EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPCAG00000013124 (Gene tree)
Gene ID: -
Gene Symbol: UPF3A
Alias: HUPF3A|RENT3A|UPF3
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Procavia_capensis
Status: putative
Strand: Plus strand
Length: 21737 bases
Position: chrGeneScaffold_5727:2805-24541
Accession: 20332
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCAP00000012278	Smg4_UPF3	PF03467.15	1.2e-27	1	2
ENSPCAP00000012278	Smg4_UPF3	PF03467.15	1.2e-27	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCAT00000013140	UPF3A-201	1431	-	ENSPCAP00000012278	476 (aa)	-	UPI00018AD95D

Gene Model

Click here to download ENSPCAG00000013124's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCAG00000013124's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCAG00000013124	UPF3A	51	52.964	ENSG00000125351	UPF3B	76	51.829	Homo_sapiens
ENSPCAG00000013124	UPF3A	79	69.912	ENSG00000169062	UPF3A	99	72.222	Homo_sapiens
ENSPCAG00000013124	UPF3A	50	47.200	ENSAPOG00000012775	upf3b	54	52.800	Acanthochromis_polyacanthus
ENSPCAG00000013124	UPF3A	56	50.000	ENSAMEG00000000163	UPF3B	53	52.964	Ailuropoda_melanoleuca
ENSPCAG00000013124	UPF3A	65	69.132	ENSAMEG00000004259	UPF3A	67	68.167	Ailuropoda_melanoleuca
ENSPCAG00000013124	UPF3A	50	48.193	ENSAOCG00000000706	upf3b	54	52.610	Amphiprion_ocellaris
ENSPCAG00000013124	UPF3A	50	47.600	ENSAPEG00000005545	upf3b	54	53.200	Amphiprion_percula
ENSPCAG00000013124	UPF3A	66	55.238	ENSATEG00000005843	upf3a	56	61.868	Anabas_testudineus
ENSPCAG00000013124	UPF3A	56	71.053	ENSACAG00000001540	UPF3A	64	71.053	Anolis_carolinensis
ENSPCAG00000013124	UPF3A	51	52.964	ENSANAG00000021894	-	77	51.515	Aotus_nancymaae
ENSPCAG00000013124	UPF3A	70	67.847	ENSANAG00000021713	UPF3A	70	67.552	Aotus_nancymaae
ENSPCAG00000013124	UPF3A	51	44.082	ENSANAG00000025598	-	52	46.559	Aotus_nancymaae
ENSPCAG00000013124	UPF3A	67	70.533	ENSCJAG00000019102	UPF3A	71	69.322	Callithrix_jacchus
ENSPCAG00000013124	UPF3A	51	52.964	ENSCJAG00000004975	UPF3B	77	51.515	Callithrix_jacchus
ENSPCAG00000013124	UPF3A	51	52.964	ENSCAFG00000018426	UPF3B	54	52.964	Canis_familiaris
ENSPCAG00000013124	UPF3A	69	69.162	ENSCAFG00000006504	UPF3A	71	68.263	Canis_familiaris
ENSPCAG00000013124	UPF3A	69	69.162	ENSCAFG00020014268	UPF3A	69	67.964	Canis_lupus_dingo
ENSPCAG00000013124	UPF3A	51	44.082	ENSCAFG00020004074	UPF3B	53	49.407	Canis_lupus_dingo
ENSPCAG00000013124	UPF3A	68	65.325	ENSCHIG00000008682	UPF3A	66	64.602	Capra_hircus
ENSPCAG00000013124	UPF3A	70	63.127	ENSCPOG00000006824	UPF3A	77	63.127	Cavia_porcellus
ENSPCAG00000013124	UPF3A	70	69.617	ENSCCAG00000018406	UPF3A	80	69.322	Cebus_capucinus
ENSPCAG00000013124	UPF3A	79	69.027	ENSCATG00000029733	UPF3A	78	68.732	Cercocebus_atys
