EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPCAG00000012962 (Gene tree)
Gene ID: -
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Procavia_capensis
Status: putative
Strand: Plus strand
Length: 33370 bases
Position: chrGeneScaffold_31:447-33816
Accession: 9962
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCAP00000012158	UPF1_Zn_bind	PF09416.10	1.7e-72	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCAT00000013015	UPF1-201	3348	-	ENSPCAP00000012158	1115 (aa)	-	UPI00018ADE80

Gene Model

Click here to download ENSPCAG00000012962's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCAG00000012962's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCAG00000012962	UPF1	76	100.000	ENSG00000005007	UPF1	76	100.000	Homo_sapiens
ENSPCAG00000012962	UPF1	76	98.653	ENSAPOG00000010916	-	75	98.653	Acanthochromis_polyacanthus
ENSPCAG00000012962	UPF1	76	98.990	ENSAPOG00000023773	upf1	76	98.990	Acanthochromis_polyacanthus
ENSPCAG00000012962	UPF1	76	100.000	ENSAMEG00000011474	UPF1	76	100.000	Ailuropoda_melanoleuca
ENSPCAG00000012962	UPF1	65	98.851	ENSACIG00000010985	-	71	98.851	Amphilophus_citrinellus
ENSPCAG00000012962	UPF1	76	98.990	ENSACIG00000019949	upf1	75	98.990	Amphilophus_citrinellus
ENSPCAG00000012962	UPF1	76	98.990	ENSAOCG00000018519	upf1	76	98.990	Amphiprion_ocellaris
ENSPCAG00000012962	UPF1	76	98.653	ENSAOCG00000006352	-	75	98.653	Amphiprion_ocellaris
ENSPCAG00000012962	UPF1	76	98.653	ENSAPEG00000006292	-	75	98.653	Amphiprion_percula
ENSPCAG00000012962	UPF1	76	98.990	ENSAPEG00000016344	upf1	76	98.990	Amphiprion_percula
ENSPCAG00000012962	UPF1	76	98.653	ENSATEG00000016606	-	75	98.653	Anabas_testudineus
ENSPCAG00000012962	UPF1	76	98.990	ENSATEG00000017867	upf1	76	98.990	Anabas_testudineus
ENSPCAG00000012962	UPF1	65	100.000	ENSAPLG00000009175	UPF1	70	100.000	Anas_platyrhynchos
ENSPCAG00000012962	UPF1	65	100.000	ENSANAG00000024107	UPF1	67	100.000	Aotus_nancymaae
ENSPCAG00000012962	UPF1	76	98.653	ENSACLG00000022630	-	75	98.653	Astatotilapia_calliptera
ENSPCAG00000012962	UPF1	76	98.990	ENSACLG00000007181	upf1	75	98.990	Astatotilapia_calliptera
ENSPCAG00000012962	UPF1	76	98.990	ENSAMXG00000042187	upf1	75	98.990	Astyanax_mexicanus
ENSPCAG00000012962	UPF1	76	100.000	ENSBTAG00000020922	UPF1	76	100.000	Bos_taurus
ENSPCAG00000012962	UPF1	50	69.492	WBGene00004880	smg-2	52	69.492	Caenorhabditis_elegans
ENSPCAG00000012962	UPF1	76	100.000	ENSCJAG00000019627	UPF1	76	100.000	Callithrix_jacchus
ENSPCAG00000012962	UPF1	76	100.000	ENSCAFG00000014578	UPF1	76	100.000	Canis_familiaris
ENSPCAG00000012962	UPF1	76	100.000	ENSCAFG00020012347	UPF1	76	100.000	Canis_lupus_dingo
ENSPCAG00000012962	UPF1	76	100.000	ENSCHIG00000011018	UPF1	76	100.000	Capra_hircus
ENSPCAG00000012962	UPF1	65	100.000	ENSTSYG00000008877	UPF1	68	100.000	Carlito_syrichta
ENSPCAG00000012962	UPF1	65	100.000	ENSCAPG00000005758	UPF1	67	100.000	Cavia_aperea
ENSPCAG00000012962	UPF1	76	100.000	ENSCPOG00000025463	UPF1	76	100.000	Cavia_porcellus
