSPCAG00000011541	CPSF1	94	85.511	ENSAPOG00000019621	cpsf1	94	85.511	Acanthochromis_polyacanthus
ENSPCAG00000011541	CPSF1	94	89.419	ENSAMEG00000005557	CPSF1	94	89.419	Ailuropoda_melanoleuca
ENSPCAG00000011541	CPSF1	94	84.659	ENSACIG00000006112	cpsf1	92	84.659	Amphilophus_citrinellus
ENSPCAG00000011541	CPSF1	94	85.511	ENSAOCG00000007120	cpsf1	91	85.511	Amphiprion_ocellaris
ENSPCAG00000011541	CPSF1	94	85.511	ENSAPEG00000005755	cpsf1	91	85.511	Amphiprion_percula
ENSPCAG00000011541	CPSF1	93	85.227	ENSATEG00000011097	cpsf1	94	85.227	Anabas_testudineus
ENSPCAG00000011541	CPSF1	85	87.854	ENSACAG00000009655	CPSF1	90	87.854	Anolis_carolinensis
ENSPCAG00000011541	CPSF1	94	94.886	ENSANAG00000036514	CPSF1	91	94.886	Aotus_nancymaae
ENSPCAG00000011541	CPSF1	93	84.659	ENSACLG00000012231	cpsf1	93	84.659	Astatotilapia_calliptera
ENSPCAG00000011541	CPSF1	93	72.443	ENSAMXG00000008485	cpsf1	90	73.295	Astyanax_mexicanus
ENSPCAG00000011541	CPSF1	94	89.730	ENSBTAG00000008355	CPSF1	94	89.903	Bos_taurus
ENSPCAG00000011541	CPSF1	93	38.889	WBGene00022301	cpsf-1	100	38.873	Caenorhabditis_elegans
ENSPCAG00000011541	CPSF1	94	94.886	ENSCJAG00000021421	CPSF1	91	94.886	Callithrix_jacchus
ENSPCAG00000011541	CPSF1	94	95.455	ENSCAFG00000001600	CPSF1	94	95.455	Canis_familiaris
ENSPCAG00000011541	CPSF1	94	95.455	ENSCAFG00020020821	CPSF1	91	95.455	Canis_lupus_dingo
ENSPCAG00000011541	CPSF1	94	89.834	ENSCHIG00000015833	CPSF1	91	89.834	Capra_hircus
ENSPCAG00000011541	CPSF1	94	94.886	ENSTSYG00000028560	CPSF1	91	94.886	Carlito_syrichta
ENSPCAG00000011541	CPSF1	94	95.170	ENSCAPG00000014921	CPSF1	93	95.170	Cavia_aperea
ENSPCAG00000011541	CPSF1	94	95.170	ENSCPOG00000011448	CPSF1	91	95.170	Cavia_porcellus
ENSPCAG00000011541	CPSF1	94	94.886	ENSCCAG00000037658	CPSF1	91	94.886	Cebus_capucinus
ENSPCAG00000011541	CPSF1	94	94.886	ENSCATG00000037234	CPSF1	91	94.886	Cercocebus_atys
ENSPCAG00000011541	CPSF1	94	95.170	ENSCLAG00000012166	CPSF1	91	95.170	Chinchilla_lanigera
ENSPCAG00000011541	CPSF1	94	94.886	ENSCSAG00000008502	CPSF1	91	94.886	Chlorocebus_sabaeus
ENSPCAG00000011541	CPSF1	93	88.462	ENSCPBG00000018910	CPSF1	87	88.462	Chrysemys_picta_bellii
ENSPCAG00000011541	CPSF1	89	48.973	ENSCING00000000514	-	90	48.973	Ciona_intestinalis
ENSPCAG00000011541	CPSF1	93	48.864	ENSCSAVG00000002293	-	98	46.948	Ciona_savignyi
ENSPCAG00000011541	CPSF1	94	89.489	ENSCANG00000032760	CPSF1	100	84.259	Colobus_angolensis_palliatus
ENSPCAG00000011541	CPSF1	94	95.170	ENSCGRG00001016344	Cpsf1	91	95.170	Cricetulus_griseus_chok1gshd
ENSPCAG00000011541	CPSF1	94	95.170	ENSCGRG00000003118	Cpsf1	91	95.170	Cricetulus_griseus_crigri
ENSPCAG00000011541	CPSF1	94	82.955	ENSCSEG00000013464	cpsf1	94	82.955	Cynoglossus_semilaevis
