EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPCAG00000016183 (Gene tree)
Gene ID: -
Gene Symbol: SMNDC1
Alias: SMNR|SPF30|TDRD16C
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Procavia_capensis
Status: putative
Strand: Minus strand
Length: 8623 bases
Position: chrGeneScaffold_2441:154240-162862
Accession: 16900
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCAP00000015111	SMN	PF06003.12	8.2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCAT00000016144	SMNDC1-201	579	-	ENSPCAP00000015111	193 (aa)	-	UPI00018B049D

Gene Model

Click here to download ENSPCAG00000016183's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCAG00000016183's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCAG00000016183	SMNDC1	100	98.964	ENSG00000119953	SMNDC1	81	98.964	Homo_sapiens
ENSPCAG00000016183	SMNDC1	100	70.466	ENSAPOG00000021772	smndc1	81	70.466	Acanthochromis_polyacanthus
ENSPCAG00000016183	SMNDC1	100	98.446	ENSAMEG00000005251	SMNDC1	81	98.446	Ailuropoda_melanoleuca
ENSPCAG00000016183	SMNDC1	100	73.196	ENSACIG00000004819	smndc1	81	73.196	Amphilophus_citrinellus
ENSPCAG00000016183	SMNDC1	100	70.466	ENSAOCG00000017869	smndc1	81	70.466	Amphiprion_ocellaris
ENSPCAG00000016183	SMNDC1	100	70.466	ENSAPEG00000007752	smndc1	81	70.466	Amphiprion_percula
ENSPCAG00000016183	SMNDC1	100	72.021	ENSATEG00000006830	smndc1	81	72.021	Anabas_testudineus
ENSPCAG00000016183	SMNDC1	79	94.118	ENSAPLG00000004322	SMNDC1	77	94.118	Anas_platyrhynchos
ENSPCAG00000016183	SMNDC1	100	93.782	ENSACAG00000005983	SMNDC1	81	93.782	Anolis_carolinensis
ENSPCAG00000016183	SMNDC1	100	98.446	ENSANAG00000032875	SMNDC1	81	98.446	Aotus_nancymaae
ENSPCAG00000016183	SMNDC1	100	72.021	ENSACLG00000016360	smndc1	88	72.021	Astatotilapia_calliptera
ENSPCAG00000016183	SMNDC1	100	73.057	ENSAMXG00000020310	smndc1	81	73.057	Astyanax_mexicanus
ENSPCAG00000016183	SMNDC1	100	97.927	ENSBTAG00000000551	SMNDC1	81	97.927	Bos_taurus
ENSPCAG00000016183	SMNDC1	100	98.446	ENSCJAG00000018624	SMNDC1	81	98.446	Callithrix_jacchus
ENSPCAG00000016183	SMNDC1	100	98.446	ENSCAFG00000010720	SMNDC1	81	98.446	Canis_familiaris
ENSPCAG00000016183	SMNDC1	100	98.446	ENSCAFG00020011913	SMNDC1	81	98.446	Canis_lupus_dingo
ENSPCAG00000016183	SMNDC1	100	97.927	ENSCHIG00000010604	SMNDC1	81	97.927	Capra_hircus
ENSPCAG00000016183	SMNDC1	100	97.927	ENSTSYG00000026454	SMNDC1	81	97.927	Carlito_syrichta
ENSPCAG00000016183	SMNDC1	100	97.409	ENSCAPG00000009132	SMNDC1	96	97.409	Cavia_aperea