ENSPCAG00000013124	UPF3A	51	52.964	ENSCATG00000017506	UPF3B	77	51.515	Cercocebus_atys
ENSPCAG00000013124	UPF3A	56	50.000	ENSCLAG00000003260	UPF3B	53	53.360	Chinchilla_lanigera
ENSPCAG00000013124	UPF3A	79	68.421	ENSCSAG00000017388	UPF3A	79	68.129	Chlorocebus_sabaeus
ENSPCAG00000013124	UPF3A	54	42.857	ENSCGRG00001013643	-	65	47.541	Cricetulus_griseus_chok1gshd
ENSPCAG00000013124	UPF3A	66	66.250	ENSCGRG00001017387	Upf3a	74	65.312	Cricetulus_griseus_chok1gshd
ENSPCAG00000013124	UPF3A	54	50.554	ENSCGRG00001006858	-	51	53.279	Cricetulus_griseus_chok1gshd
ENSPCAG00000013124	UPF3A	65	66.349	ENSCGRG00000001468	Upf3a	73	65.397	Cricetulus_griseus_crigri
ENSPCAG00000013124	UPF3A	51	49.802	ENSCSEG00000002046	upf3b	52	51.600	Cynoglossus_semilaevis
ENSPCAG00000013124	UPF3A	54	61.923	ENSCSEG00000005106	upf3a	56	62.257	Cynoglossus_semilaevis
ENSPCAG00000013124	UPF3A	58	59.567	ENSCVAG00000022333	upf3a	55	61.868	Cyprinodon_variegatus
ENSPCAG00000013124	UPF3A	50	51.600	ENSDARG00000000489	upf3b	54	52.549	Danio_rerio
ENSPCAG00000013124	UPF3A	70	72.206	ENSDNOG00000034391	UPF3A	79	71.060	Dasypus_novemcinctus
ENSPCAG00000013124	UPF3A	57	51.056	ENSDORG00000006077	Upf3b	51	53.689	Dipodomys_ordii
ENSPCAG00000013124	UPF3A	68	88.854	ENSETEG00000010110	UPF3A	70	87.316	Echinops_telfairi
ENSPCAG00000013124	UPF3A	78	67.857	ENSEASG00005021884	UPF3A	80	68.452	Equus_asinus_asinus
ENSPCAG00000013124	UPF3A	51	46.939	ENSEASG00005012919	UPF3B	52	46.122	Equus_asinus_asinus
ENSPCAG00000013124	UPF3A	51	46.939	ENSECAG00000016947	UPF3B	52	46.122	Equus_caballus
ENSPCAG00000013124	UPF3A	75	68.038	ENSECAG00000017141	UPF3A	80	68.155	Equus_caballus
ENSPCAG00000013124	UPF3A	56	61.049	ENSELUG00000011050	upf3a	60	59.353	Esox_lucius
ENSPCAG00000013124	UPF3A	67	68.339	ENSFCAG00000014602	UPF3A	70	67.552	Felis_catus
ENSPCAG00000013124	UPF3A	51	52.964	ENSFCAG00000004388	UPF3B	53	52.964	Felis_catus
ENSPCAG00000013124	UPF3A	56	50.000	ENSFDAG00000018869	UPF3B	53	52.569	Fukomys_damarensis
ENSPCAG00000013124	UPF3A	50	53.012	ENSGMOG00000001621	upf3b	52	53.012	Gadus_morhua
ENSPCAG00000013124	UPF3A	51	52.964	ENSGGOG00000023995	UPF3B	59	49.822	Gorilla_gorilla
ENSPCAG00000013124	UPF3A	72	58.537	ENSGGOG00000041219	-	66	59.925	Gorilla_gorilla
ENSPCAG00000013124	UPF3A	66	58.537	ENSGGOG00000043074	-	62	60.075	Gorilla_gorilla
ENSPCAG00000013124	UPF3A	79	69.617	ENSGGOG00000015428	UPF3A	79	69.322	Gorilla_gorilla
ENSPCAG00000013124	UPF3A	70	63.018	ENSHGLG00000001544	UPF3A	80	62.130	Heterocephalus_glaber_female
ENSPCAG00000013124	UPF3A	56	49.643	ENSHGLG00000019582	-	53	52.174	Heterocephalus_glaber_female
ENSPCAG00000013124	UPF3A	56	40.217	ENSHGLG00000011189	-	59	47.431	Heterocephalus_glaber_female