ENSPCAG00000012962	UPF1	76	100.000	ENSCCAG00000032175	UPF1	76	100.000	Cebus_capucinus
ENSPCAG00000012962	UPF1	65	100.000	ENSCATG00000040306	UPF1	68	100.000	Cercocebus_atys
ENSPCAG00000012962	UPF1	72	100.000	ENSCLAG00000004037	UPF1	72	100.000	Chinchilla_lanigera
ENSPCAG00000012962	UPF1	76	100.000	ENSCSAG00000005276	UPF1	76	100.000	Chlorocebus_sabaeus
ENSPCAG00000012962	UPF1	76	100.000	ENSCPBG00000012513	UPF1	75	100.000	Chrysemys_picta_bellii
ENSPCAG00000012962	UPF1	54	88.889	ENSCING00000021399	-	72	88.889	Ciona_intestinalis
ENSPCAG00000012962	UPF1	68	89.226	ENSCSAVG00000006533	-	70	89.226	Ciona_savignyi
ENSPCAG00000012962	UPF1	65	100.000	ENSCANG00000029819	UPF1	68	100.000	Colobus_angolensis_palliatus
ENSPCAG00000012962	UPF1	76	100.000	ENSCGRG00001021067	Upf1	76	100.000	Cricetulus_griseus_chok1gshd
ENSPCAG00000012962	UPF1	65	100.000	ENSCGRG00000013480	Upf1	69	100.000	Cricetulus_griseus_crigri
ENSPCAG00000012962	UPF1	69	97.701	ENSCSEG00000017239	upf1	70	97.701	Cynoglossus_semilaevis
ENSPCAG00000012962	UPF1	76	98.653	ENSCSEG00000016159	-	75	98.653	Cynoglossus_semilaevis
ENSPCAG00000012962	UPF1	76	98.653	ENSCVAG00000010561	upf1	75	98.653	Cyprinodon_variegatus
ENSPCAG00000012962	UPF1	76	98.990	ENSDARG00000016302	upf1	75	98.990	Danio_rerio
ENSPCAG00000012962	UPF1	65	100.000	ENSDORG00000009984	Upf1	67	100.000	Dipodomys_ordii
ENSPCAG00000012962	UPF1	54	83.729	FBgn0030354	Upf1	51	83.729	Drosophila_melanogaster
ENSPCAG00000012962	UPF1	76	100.000	ENSEASG00005006549	UPF1	76	100.000	Equus_asinus_asinus
ENSPCAG00000012962	UPF1	76	100.000	ENSECAG00000010639	UPF1	76	100.000	Equus_caballus
ENSPCAG00000012962	UPF1	76	98.990	ENSELUG00000012916	-	75	98.990	Esox_lucius
ENSPCAG00000012962	UPF1	76	97.980	ENSELUG00000020917	upf1	75	97.980	Esox_lucius
ENSPCAG00000012962	UPF1	76	100.000	ENSFCAG00000009757	UPF1	76	100.000	Felis_catus
ENSPCAG00000012962	UPF1	65	99.664	ENSFALG00000009312	UPF1	67	99.664	Ficedula_albicollis
ENSPCAG00000012962	UPF1	65	100.000	ENSFDAG00000014816	UPF1	70	100.000	Fukomys_damarensis
ENSPCAG00000012962	UPF1	68	97.643	ENSFHEG00000006428	upf1	70	97.643	Fundulus_heteroclitus
ENSPCAG00000012962	UPF1	65	98.653	ENSFHEG00000016276	-	73	98.653	Fundulus_heteroclitus
ENSPCAG00000012962	UPF1	76	98.316	ENSGMOG00000007541	upf1	75	98.316	Gadus_morhua
ENSPCAG00000012962	UPF1	76	100.000	ENSGALG00000003220	UPF1	76	100.000	Gallus_gallus
ENSPCAG00000012962	UPF1	76	98.653	ENSGAFG00000004831	upf1	75	98.653	Gambusia_affinis
ENSPCAG00000012962	UPF1	76	100.000	ENSGAGG00000022217	UPF1	76	100.000	Gopherus_agassizii
ENSPCAG00000012962	UPF1	65	100.000	ENSGGOG00000002608	UPF1	69	100.000	Gorilla_gorilla
ENSPCAG00000012962	UPF1	59	98.990	ENSHBUG00000014694	upf1	67	98.990	Haplochromis_burtoni
ENSPCAG00000012962	UPF1	64	98.653	ENSHBUG00000008939	upf1	70	98.653	Haplochromis_burtoni
ENSPCAG00000012962	UPF1	76	100.000	ENSHGLG00000010900	UPF1	77	100.000	Heterocephalus_glaber_female