ENSPCAG00000016183	SMNDC1	100	97.409	ENSCPOG00000031666	SMNDC1	81	97.409	Cavia_porcellus
ENSPCAG00000016183	SMNDC1	100	98.446	ENSCCAG00000021793	SMNDC1	81	98.446	Cebus_capucinus
ENSPCAG00000016183	SMNDC1	100	98.446	ENSCATG00000035910	SMNDC1	81	98.446	Cercocebus_atys
ENSPCAG00000016183	SMNDC1	100	96.891	ENSCLAG00000002838	SMNDC1	81	96.891	Chinchilla_lanigera
ENSPCAG00000016183	SMNDC1	100	98.446	ENSCSAG00000005169	SMNDC1	81	98.446	Chlorocebus_sabaeus
ENSPCAG00000016183	SMNDC1	100	97.927	ENSCHOG00000002936	SMNDC1	100	97.927	Choloepus_hoffmanni
ENSPCAG00000016183	SMNDC1	100	95.855	ENSCPBG00000012837	SMNDC1	81	95.855	Chrysemys_picta_bellii
ENSPCAG00000016183	SMNDC1	100	98.446	ENSCANG00000031720	-	81	98.446	Colobus_angolensis_palliatus
ENSPCAG00000016183	SMNDC1	100	90.674	ENSCANG00000034620	-	81	90.674	Colobus_angolensis_palliatus
ENSPCAG00000016183	SMNDC1	100	82.383	ENSCANG00000036994	-	85	82.383	Colobus_angolensis_palliatus
ENSPCAG00000016183	SMNDC1	100	97.409	ENSCGRG00001012973	Smndc1	81	97.409	Cricetulus_griseus_chok1gshd
ENSPCAG00000016183	SMNDC1	100	97.409	ENSCGRG00000012396	Smndc1	81	97.409	Cricetulus_griseus_crigri
ENSPCAG00000016183	SMNDC1	100	70.984	ENSCSEG00000015621	smndc1	87	70.984	Cynoglossus_semilaevis
ENSPCAG00000016183	SMNDC1	100	72.539	ENSCVAG00000020432	smndc1	81	72.539	Cyprinodon_variegatus
ENSPCAG00000016183	SMNDC1	100	75.648	ENSDARG00000056235	smndc1	81	75.648	Danio_rerio
ENSPCAG00000016183	SMNDC1	100	98.446	ENSDNOG00000016387	SMNDC1	67	98.446	Dasypus_novemcinctus
ENSPCAG00000016183	SMNDC1	100	98.446	ENSDORG00000023715	Smndc1	81	98.446	Dipodomys_ordii
ENSPCAG00000016183	SMNDC1	90	40.102	FBgn0039977	CG17454	82	40.385	Drosophila_melanogaster
ENSPCAG00000016183	SMNDC1	100	67.857	ENSEBUG00000010929	smndc1	81	67.857	Eptatretus_burgeri
ENSPCAG00000016183	SMNDC1	100	98.446	ENSEASG00005014930	SMNDC1	81	98.446	Equus_asinus_asinus
ENSPCAG00000016183	SMNDC1	100	98.446	ENSECAG00000029973	SMNDC1	81	98.446	Equus_caballus
ENSPCAG00000016183	SMNDC1	79	62.092	ENSEEUG00000013407	-	77	62.092	Erinaceus_europaeus
ENSPCAG00000016183	SMNDC1	100	73.057	ENSELUG00000000227	smndc1	81	73.057	Esox_lucius
ENSPCAG00000016183	SMNDC1	100	98.446	ENSFCAG00000027353	SMNDC1	81	98.446	Felis_catus
ENSPCAG00000016183	SMNDC1	100	94.819	ENSFALG00000002306	SMNDC1	81	94.819	Ficedula_albicollis
ENSPCAG00000016183	SMNDC1	100	97.927	ENSFDAG00000006468	SMNDC1	81	97.927	Fukomys_damarensis
ENSPCAG00000016183	SMNDC1	100	72.021	ENSFHEG00000020150	smndc1	81	72.021	Fundulus_heteroclitus