ENSPCAG00000011541	CPSF1	82	82.670	ENSCVAG00000014059	cpsf1	100	71.296	Cyprinodon_variegatus
ENSPCAG00000011541	CPSF1	93	84.659	ENSDARG00000034178	cpsf1	91	84.659	Danio_rerio
ENSPCAG00000011541	CPSF1	94	94.886	ENSDORG00000006278	Cpsf1	93	94.886	Dipodomys_ordii
ENSPCAG00000011541	CPSF1	93	50.568	FBgn0024698	Cpsf160	90	50.568	Drosophila_melanogaster
ENSPCAG00000011541	CPSF1	79	91.275	ENSETEG00000006022	CPSF1	79	91.275	Echinops_telfairi
ENSPCAG00000011541	CPSF1	94	95.455	ENSEASG00005010774	CPSF1	91	95.455	Equus_asinus_asinus
ENSPCAG00000011541	CPSF1	94	95.455	ENSECAG00000022209	CPSF1	91	95.455	Equus_caballus
ENSPCAG00000011541	CPSF1	93	94.318	ENSEEUG00000000471	CPSF1	90	94.318	Erinaceus_europaeus
ENSPCAG00000011541	CPSF1	94	85.227	ENSELUG00000012271	cpsf1	94	85.227	Esox_lucius
ENSPCAG00000011541	CPSF1	94	95.170	ENSFDAG00000016060	CPSF1	91	95.170	Fukomys_damarensis
ENSPCAG00000011541	CPSF1	94	82.102	ENSFHEG00000016801	cpsf1	91	82.102	Fundulus_heteroclitus
ENSPCAG00000011541	CPSF1	94	83.239	ENSGMOG00000000796	cpsf1	91	83.239	Gadus_morhua
ENSPCAG00000011541	CPSF1	86	87.245	ENSGAFG00000018890	cpsf1	88	87.245	Gambusia_affinis
ENSPCAG00000011541	CPSF1	94	83.523	ENSGACG00000008703	cpsf1	92	83.523	Gasterosteus_aculeatus
ENSPCAG00000011541	CPSF1	94	82.310	ENSGAGG00000004276	CPSF1	91	92.179	Gopherus_agassizii
ENSPCAG00000011541	CPSF1	94	94.886	ENSGGOG00000016185	CPSF1	91	94.886	Gorilla_gorilla
ENSPCAG00000011541	CPSF1	94	84.659	ENSHBUG00000018900	cpsf1	91	84.659	Haplochromis_burtoni
ENSPCAG00000011541	CPSF1	94	95.170	ENSHGLG00000016139	CPSF1	91	95.170	Heterocephalus_glaber_female
ENSPCAG00000011541	CPSF1	94	95.170	ENSHGLG00100009750	CPSF1	91	95.170	Heterocephalus_glaber_male
ENSPCAG00000011541	CPSF1	93	84.091	ENSHCOG00000018509	cpsf1	90	84.091	Hippocampus_comes
ENSPCAG00000011541	CPSF1	93	74.788	ENSIPUG00000011259	cpsf1	91	74.788	Ictalurus_punctatus
ENSPCAG00000011541	CPSF1	94	95.170	ENSSTOG00000009957	CPSF1	93	95.170	Ictidomys_tridecemlineatus
ENSPCAG00000011541	CPSF1	94	94.602	ENSJJAG00000023002	Cpsf1	91	94.602	Jaculus_jaculus
ENSPCAG00000011541	CPSF1	90	82.759	ENSKMAG00000001940	cpsf1	96	82.759	Kryptolebias_marmoratus
ENSPCAG00000011541	CPSF1	94	84.659	ENSLBEG00000003601	cpsf1	91	84.659	Labrus_bergylta
ENSPCAG00000011541	CPSF1	78	85.795	ENSLACG00000000233	CPSF1	81	85.795	Latimeria_chalumnae
ENSPCAG00000011541	CPSF1	94	87.571	ENSLOCG00000008484	cpsf1	91	87.571	Lepisosteus_oculatus
ENSPCAG00000011541	CPSF1	94	94.886	ENSLAFG00000022601	CPSF1	94	94.886	Loxodonta_africana
ENSPCAG00000011541	CPSF1	94	94.886	ENSMFAG00000037013	CPSF1	91	94.886	Macaca_fascicularis
ENSPCAG00000011541	CPSF1	94	94.886	ENSMMUG00000007380	CPSF1	91	94.886	Macaca_mulatta