ENSPCAG00000012962	UPF1	65	100.000	ENSHGLG00100005904	UPF1	70	100.000	Heterocephalus_glaber_male
ENSPCAG00000012962	UPF1	76	98.653	ENSHCOG00000008918	upf1	75	98.653	Hippocampus_comes
ENSPCAG00000012962	UPF1	76	98.990	ENSIPUG00000005108	UPF1	75	98.990	Ictalurus_punctatus
ENSPCAG00000012962	UPF1	76	100.000	ENSSTOG00000009196	UPF1	76	100.000	Ictidomys_tridecemlineatus
ENSPCAG00000012962	UPF1	76	100.000	ENSJJAG00000023151	Upf1	76	100.000	Jaculus_jaculus
ENSPCAG00000012962	UPF1	68	98.653	ENSKMAG00000004962	upf1	70	98.653	Kryptolebias_marmoratus
ENSPCAG00000012962	UPF1	69	98.653	ENSLBEG00000027848	-	70	98.653	Labrus_bergylta
ENSPCAG00000012962	UPF1	76	98.990	ENSLBEG00000014862	upf1	76	98.990	Labrus_bergylta
ENSPCAG00000012962	UPF1	76	99.663	ENSLOCG00000002072	upf1	76	99.663	Lepisosteus_oculatus
ENSPCAG00000012962	UPF1	76	100.000	ENSLAFG00000014963	UPF1	76	100.000	Loxodonta_africana
ENSPCAG00000012962	UPF1	76	100.000	ENSMFAG00000037748	UPF1	76	100.000	Macaca_fascicularis
ENSPCAG00000012962	UPF1	76	100.000	ENSMMUG00000023286	UPF1	76	100.000	Macaca_mulatta
ENSPCAG00000012962	UPF1	76	100.000	ENSMNEG00000000046	UPF1	76	100.000	Macaca_nemestrina
ENSPCAG00000012962	UPF1	65	100.000	ENSMLEG00000028404	UPF1	70	100.000	Mandrillus_leucophaeus
ENSPCAG00000012962	UPF1	76	98.653	ENSMAMG00000006229	upf1	76	98.653	Mastacembelus_armatus
ENSPCAG00000012962	UPF1	76	98.316	ENSMAMG00000006231	-	75	98.316	Mastacembelus_armatus
ENSPCAG00000012962	UPF1	76	98.990	ENSMZEG00005003489	upf1	76	98.990	Maylandia_zebra
ENSPCAG00000012962	UPF1	76	98.653	ENSMZEG00005016386	-	75	98.653	Maylandia_zebra
ENSPCAG00000012962	UPF1	65	98.322	ENSMGAG00000004745	UPF1	70	98.322	Meleagris_gallopavo
ENSPCAG00000012962	UPF1	65	100.000	ENSMAUG00000011398	Upf1	66	100.000	Mesocricetus_auratus
ENSPCAG00000012962	UPF1	76	100.000	ENSMICG00000001659	UPF1	77	100.000	Microcebus_murinus
ENSPCAG00000012962	UPF1	76	100.000	ENSMOCG00000005699	Upf1	76	100.000	Microtus_ochrogaster
ENSPCAG00000012962	UPF1	68	98.316	ENSMMOG00000007881	upf1	70	98.316	Mola_mola
ENSPCAG00000012962	UPF1	65	98.467	ENSMMOG00000007537	-	71	98.467	Mola_mola
ENSPCAG00000012962	UPF1	76	100.000	ENSMODG00000003689	UPF1	76	100.000	Monodelphis_domestica
ENSPCAG00000012962	UPF1	76	97.306	ENSMALG00000000144	upf1	75	97.306	Monopterus_albus
ENSPCAG00000012962	UPF1	75	97.980	ENSMALG00000018100	-	75	97.980	Monopterus_albus
ENSPCAG00000012962	UPF1	76	100.000	MGP_CAROLIEiJ_G0031142	Upf1	76	100.000	Mus_caroli
ENSPCAG00000012962	UPF1	76	100.000	ENSMUSG00000058301	Upf1	76	100.000	Mus_musculus
ENSPCAG00000012962	UPF1	76	100.000	MGP_PahariEiJ_G0021607	Upf1	76	100.000	Mus_pahari
ENSPCAG00000012962	UPF1	76	100.000	MGP_SPRETEiJ_G0032260	Upf1	76	100.000	Mus_spretus
ENSPCAG00000012962	UPF1	76	100.000	ENSMPUG00000015516	UPF1	76	100.000	Mustela_putorius_furo
ENSPCAG00000012962	UPF1	75	100.000	ENSMLUG00000012122	UPF1	75	100.000	Myotis_lucifugus