ENSPCAG00000013124	UPF3A	56	40.217	ENSHGLG00100001889	-	59	47.431	Heterocephalus_glaber_male
ENSPCAG00000013124	UPF3A	70	63.018	ENSHGLG00100013244	UPF3A	80	62.130	Heterocephalus_glaber_male
ENSPCAG00000013124	UPF3A	56	49.643	ENSHGLG00100002042	-	54	52.174	Heterocephalus_glaber_male
ENSPCAG00000013124	UPF3A	50	52.846	ENSHCOG00000017004	upf3b	53	52.846	Hippocampus_comes
ENSPCAG00000013124	UPF3A	62	48.052	ENSSTOG00000001101	UPF3B	59	50.178	Ictidomys_tridecemlineatus
ENSPCAG00000013124	UPF3A	55	50.179	ENSJJAG00000000053	Upf3b	57	50.000	Jaculus_jaculus
ENSPCAG00000013124	UPF3A	57	60.370	ENSKMAG00000004381	upf3a	57	60.674	Kryptolebias_marmoratus
ENSPCAG00000013124	UPF3A	50	48.800	ENSLBEG00000028689	upf3b	54	50.000	Labrus_bergylta
ENSPCAG00000013124	UPF3A	50	53.441	ENSLOCG00000015238	upf3b	57	47.200	Lepisosteus_oculatus
ENSPCAG00000013124	UPF3A	69	57.012	ENSLOCG00000002665	upf3a	66	57.012	Lepisosteus_oculatus
ENSPCAG00000013124	UPF3A	56	62.590	ENSLAFG00000023358	UPF3A	65	63.235	Loxodonta_africana
ENSPCAG00000013124	UPF3A	70	64.412	ENSMFAG00000045016	UPF3A	69	64.412	Macaca_fascicularis
ENSPCAG00000013124	UPF3A	51	52.964	ENSMFAG00000045414	UPF3B	77	51.515	Macaca_fascicularis
ENSPCAG00000013124	UPF3A	51	52.964	ENSMMUG00000020222	UPF3B	77	51.515	Macaca_mulatta
ENSPCAG00000013124	UPF3A	70	64.307	ENSMMUG00000007449	UPF3A	68	63.717	Macaca_mulatta
ENSPCAG00000013124	UPF3A	51	52.964	ENSMNEG00000039794	UPF3B	77	51.515	Macaca_nemestrina
ENSPCAG00000013124	UPF3A	79	62.178	ENSMNEG00000036402	UPF3A	67	67.586	Macaca_nemestrina
ENSPCAG00000013124	UPF3A	51	52.964	ENSMLEG00000010999	UPF3B	77	51.515	Mandrillus_leucophaeus
ENSPCAG00000013124	UPF3A	64	69.663	ENSMLEG00000014726	UPF3A	70	69.663	Mandrillus_leucophaeus
ENSPCAG00000013124	UPF3A	52	69.076	ENSMGAG00000014837	UPF3A	62	69.076	Meleagris_gallopavo
ENSPCAG00000013124	UPF3A	53	53.731	ENSMAUG00000008705	Upf3b	51	56.612	Mesocricetus_auratus
ENSPCAG00000013124	UPF3A	66	66.250	ENSMOCG00000000550	Upf3a	88	65.625	Microtus_ochrogaster
ENSPCAG00000013124	UPF3A	56	74.349	ENSMODG00000003159	UPF3A	63	74.349	Monodelphis_domestica
ENSPCAG00000013124	UPF3A	54	50.554	MGP_CAROLIEiJ_G0032999	Upf3b	51	53.689	Mus_caroli
ENSPCAG00000013124	UPF3A	61	67.474	MGP_CAROLIEiJ_G0030848	Upf3a	73	66.667	Mus_caroli
ENSPCAG00000013124	UPF3A	54	50.554	ENSMUSG00000036572	Upf3b	51	53.689	Mus_musculus
ENSPCAG00000013124	UPF3A	62	67.003	ENSMUSG00000038398	Upf3a	73	65.931	Mus_musculus
ENSPCAG00000013124	UPF3A	65	64.078	MGP_PahariEiJ_G0021311	Upf3a	75	63.526	Mus_pahari
ENSPCAG00000013124	UPF3A	54	50.554	MGP_PahariEiJ_G0031543	Upf3b	51	53.689	Mus_pahari
ENSPCAG00000013124	UPF3A	54	50.554	MGP_SPRETEiJ_G0034152	Upf3b	51	53.689	Mus_spretus