ENSPCAG00000011541	CPSF1	94	94.886	ENSMNEG00000043564	CPSF1	94	94.886	Macaca_nemestrina
ENSPCAG00000011541	CPSF1	94	94.886	ENSMLEG00000043010	CPSF1	91	94.886	Mandrillus_leucophaeus
ENSPCAG00000011541	CPSF1	93	85.511	ENSMAMG00000003803	cpsf1	94	85.511	Mastacembelus_armatus
ENSPCAG00000011541	CPSF1	93	84.659	ENSMZEG00005001168	cpsf1	91	84.659	Maylandia_zebra
ENSPCAG00000011541	CPSF1	94	95.170	ENSMAUG00000003601	Cpsf1	91	95.170	Mesocricetus_auratus
ENSPCAG00000011541	CPSF1	94	95.170	ENSMICG00000015767	CPSF1	91	95.170	Microcebus_murinus
ENSPCAG00000011541	CPSF1	94	95.455	ENSMOCG00000022758	Cpsf1	91	95.455	Microtus_ochrogaster
ENSPCAG00000011541	CPSF1	94	84.375	ENSMMOG00000021245	cpsf1	91	84.375	Mola_mola
ENSPCAG00000011541	CPSF1	94	94.602	ENSMODG00000010755	CPSF1	91	94.602	Monodelphis_domestica
ENSPCAG00000011541	CPSF1	94	85.227	ENSMALG00000020545	cpsf1	91	85.227	Monopterus_albus
ENSPCAG00000011541	CPSF1	94	95.170	MGP_CAROLIEiJ_G0019936	Cpsf1	91	95.170	Mus_caroli
ENSPCAG00000011541	CPSF1	94	95.170	ENSMUSG00000034022	Cpsf1	91	95.170	Mus_musculus
ENSPCAG00000011541	CPSF1	94	95.170	MGP_PahariEiJ_G0019946	Cpsf1	91	95.170	Mus_pahari
ENSPCAG00000011541	CPSF1	94	95.170	MGP_SPRETEiJ_G0020839	Cpsf1	91	95.170	Mus_spretus
ENSPCAG00000011541	CPSF1	91	94.379	ENSMPUG00000006419	CPSF1	88	94.379	Mustela_putorius_furo
ENSPCAG00000011541	CPSF1	94	95.170	ENSNGAG00000022460	Cpsf1	91	95.170	Nannospalax_galili
ENSPCAG00000011541	CPSF1	93	84.659	ENSNBRG00000000813	cpsf1	90	84.659	Neolamprologus_brichardi
ENSPCAG00000011541	CPSF1	85	80.168	ENSNLEG00000010633	-	100	83.796	Nomascus_leucogenys
ENSPCAG00000011541	CPSF1	81	91.279	ENSMEUG00000014922	CPSF1	81	91.279	Notamacropus_eugenii
ENSPCAG00000011541	CPSF1	56	96.330	ENSOPRG00000004693	-	64	96.330	Ochotona_princeps
ENSPCAG00000011541	CPSF1	94	95.170	ENSODEG00000013995	CPSF1	91	95.170	Octodon_degus
ENSPCAG00000011541	CPSF1	94	84.375	ENSONIG00000007676	cpsf1	91	84.375	Oreochromis_niloticus
ENSPCAG00000011541	CPSF1	59	85.714	ENSOANG00000010716	CPSF1	87	85.714	Ornithorhynchus_anatinus
ENSPCAG00000011541	CPSF1	93	83.523	ENSORLG00000013544	cpsf1	91	83.523	Oryzias_latipes
ENSPCAG00000011541	CPSF1	93	83.523	ENSORLG00020021693	cpsf1	91	83.523	Oryzias_latipes_hni
ENSPCAG00000011541	CPSF1	93	83.523	ENSORLG00015009979	cpsf1	91	83.523	Oryzias_latipes_hsok
ENSPCAG00000011541	CPSF1	93	82.955	ENSOMEG00000011849	cpsf1	91	82.955	Oryzias_melastigma
ENSPCAG00000011541	CPSF1	94	95.170	ENSOGAG00000000315	CPSF1	91	95.170	Otolemur_garnettii
ENSPCAG00000011541	CPSF1	94	95.129	ENSPPAG00000019280	CPSF1	92	95.129	Pan_paniscus
ENSPCAG00000011541	CPSF1	94	94.886	ENSPTRG00000051253	-	100	86.364	Pan_troglodytes
ENSPCAG00000011541	CPSF1	94	94.886	ENSPTRG00000049288	-	100	86.364	Pan_troglodytes