ENSPCAG00000012962	UPF1	76	100.000	ENSNGAG00000024107	Upf1	76	100.000	Nannospalax_galili
ENSPCAG00000012962	UPF1	76	98.653	ENSNBRG00000022069	-	76	98.653	Neolamprologus_brichardi
ENSPCAG00000012962	UPF1	76	98.990	ENSNBRG00000000670	upf1	76	98.990	Neolamprologus_brichardi
ENSPCAG00000012962	UPF1	64	100.000	ENSNLEG00000006062	UPF1	67	100.000	Nomascus_leucogenys
ENSPCAG00000012962	UPF1	63	100.000	ENSMEUG00000014146	-	63	100.000	Notamacropus_eugenii
ENSPCAG00000012962	UPF1	59	99.663	ENSOPRG00000014018	UPF1	64	99.663	Ochotona_princeps
ENSPCAG00000012962	UPF1	76	100.000	ENSODEG00000012426	UPF1	76	100.000	Octodon_degus
ENSPCAG00000012962	UPF1	76	98.990	ENSONIG00000010452	upf1	76	98.990	Oreochromis_niloticus
ENSPCAG00000012962	UPF1	76	98.653	ENSONIG00000012729	-	75	98.653	Oreochromis_niloticus
ENSPCAG00000012962	UPF1	76	99.331	ENSOANG00000004568	UPF1	76	99.331	Ornithorhynchus_anatinus
ENSPCAG00000012962	UPF1	76	98.653	ENSORLG00000008453	upf1	75	98.653	Oryzias_latipes
ENSPCAG00000012962	UPF1	76	98.653	ENSORLG00020014758	upf1	75	98.653	Oryzias_latipes_hni
ENSPCAG00000012962	UPF1	76	98.653	ENSORLG00015010165	upf1	75	98.653	Oryzias_latipes_hsok
ENSPCAG00000012962	UPF1	76	98.653	ENSOMEG00000003665	upf1	75	98.653	Oryzias_melastigma
ENSPCAG00000012962	UPF1	76	100.000	ENSOGAG00000012866	UPF1	76	100.000	Otolemur_garnettii
ENSPCAG00000012962	UPF1	72	100.000	ENSOARG00000010739	UPF1	75	100.000	Ovis_aries
ENSPCAG00000012962	UPF1	65	100.000	ENSPPAG00000043884	UPF1	67	100.000	Pan_paniscus
ENSPCAG00000012962	UPF1	76	100.000	ENSPPRG00000023470	UPF1	76	100.000	Panthera_pardus
ENSPCAG00000012962	UPF1	65	100.000	ENSPTIG00000010159	UPF1	71	100.000	Panthera_tigris_altaica
ENSPCAG00000012962	UPF1	76	100.000	ENSPTRG00000010721	UPF1	76	100.000	Pan_troglodytes
ENSPCAG00000012962	UPF1	76	100.000	ENSPANG00000008847	UPF1	76	100.000	Papio_anubis
ENSPCAG00000012962	UPF1	70	100.000	ENSPKIG00000006069	upf1	74	100.000	Paramormyrops_kingsleyae
ENSPCAG00000012962	UPF1	68	97.980	ENSPMGG00000017327	upf1	70	97.980	Periophthalmus_magnuspinnatus
ENSPCAG00000012962	UPF1	76	100.000	ENSPEMG00000001085	Upf1	76	100.000	Peromyscus_maniculatus_bairdii
ENSPCAG00000012962	UPF1	76	95.960	ENSPMAG00000001206	upf1	70	95.960	Petromyzon_marinus
ENSPCAG00000012962	UPF1	76	100.000	ENSPCIG00000006156	UPF1	76	100.000	Phascolarctos_cinereus
ENSPCAG00000012962	UPF1	76	98.653	ENSPLAG00000016232	-	75	98.653	Poecilia_latipinna
ENSPCAG00000012962	UPF1	69	98.316	ENSPLAG00000018155	-	70	98.316	Poecilia_latipinna
ENSPCAG00000012962	UPF1	69	98.316	ENSPMEG00000011443	-	70	98.316	Poecilia_mexicana
ENSPCAG00000012962	UPF1	76	98.653	ENSPMEG00000016319	-	75	98.653	Poecilia_mexicana
ENSPCAG00000012962	UPF1	76	98.653	ENSPREG00000011247	-	75	98.653	Poecilia_reticulata
ENSPCAG00000012962	UPF1	69	98.653	ENSPREG00000009940	upf1	70	98.653	Poecilia_reticulata
ENSPCAG00000012962	UPF1	76	91.515	ENSPPYG00000009752	UPF1	75	91.515	Pongo_abelii
ENSPCAG00000012962	UPF1	76	100.000	ENSPCOG00000023813	UPF1	76	100.000	Propithecus_coquereli