ENSPCAG00000013124	UPF3A	62	67.003	MGP_SPRETEiJ_G0031958	Upf3a	73	65.931	Mus_spretus
ENSPCAG00000013124	UPF3A	51	52.964	ENSMPUG00000001531	UPF3B	54	52.964	Mustela_putorius_furo
ENSPCAG00000013124	UPF3A	70	67.257	ENSMPUG00000009139	UPF3A	69	66.962	Mustela_putorius_furo
ENSPCAG00000013124	UPF3A	51	52.964	ENSMLUG00000010821	UPF3B	53	52.964	Myotis_lucifugus
ENSPCAG00000013124	UPF3A	64	68.266	ENSMLUG00000015905	UPF3A	76	68.266	Myotis_lucifugus
ENSPCAG00000013124	UPF3A	67	66.975	ENSNGAG00000019314	Upf3a	74	66.358	Nannospalax_galili
ENSPCAG00000013124	UPF3A	70	69.027	ENSNLEG00000007563	UPF3A	79	68.732	Nomascus_leucogenys
ENSPCAG00000013124	UPF3A	51	52.964	ENSNLEG00000014897	UPF3B	60	46.903	Nomascus_leucogenys
ENSPCAG00000013124	UPF3A	58	59.859	ENSOANG00000006985	-	67	61.338	Ornithorhynchus_anatinus
ENSPCAG00000013124	UPF3A	64	55.449	ENSOCUG00000008450	UPF3A	63	55.128	Oryctolagus_cuniculus
ENSPCAG00000013124	UPF3A	55	60.153	ENSORLG00000010911	upf3a	55	60.700	Oryzias_latipes
ENSPCAG00000013124	UPF3A	50	41.152	ENSORLG00000001026	upf3b	54	49.004	Oryzias_latipes
ENSPCAG00000013124	UPF3A	50	41.564	ENSORLG00020003758	upf3b	54	49.402	Oryzias_latipes_hni
ENSPCAG00000013124	UPF3A	55	60.000	ENSORLG00020014317	upf3a	55	60.547	Oryzias_latipes_hni
ENSPCAG00000013124	UPF3A	50	41.564	ENSORLG00015012954	upf3b	54	49.801	Oryzias_latipes_hsok
ENSPCAG00000013124	UPF3A	70	67.552	ENSOGAG00000004788	UPF3A	81	67.257	Otolemur_garnettii
ENSPCAG00000013124	UPF3A	54	50.923	ENSOGAG00000004643	-	59	49.822	Otolemur_garnettii
ENSPCAG00000013124	UPF3A	62	67.893	ENSOARG00000009004	UPF3A	59	69.176	Ovis_aries
ENSPCAG00000013124	UPF3A	51	52.964	ENSPPAG00000040390	UPF3B	59	49.822	Pan_paniscus
ENSPCAG00000013124	UPF3A	79	68.047	ENSPPAG00000042267	UPF3A	79	67.751	Pan_paniscus
ENSPCAG00000013124	UPF3A	67	68.966	ENSPPRG00000025062	UPF3A	70	68.142	Panthera_pardus
ENSPCAG00000013124	UPF3A	51	52.964	ENSPPRG00000023536	UPF3B	53	52.964	Panthera_pardus
ENSPCAG00000013124	UPF3A	51	52.964	ENSPTIG00000015264	UPF3B	51	52.964	Panthera_tigris_altaica
ENSPCAG00000013124	UPF3A	79	69.027	ENSPTRG00000006073	UPF3A	79	68.732	Pan_troglodytes
ENSPCAG00000013124	UPF3A	64	60.000	ENSPTRG00000041187	-	67	58.537	Pan_troglodytes
ENSPCAG00000013124	UPF3A	51	52.964	ENSPTRG00000022228	UPF3B	59	49.822	Pan_troglodytes
ENSPCAG00000013124	UPF3A	73	58.537	ENSPTRG00000051640	-	69	58.537	Pan_troglodytes
ENSPCAG00000013124	UPF3A	75	60.000	ENSPTRG00000041835	-	65	60.000	Pan_troglodytes
ENSPCAG00000013124	UPF3A	51	52.964	ENSPANG00000000900	UPF3B	77	51.515	Papio_anubis
ENSPCAG00000013124	UPF3A	70	68.732	ENSPANG00000004346	UPF3A	78	67.847	Papio_anubis