ENSPCAG00000011541	CPSF1	94	94.886	ENSPANG00000015005	CPSF1	94	94.886	Papio_anubis
ENSPCAG00000011541	CPSF1	93	85.795	ENSPKIG00000002582	cpsf1	94	85.795	Paramormyrops_kingsleyae
ENSPCAG00000011541	CPSF1	94	94.602	ENSPCIG00000009035	CPSF1	91	94.602	Phascolarctos_cinereus
ENSPCAG00000011541	CPSF1	94	83.239	ENSPFOG00000012870	cpsf1	91	83.239	Poecilia_formosa
ENSPCAG00000011541	CPSF1	94	82.955	ENSPREG00000016307	cpsf1	91	82.955	Poecilia_reticulata
ENSPCAG00000011541	CPSF1	93	93.466	ENSPPYG00000018973	CPSF1	92	93.466	Pongo_abelii
ENSPCAG00000011541	CPSF1	94	89.523	ENSPCOG00000020001	CPSF1	100	84.259	Propithecus_coquereli
ENSPCAG00000011541	CPSF1	90	95.614	ENSPVAG00000006761	CPSF1	87	95.614	Pteropus_vampyrus
ENSPCAG00000011541	CPSF1	94	84.659	ENSPNYG00000004906	cpsf1	93	84.659	Pundamilia_nyererei
ENSPCAG00000011541	CPSF1	93	76.420	ENSPNAG00000024395	cpsf1	91	76.420	Pygocentrus_nattereri
ENSPCAG00000011541	CPSF1	94	95.170	ENSRNOG00000030705	Cpsf1	91	95.170	Rattus_norvegicus
ENSPCAG00000011541	CPSF1	94	94.886	ENSRBIG00000044907	CPSF1	91	94.886	Rhinopithecus_bieti
ENSPCAG00000011541	CPSF1	94	94.886	ENSRROG00000044861	CPSF1	91	94.886	Rhinopithecus_roxellana
ENSPCAG00000011541	CPSF1	94	94.886	ENSSBOG00000027177	CPSF1	94	94.886	Saimiri_boliviensis_boliviensis
ENSPCAG00000011541	CPSF1	94	94.318	ENSSHAG00000006500	CPSF1	91	94.318	Sarcophilus_harrisii
ENSPCAG00000011541	CPSF1	93	85.795	ENSSFOG00015004606	cpsf1	94	85.795	Scleropages_formosus
ENSPCAG00000011541	CPSF1	94	85.511	ENSSMAG00000020547	cpsf1	91	85.511	Scophthalmus_maximus
ENSPCAG00000011541	CPSF1	93	84.943	ENSSDUG00000001100	cpsf1	91	84.943	Seriola_dumerili
ENSPCAG00000011541	CPSF1	93	84.943	ENSSLDG00000003619	cpsf1	91	84.943	Seriola_lalandi_dorsalis
ENSPCAG00000011541	CPSF1	82	94.444	ENSSARG00000003643	CPSF1	83	94.444	Sorex_araneus
ENSPCAG00000011541	CPSF1	93	88.920	ENSSPUG00000014396	CPSF1	94	88.920	Sphenodon_punctatus
ENSPCAG00000011541	CPSF1	94	84.943	ENSSPAG00000005349	cpsf1	91	84.943	Stegastes_partitus
ENSPCAG00000011541	CPSF1	94	94.886	ENSSSCG00000005906	CPSF1	91	94.886	Sus_scrofa
ENSPCAG00000011541	CPSF1	93	82.670	ENSTRUG00000013134	cpsf1	94	82.670	Takifugu_rubripes
ENSPCAG00000011541	CPSF1	94	82.486	ENSTNIG00000014027	cpsf1	91	82.486	Tetraodon_nigroviridis
ENSPCAG00000011541	CPSF1	71	95.312	ENSTBEG00000001756	CPSF1	83	95.312	Tupaia_belangeri
ENSPCAG00000011541	CPSF1	83	95.170	ENSTTRG00000001937	CPSF1	81	95.170	Tursiops_truncatus
ENSPCAG00000011541	CPSF1	94	95.455	ENSUAMG00000006476	CPSF1	92	95.455	Ursus_americanus
ENSPCAG00000011541	CPSF1	93	82.955	ENSXCOG00000003608	cpsf1	90	82.955	Xiphophorus_couchianus
ENSPCAG00000011541	CPSF1	93	83.239	ENSXMAG00000005798	cpsf1	90	83.239	Xiphophorus_maculatus