ENSPCAG00000016183	SMNDC1	100	72.539	ENSGMOG00000016585	smndc1	81	72.539	Gadus_morhua
ENSPCAG00000016183	SMNDC1	100	94.819	ENSGALG00000008561	SMNDC1	81	94.819	Gallus_gallus
ENSPCAG00000016183	SMNDC1	100	70.466	ENSGAFG00000011582	smndc1	81	70.466	Gambusia_affinis
ENSPCAG00000016183	SMNDC1	100	70.466	ENSGACG00000009468	smndc1	81	70.466	Gasterosteus_aculeatus
ENSPCAG00000016183	SMNDC1	100	95.855	ENSGAGG00000024547	SMNDC1	81	95.855	Gopherus_agassizii
ENSPCAG00000016183	SMNDC1	100	98.446	ENSGGOG00000010071	SMNDC1	81	98.446	Gorilla_gorilla
ENSPCAG00000016183	SMNDC1	100	72.021	ENSHBUG00000017596	smndc1	81	72.021	Haplochromis_burtoni
ENSPCAG00000016183	SMNDC1	100	97.927	ENSHGLG00000013390	-	81	97.927	Heterocephalus_glaber_female
ENSPCAG00000016183	SMNDC1	100	63.819	ENSHGLG00000001157	-	79	60.500	Heterocephalus_glaber_female
ENSPCAG00000016183	SMNDC1	100	97.927	ENSHGLG00100004814	-	81	97.927	Heterocephalus_glaber_male
ENSPCAG00000016183	SMNDC1	100	73.869	ENSHGLG00100004278	-	80	70.792	Heterocephalus_glaber_male
ENSPCAG00000016183	SMNDC1	100	70.619	ENSHCOG00000000783	smndc1	81	70.619	Hippocampus_comes
ENSPCAG00000016183	SMNDC1	100	74.093	ENSIPUG00000004217	smndc1	81	74.093	Ictalurus_punctatus
ENSPCAG00000016183	SMNDC1	100	97.927	ENSSTOG00000006088	SMNDC1	81	97.927	Ictidomys_tridecemlineatus
ENSPCAG00000016183	SMNDC1	100	97.409	ENSJJAG00000019974	Smndc1	81	97.409	Jaculus_jaculus
ENSPCAG00000016183	SMNDC1	100	70.466	ENSKMAG00000020134	smndc1	81	70.466	Kryptolebias_marmoratus
ENSPCAG00000016183	SMNDC1	100	69.948	ENSLBEG00000004598	smndc1	81	69.948	Labrus_bergylta
ENSPCAG00000016183	SMNDC1	100	79.793	ENSLACG00000007784	SMNDC1	81	79.793	Latimeria_chalumnae
ENSPCAG00000016183	SMNDC1	100	80.311	ENSLOCG00000012355	smndc1	81	80.311	Lepisosteus_oculatus
ENSPCAG00000016183	SMNDC1	100	98.964	ENSLAFG00000014353	SMNDC1	81	98.964	Loxodonta_africana
ENSPCAG00000016183	SMNDC1	100	98.446	ENSMFAG00000002433	-	81	98.446	Macaca_fascicularis
ENSPCAG00000016183	SMNDC1	100	78.238	ENSMFAG00000038381	-	78	78.238	Macaca_fascicularis
ENSPCAG00000016183	SMNDC1	100	98.446	ENSMMUG00000007775	SMNDC1	81	98.446	Macaca_mulatta
ENSPCAG00000016183	SMNDC1	100	78.238	ENSMMUG00000045875	-	78	78.238	Macaca_mulatta
ENSPCAG00000016183	SMNDC1	100	98.446	ENSMNEG00000042963	-	81	98.446	Macaca_nemestrina
ENSPCAG00000016183	SMNDC1	93	89.444	ENSMNEG00000033853	-	79	89.444	Macaca_nemestrina
ENSPCAG00000016183	SMNDC1	100	91.237	ENSMLEG00000040236	SMNDC1	81	90.722	Mandrillus_leucophaeus
