EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPCAG00000016412 (Gene tree)
Gene ID: -
Gene Symbol: RAB5C
Alias: RAB5CL|RABL
Full Name: RAB5C%2C member RAS oncogene family
Gene Type: protein_coding
Species: Procavia_capensis
Status: putative
Strand: Minus strand
Length: 3799 bases
Position: chrGeneScaffold_1760:31615-35413
Accession: 9785
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCAP00000015339	MMR_HSR1	PF01926.23	6.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCAT00000016386	RAB5C-201	648	-	ENSPCAP00000015339	215 (aa)	-	UPI00018B01FE

Gene Model

Click here to download ENSPCAG00000016412's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCAG00000016412's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPCAG00000016412	RAB5C	93	40.777	ENSPCAG00000013887	RAB6B	98	40.777
ENSPCAG00000016412	RAB5C	73	30.189	ENSPCAG00000016994	RAB34	61	30.189
ENSPCAG00000016412	RAB5C	89	43.005	ENSPCAG00000015578	RAB1B	96	43.005
ENSPCAG00000016412	RAB5C	81	44.000	ENSPCAG00000006752	RAB6A	94	44.000
ENSPCAG00000016412	RAB5C	90	41.463	ENSPCAG00000002640	RAB11A	94	41.463
ENSPCAG00000016412	RAB5C	75	31.902	ENSPCAG00000014345	NRAS	85	31.902
ENSPCAG00000016412	RAB5C	93	36.058	ENSPCAG00000010026	RAB33B	85	36.683
ENSPCAG00000016412	RAB5C	85	37.234	ENSPCAG00000015007	RAB12	75	37.234
ENSPCAG00000016412	RAB5C	89	40.500	ENSPCAG00000014579	RAB25	93	40.500
ENSPCAG00000016412	RAB5C	83	39.459	ENSPCAG00000000574	RAB30	91	39.459
ENSPCAG00000016412	RAB5C	55	31.148	ENSPCAG00000007412	ARL8A	62	31.148
ENSPCAG00000016412	RAB5C	90	38.164	ENSPCAG00000016118	RAB11B	94	38.164
ENSPCAG00000016412	RAB5C	89	36.041	ENSPCAG00000009936	RAB9A	97	36.041