ENSPCAG00000012962	UPF1	52	100.000	ENSPVAG00000003183	UPF1	52	100.000	Pteropus_vampyrus
ENSPCAG00000012962	UPF1	76	98.653	ENSPNYG00000016731	-	75	98.653	Pundamilia_nyererei
ENSPCAG00000012962	UPF1	76	98.990	ENSPNYG00000003694	upf1	76	98.990	Pundamilia_nyererei
ENSPCAG00000012962	UPF1	76	98.990	ENSPNAG00000025614	upf1	75	98.990	Pygocentrus_nattereri
ENSPCAG00000012962	UPF1	76	100.000	ENSRNOG00000020134	Upf1	76	100.000	Rattus_norvegicus
ENSPCAG00000012962	UPF1	63	100.000	ENSRBIG00000013894	UPF1	69	100.000	Rhinopithecus_bieti
ENSPCAG00000012962	UPF1	65	100.000	ENSRROG00000040935	UPF1	69	100.000	Rhinopithecus_roxellana
ENSPCAG00000012962	UPF1	50	66.102	YMR080C	NAM7	57	66.102	Saccharomyces_cerevisiae
ENSPCAG00000012962	UPF1	65	100.000	ENSSBOG00000023632	UPF1	67	100.000	Saimiri_boliviensis_boliviensis
ENSPCAG00000012962	UPF1	65	99.331	ENSSHAG00000010499	UPF1	70	99.331	Sarcophilus_harrisii
ENSPCAG00000012962	UPF1	76	99.663	ENSSFOG00015021095	upf1	75	99.663	Scleropages_formosus
ENSPCAG00000012962	UPF1	76	98.653	ENSSMAG00000021018	-	75	98.653	Scophthalmus_maximus
ENSPCAG00000012962	UPF1	76	98.316	ENSSMAG00000005055	upf1	76	98.316	Scophthalmus_maximus
ENSPCAG00000012962	UPF1	76	98.653	ENSSDUG00000009629	-	75	98.653	Seriola_dumerili
ENSPCAG00000012962	UPF1	76	98.990	ENSSDUG00000013320	upf1	76	98.990	Seriola_dumerili
ENSPCAG00000012962	UPF1	76	98.653	ENSSLDG00000006878	-	75	98.653	Seriola_lalandi_dorsalis
ENSPCAG00000012962	UPF1	76	98.990	ENSSLDG00000020868	upf1	75	98.990	Seriola_lalandi_dorsalis
ENSPCAG00000012962	UPF1	76	100.000	ENSSPUG00000010538	UPF1	76	100.000	Sphenodon_punctatus
ENSPCAG00000012962	UPF1	66	98.990	ENSSPAG00000000003	upf1	69	98.990	Stegastes_partitus
ENSPCAG00000012962	UPF1	68	98.653	ENSSPAG00000011521	-	70	98.653	Stegastes_partitus
ENSPCAG00000012962	UPF1	76	100.000	ENSSSCG00000039301	UPF1	76	100.000	Sus_scrofa
ENSPCAG00000012962	UPF1	61	81.940	ENSTGUG00000001057	UPF1	73	100.000	Taeniopygia_guttata
ENSPCAG00000012962	UPF1	76	97.980	ENSTRUG00000005131	-	75	97.980	Takifugu_rubripes
ENSPCAG00000012962	UPF1	76	98.990	ENSTRUG00000000150	upf1	76	98.990	Takifugu_rubripes
ENSPCAG00000012962	UPF1	76	100.000	ENSTTRG00000011544	UPF1	69	100.000	Tursiops_truncatus
ENSPCAG00000012962	UPF1	76	100.000	ENSUAMG00000007093	UPF1	76	100.000	Ursus_americanus
ENSPCAG00000012962	UPF1	65	100.000	ENSUMAG00000006652	UPF1	72	100.000	Ursus_maritimus
ENSPCAG00000012962	UPF1	76	100.000	ENSVVUG00000007797	UPF1	76	100.000	Vulpes_vulpes
ENSPCAG00000012962	UPF1	66	100.000	ENSXETG00000013602	upf1	68	100.000	Xenopus_tropicalis
ENSPCAG00000012962	UPF1	72	98.653	ENSXCOG00000015275	-	71	98.653	Xiphophorus_couchianus
ENSPCAG00000012962	UPF1	65	98.653	ENSXCOG00000005764	-	70	98.653	Xiphophorus_couchianus
ENSPCAG00000012962	UPF1	76	98.653	ENSXMAG00000002540	-	75	98.653	Xiphophorus_maculatus
ENSPCAG00000012962	UPF1	76	98.653	ENSXMAG00000001703	-	75	98.653	Xiphophorus_maculatus