ENSPCAG00000016183	SMNDC1	100	72.539	ENSMAMG00000018233	smndc1	79	72.539	Mastacembelus_armatus
ENSPCAG00000016183	SMNDC1	100	72.021	ENSMZEG00005027510	smndc1	83	70.984	Maylandia_zebra
ENSPCAG00000016183	SMNDC1	80	93.548	ENSMGAG00000010777	SMNDC1	65	93.548	Meleagris_gallopavo
ENSPCAG00000016183	SMNDC1	100	98.446	ENSMAUG00000012243	-	81	98.446	Mesocricetus_auratus
ENSPCAG00000016183	SMNDC1	99	81.250	ENSMAUG00000005459	-	76	81.250	Mesocricetus_auratus
ENSPCAG00000016183	SMNDC1	100	97.927	ENSMICG00000027336	-	81	97.927	Microcebus_murinus
ENSPCAG00000016183	SMNDC1	100	83.938	ENSMICG00000031640	-	80	83.938	Microcebus_murinus
ENSPCAG00000016183	SMNDC1	100	97.927	ENSMOCG00000002458	Smndc1	81	97.927	Microtus_ochrogaster
ENSPCAG00000016183	SMNDC1	100	70.984	ENSMMOG00000008856	smndc1	81	70.984	Mola_mola
ENSPCAG00000016183	SMNDC1	100	98.446	ENSMODG00000010542	SMNDC1	81	98.446	Monodelphis_domestica
ENSPCAG00000016183	SMNDC1	100	72.021	ENSMALG00000017598	smndc1	81	72.021	Monopterus_albus
ENSPCAG00000016183	SMNDC1	100	97.927	MGP_CAROLIEiJ_G0023072	Smndc1	81	97.927	Mus_caroli
ENSPCAG00000016183	SMNDC1	100	98.446	ENSMUSG00000025024	Smndc1	81	98.446	Mus_musculus
ENSPCAG00000016183	SMNDC1	100	97.927	MGP_PahariEiJ_G0014560	Smndc1	81	97.927	Mus_pahari
ENSPCAG00000016183	SMNDC1	100	98.446	MGP_SPRETEiJ_G0023993	Smndc1	81	98.446	Mus_spretus
ENSPCAG00000016183	SMNDC1	100	98.446	ENSMPUG00000002089	SMNDC1	81	98.446	Mustela_putorius_furo
ENSPCAG00000016183	SMNDC1	100	96.891	ENSMLUG00000016007	SMNDC1	81	96.891	Myotis_lucifugus
ENSPCAG00000016183	SMNDC1	100	98.446	ENSNGAG00000006833	Smndc1	81	98.446	Nannospalax_galili
ENSPCAG00000016183	SMNDC1	100	71.503	ENSNBRG00000017089	smndc1	81	71.503	Neolamprologus_brichardi
ENSPCAG00000016183	SMNDC1	100	98.446	ENSNLEG00000015471	SMNDC1	81	98.446	Nomascus_leucogenys
ENSPCAG00000016183	SMNDC1	78	54.194	ENSMEUG00000010120	-	76	54.839	Notamacropus_eugenii
ENSPCAG00000016183	SMNDC1	100	97.409	ENSOPRG00000015348	SMNDC1	81	97.409	Ochotona_princeps
ENSPCAG00000016183	SMNDC1	100	66.321	ENSODEG00000007594	-	78	62.694	Octodon_degus
ENSPCAG00000016183	SMNDC1	100	71.503	ENSONIG00000000434	smndc1	81	71.503	Oreochromis_niloticus
ENSPCAG00000016183	SMNDC1	100	96.891	ENSOANG00000001598	SMNDC1	81	96.891	Ornithorhynchus_anatinus
ENSPCAG00000016183	SMNDC1	92	76.836	ENSOCUG00000012274	-	76	79.096	Oryctolagus_cuniculus
ENSPCAG00000016183	SMNDC1	100	97.409	ENSOCUG00000008145	-	81	97.409	Oryctolagus_cuniculus