ENSPCAG00000013124	UPF3A	70	54.655	ENSPKIG00000004422	upf3a	66	54.491	Paramormyrops_kingsleyae
ENSPCAG00000013124	UPF3A	50	53.815	ENSPKIG00000019226	upf3b	75	45.299	Paramormyrops_kingsleyae
ENSPCAG00000013124	UPF3A	56	70.037	ENSPSIG00000007468	UPF3A	65	70.037	Pelodiscus_sinensis
ENSPCAG00000013124	UPF3A	54	50.923	ENSPEMG00000012352	Upf3b	51	54.098	Peromyscus_maniculatus_bairdii
ENSPCAG00000013124	UPF3A	66	65.625	ENSPEMG00000019968	-	74	65.312	Peromyscus_maniculatus_bairdii
ENSPCAG00000013124	UPF3A	66	57.006	ENSPLAG00000011960	upf3a	86	41.279	Poecilia_latipinna
ENSPCAG00000013124	UPF3A	79	69.322	ENSPPYG00000005536	UPF3A	79	69.027	Pongo_abelii
ENSPCAG00000013124	UPF3A	78	66.265	ENSPVAG00000005656	UPF3A	78	66.265	Pteropus_vampyrus
ENSPCAG00000013124	UPF3A	50	51.406	ENSPNAG00000021528	upf3b	59	49.640	Pygocentrus_nattereri
ENSPCAG00000013124	UPF3A	54	50.554	ENSRNOG00000039994	Upf3b	51	53.689	Rattus_norvegicus
ENSPCAG00000013124	UPF3A	68	63.526	ENSRNOG00000017397	Upf3a	79	63.526	Rattus_norvegicus
ENSPCAG00000013124	UPF3A	67	69.784	ENSRBIG00000034007	UPF3A	70	69.784	Rhinopithecus_bieti
ENSPCAG00000013124	UPF3A	64	70.301	ENSRROG00000012212	UPF3A	63	70.301	Rhinopithecus_roxellana
ENSPCAG00000013124	UPF3A	51	52.964	ENSRROG00000041031	UPF3B	77	51.515	Rhinopithecus_roxellana
ENSPCAG00000013124	UPF3A	79	59.824	ENSSBOG00000029989	UPF3A	69	79.275	Saimiri_boliviensis_boliviensis
ENSPCAG00000013124	UPF3A	51	52.964	ENSSBOG00000019740	UPF3B	78	52.147	Saimiri_boliviensis_boliviensis
ENSPCAG00000013124	UPF3A	58	72.563	ENSSHAG00000009895	UPF3A	66	72.563	Sarcophilus_harrisii
ENSPCAG00000013124	UPF3A	52	53.488	ENSSFOG00015005614	upf3b	56	53.488	Scleropages_formosus
ENSPCAG00000013124	UPF3A	50	52.191	ENSSMAG00000012913	upf3b	53	52.191	Scophthalmus_maximus
ENSPCAG00000013124	UPF3A	56	83.083	ENSSARG00000007262	UPF3A	65	78.947	Sorex_araneus
ENSPCAG00000013124	UPF3A	70	65.782	ENSSSCG00000024679	UPF3A	81	66.071	Sus_scrofa
ENSPCAG00000013124	UPF3A	58	71.326	ENSTGUG00000009493	UPF3A	71	71.223	Taeniopygia_guttata
ENSPCAG00000013124	UPF3A	54	47.692	ENSTNIG00000014973	upf3a	64	48.249	Tetraodon_nigroviridis
ENSPCAG00000013124	UPF3A	64	76.684	ENSTTRG00000015414	UPF3A	64	76.684	Tursiops_truncatus
ENSPCAG00000013124	UPF3A	51	44.082	ENSUAMG00000024565	UPF3B	52	49.407	Ursus_americanus
ENSPCAG00000013124	UPF3A	50	42.739	ENSUMAG00000002150	UPF3B	52	48.193	Ursus_maritimus
ENSPCAG00000013124	UPF3A	56	69.549	ENSVPAG00000003525	UPF3A	66	69.549	Vicugna_pacos
ENSPCAG00000013124	UPF3A	51	44.082	ENSVVUG00000011594	UPF3B	77	51.515	Vulpes_vulpes
ENSPCAG00000013124	UPF3A	69	66.168	ENSVVUG00000013538	UPF3A	67	66.168	Vulpes_vulpes
ENSPCAG00000013124	UPF3A	57	51.648	ENSXETG00000002572	upf3a	65	51.648	Xenopus_tropicalis