ENSPCAG00000016183	SMNDC1	100	70.466	ENSORLG00000005934	smndc1	77	70.466	Oryzias_latipes
ENSPCAG00000016183	SMNDC1	100	70.466	ENSORLG00020008796	smndc1	77	70.466	Oryzias_latipes_hni
ENSPCAG00000016183	SMNDC1	100	70.466	ENSORLG00015013666	smndc1	81	70.466	Oryzias_latipes_hsok
ENSPCAG00000016183	SMNDC1	100	72.539	ENSOMEG00000007590	smndc1	81	72.539	Oryzias_melastigma
ENSPCAG00000016183	SMNDC1	100	97.927	ENSOGAG00000000571	SMNDC1	81	97.927	Otolemur_garnettii
ENSPCAG00000016183	SMNDC1	100	97.927	ENSOARG00000009500	SMNDC1	81	97.927	Ovis_aries
ENSPCAG00000016183	SMNDC1	100	98.446	ENSPPAG00000027815	SMNDC1	81	98.446	Pan_paniscus
ENSPCAG00000016183	SMNDC1	100	98.446	ENSPPRG00000013749	SMNDC1	81	98.446	Panthera_pardus
ENSPCAG00000016183	SMNDC1	100	98.446	ENSPTIG00000011451	SMNDC1	81	98.446	Panthera_tigris_altaica
ENSPCAG00000016183	SMNDC1	100	98.446	ENSPTRG00000002937	SMNDC1	81	98.446	Pan_troglodytes
ENSPCAG00000016183	SMNDC1	100	92.228	ENSPANG00000031346	-	81	92.228	Papio_anubis
ENSPCAG00000016183	SMNDC1	100	98.446	ENSPANG00000020805	-	81	98.446	Papio_anubis
ENSPCAG00000016183	SMNDC1	100	76.166	ENSPKIG00000017164	smndc1	81	76.166	Paramormyrops_kingsleyae
ENSPCAG00000016183	SMNDC1	100	96.373	ENSPSIG00000012257	SMNDC1	81	96.373	Pelodiscus_sinensis
ENSPCAG00000016183	SMNDC1	100	67.876	ENSPMGG00000015651	smndc1	81	67.876	Periophthalmus_magnuspinnatus
ENSPCAG00000016183	SMNDC1	100	98.446	ENSPEMG00000022058	Smndc1	81	98.446	Peromyscus_maniculatus_bairdii
ENSPCAG00000016183	SMNDC1	100	64.824	ENSPMAG00000007705	smndc1	81	64.824	Petromyzon_marinus
ENSPCAG00000016183	SMNDC1	95	57.609	ENSPCIG00000009693	-	77	57.609	Phascolarctos_cinereus
ENSPCAG00000016183	SMNDC1	100	98.446	ENSPCIG00000018419	SMNDC1	81	98.446	Phascolarctos_cinereus
ENSPCAG00000016183	SMNDC1	100	70.984	ENSPFOG00000017113	smndc1	81	70.984	Poecilia_formosa
ENSPCAG00000016183	SMNDC1	100	71.503	ENSPLAG00000010372	smndc1	81	71.503	Poecilia_latipinna
ENSPCAG00000016183	SMNDC1	100	71.503	ENSPMEG00000012288	smndc1	81	71.503	Poecilia_mexicana
ENSPCAG00000016183	SMNDC1	100	70.466	ENSPREG00000012279	smndc1	81	70.466	Poecilia_reticulata
ENSPCAG00000016183	SMNDC1	100	98.446	ENSPPYG00000002643	SMNDC1	81	98.446	Pongo_abelii
ENSPCAG00000016183	SMNDC1	100	98.446	ENSPCOG00000024343	SMNDC1	81	98.446	Propithecus_coquereli
ENSPCAG00000016183	SMNDC1	100	69.948	ENSPVAG00000004368	SMNDC1	81	69.948	Pteropus_vampyrus
ENSPCAG00000016183	SMNDC1	98	60.317	ENSPNYG00000024093	smndc1	79	60.317	Pundamilia_nyererei
ENSPCAG00000016183	SMNDC1	100	73.057	ENSPNAG00000025285	smndc1	81	73.057	Pygocentrus_nattereri
ENSPCAG00000016183	SMNDC1	100	97.927	ENSRNOG00000014833	Smndc1	81	97.927	Rattus_norvegicus
ENSPCAG00000016183	SMNDC1	96	89.730	ENSRBIG00000032452	-	85	89.730	Rhinopithecus_bieti
ENSPCAG00000016183	SMNDC1	100	97.927	ENSRBIG00000000224	-	81	97.927	Rhinopithecus_bieti
ENSPCAG00000016183	SMNDC1	96	90.270	ENSRROG00000039125	-	85	90.270	Rhinopithecus_roxellana
ENSPCAG00000016183	SMNDC1	100	98.446	ENSRROG00000044992	-	81	98.446	Rhinopithecus_roxellana
ENSPCAG00000016183	SMNDC1	100	98.446	ENSSBOG00000026789	SMNDC1	81	98.446	Saimiri_boliviensis_boliviensis
ENSPCAG00000016183	SMNDC1	100	98.446	ENSSHAG00000015189	SMNDC1	81	98.446	Sarcophilus_harrisii
ENSPCAG00000016183	SMNDC1	100	75.130	ENSSFOG00015008311	smndc1	81	75.130	Scleropages_formosus
ENSPCAG00000016183	SMNDC1	100	71.503	ENSSMAG00000020118	smndc1	81	71.503	Scophthalmus_maximus
ENSPCAG00000016183	SMNDC1	100	72.539	ENSSDUG00000015330	smndc1	81	72.539	Seriola_dumerili
ENSPCAG00000016183	SMNDC1	100	72.539	ENSSLDG00000017325	smndc1	81	72.539	Seriola_lalandi_dorsalis
ENSPCAG00000016183	SMNDC1	100	96.891	ENSSARG00000006063	SMNDC1	81	96.891	Sorex_araneus
ENSPCAG00000016183	SMNDC1	100	95.337	ENSSPUG00000004574	SMNDC1	81	95.337	Sphenodon_punctatus
ENSPCAG00000016183	SMNDC1	100	69.948	ENSSPAG00000000338	smndc1	81	69.948	Stegastes_partitus
ENSPCAG00000016183	SMNDC1	100	97.927	ENSSSCG00000030507	SMNDC1	81	97.927	Sus_scrofa
ENSPCAG00000016183	SMNDC1	100	94.819	ENSTGUG00000010599	SMNDC1	81	94.819	Taeniopygia_guttata
ENSPCAG00000016183	SMNDC1	100	68.912	ENSTRUG00000023281	smndc1	81	68.912	Takifugu_rubripes
ENSPCAG00000016183	SMNDC1	100	69.948	ENSTNIG00000013331	smndc1	81	69.948	Tetraodon_nigroviridis
ENSPCAG00000016183	SMNDC1	100	97.927	ENSTBEG00000014337	SMNDC1	81	97.927	Tupaia_belangeri
ENSPCAG00000016183	SMNDC1	100	98.446	ENSUAMG00000008142	SMNDC1	81	98.446	Ursus_americanus
ENSPCAG00000016183	SMNDC1	100	98.446	ENSUMAG00000023722	SMNDC1	81	98.446	Ursus_maritimus
ENSPCAG00000016183	SMNDC1	79	98.039	ENSVPAG00000003402	SMNDC1	77	98.039	Vicugna_pacos
ENSPCAG00000016183	SMNDC1	100	98.446	ENSVVUG00000007820	SMNDC1	81	98.446	Vulpes_vulpes
ENSPCAG00000016183	SMNDC1	74	81.690	ENSXETG00000015415	SMNDC1	100	81.690	Xenopus_tropicalis
ENSPCAG00000016183	SMNDC1	100	70.466	ENSXCOG00000009159	smndc1	81	70.466	Xiphophorus_couchianus
ENSPCAG00000016183	SMNDC1	100	69.948	ENSXMAG00000012755	smndc1	81	69.948	Xiphophorus_maculatus