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCAG00000016412	RAB5C	100	98.148	ENSG00000108774	RAB5C	100	99.194	Homo_sapiens
ENSPCAG00000016412	RAB5C	99	87.907	ENSAPOG00000016864	rab5c	98	90.233	Acanthochromis_polyacanthus
ENSPCAG00000016412	RAB5C	100	98.148	ENSAMEG00000006003	RAB5C	100	98.148	Ailuropoda_melanoleuca
ENSPCAG00000016412	RAB5C	99	87.500	ENSACIG00000010896	rab5c	98	89.352	Amphilophus_citrinellus
ENSPCAG00000016412	RAB5C	99	87.963	ENSAOCG00000016614	rab5c	98	90.278	Amphiprion_ocellaris
ENSPCAG00000016412	RAB5C	97	87.678	ENSAPEG00000017868	-	97	90.047	Amphiprion_percula
ENSPCAG00000016412	RAB5C	100	88.532	ENSATEG00000001937	rab5c	100	89.908	Anabas_testudineus
ENSPCAG00000016412	RAB5C	94	99.015	ENSANAG00000025390	RAB5C	99	99.015	Aotus_nancymaae
ENSPCAG00000016412	RAB5C	99	86.574	ENSACLG00000002706	rab5c	98	89.352	Astatotilapia_calliptera
ENSPCAG00000016412	RAB5C	96	89.100	ENSACLG00000008615	-	99	88.584	Astatotilapia_calliptera
ENSPCAG00000016412	RAB5C	96	86.667	ENSAMXG00000037267	-	99	89.048	Astyanax_mexicanus
ENSPCAG00000016412	RAB5C	99	88.479	ENSAMXG00000043717	rab5c	98	90.323	Astyanax_mexicanus
ENSPCAG00000016412	RAB5C	100	98.148	ENSBTAG00000006982	RAB5C	100	98.148	Bos_taurus
ENSPCAG00000016412	RAB5C	99	75.926	WBGene00004268	rab-5	99	75.926	Caenorhabditis_elegans
ENSPCAG00000016412	RAB5C	100	97.685	ENSCAFG00000015629	RAB5C	100	97.685	Canis_familiaris
ENSPCAG00000016412	RAB5C	100	97.685	ENSCAFG00020013537	RAB5C	100	97.685	Canis_lupus_dingo
ENSPCAG00000016412	RAB5C	100	98.148	ENSCHIG00000012960	RAB5C	100	98.148	Capra_hircus
ENSPCAG00000016412	RAB5C	100	98.611	ENSTSYG00000030531	RAB5C	100	98.611	Carlito_syrichta
ENSPCAG00000016412	RAB5C	100	98.611	ENSCCAG00000025940	RAB5C	100	98.611	Cebus_capucinus
ENSPCAG00000016412	RAB5C	100	98.148	ENSCATG00000040873	RAB5C	100	98.148	Cercocebus_atys
ENSPCAG00000016412	RAB5C	100	96.296	ENSCLAG00000016650	RAB5C	100	96.296	Chinchilla_lanigera
ENSPCAG00000016412	RAB5C	83	98.315	ENSCHOG00000009886	RAB5C	100	98.315	Choloepus_hoffmanni
ENSPCAG00000016412	RAB5C	99	76.852	ENSCING00000003340	-	99	76.852	Ciona_intestinalis
ENSPCAG00000016412	RAB5C	99	75.556	ENSCSAVG00000000613	-	99	82.716	Ciona_savignyi
ENSPCAG00000016412	RAB5C	100	97.222	ENSCGRG00001014226	Rab5c	100	97.222	Cricetulus_griseus_chok1gshd
ENSPCAG00000016412	RAB5C	100	97.222	ENSCGRG00000007534	Rab5c	100	97.222	Cricetulus_griseus_crigri
ENSPCAG00000016412	RAB5C	99	89.815	ENSCSEG00000017024	rab5c	98	89.815	Cynoglossus_semilaevis
ENSPCAG00000016412	RAB5C	99	87.963	ENSCVAG00000009550	rab5c	98	89.815	Cyprinodon_variegatus
ENSPCAG00000016412	RAB5C	100	98.148	ENSDNOG00000038853	RAB5C	100	98.148	Dasypus_novemcinctus
ENSPCAG00000016412	RAB5C	100	97.685	ENSDORG00000006819	Rab5c	100	97.685	Dipodomys_ordii
ENSPCAG00000016412	RAB5C	99	75.000	FBgn0014010	Rab5	95	75.000	Drosophila_melanogaster
ENSPCAG00000016412	RAB5C	99	78.605	ENSEBUG00000014794	rab5c	100	78.605	Eptatretus_burgeri
ENSPCAG00000016412	RAB5C	100	98.148	ENSEASG00005009281	RAB5C	100	98.148	Equus_asinus_asinus
ENSPCAG00000016412	RAB5C	100	98.611	ENSECAG00000025054	RAB5C	100	98.611	Equus_caballus
ENSPCAG00000016412	RAB5C	100	98.148	ENSEEUG00000002790	RAB5C	100	98.148	Erinaceus_europaeus
ENSPCAG00000016412	RAB5C	99	86.574	ENSELUG00000018516	rab5c	99	88.889	Esox_lucius
ENSPCAG00000016412	RAB5C	99	87.037	ENSELUG00000010439	-	98	87.037	Esox_lucius
ENSPCAG00000016412	RAB5C	100	98.148	ENSFCAG00000002148	RAB5C	100	98.148	Felis_catus
ENSPCAG00000016412	RAB5C	100	95.370	ENSFDAG00000021541	RAB5C	100	95.370	Fukomys_damarensis
ENSPCAG00000016412	RAB5C	99	87.963	ENSFHEG00000012117	rab5c	98	89.815	Fundulus_heteroclitus
ENSPCAG00000016412	RAB5C	99	89.862	ENSFHEG00000015268	-	99	89.862	Fundulus_heteroclitus
ENSPCAG00000016412	RAB5C	79	86.982	ENSGMOG00000001876	-	98	86.982	Gadus_morhua
ENSPCAG00000016412	RAB5C	99	86.574	ENSGMOG00000015096	rab5c	98	89.352	Gadus_morhua
ENSPCAG00000016412	RAB5C	96	90.000	ENSGAFG00000003642	-	99	87.273	Gambusia_affinis
ENSPCAG00000016412	RAB5C	99	88.426	ENSGAFG00000000884	rab5c	98	90.278	Gambusia_affinis
ENSPCAG00000016412	RAB5C	87	93.617	ENSGACG00000008659	rab5c	98	85.185	Gasterosteus_aculeatus
ENSPCAG00000016412	RAB5C	100	98.148	ENSGGOG00000005472	RAB5C	100	98.148	Gorilla_gorilla
ENSPCAG00000016412	RAB5C	99	86.574	ENSHBUG00000002014	rab5c	98	89.352	Haplochromis_burtoni
ENSPCAG00000016412	RAB5C	96	89.100	ENSHBUG00000006823	-	99	88.584	Haplochromis_burtoni
ENSPCAG00000016412	RAB5C	100	95.370	ENSHGLG00000012067	RAB5C	100	95.370	Heterocephalus_glaber_female
ENSPCAG00000016412	RAB5C	99	88.479	ENSHCOG00000004662	rab5c	97	89.862	Hippocampus_comes
ENSPCAG00000016412	RAB5C	97	81.132	ENSHCOG00000020238	-	100	79.909	Hippocampus_comes
ENSPCAG00000016412	RAB5C	96	86.667	ENSIPUG00000020082	rab5c	98	87.156	Ictalurus_punctatus
ENSPCAG00000016412	RAB5C	100	96.759	ENSSTOG00000006620	RAB5C	100	96.759	Ictidomys_tridecemlineatus
ENSPCAG00000016412	RAB5C	100	98.148	ENSJJAG00000021181	Rab5c	100	98.148	Jaculus_jaculus
ENSPCAG00000016412	RAB5C	99	87.500	ENSKMAG00000020038	rab5c	98	89.815	Kryptolebias_marmoratus
ENSPCAG00000016412	RAB5C	99	87.558	ENSKMAG00000017417	-	99	87.558	Kryptolebias_marmoratus
ENSPCAG00000016412	RAB5C	99	88.889	ENSLBEG00000004128	rab5c	98	90.741	Labrus_bergylta
ENSPCAG00000016412	RAB5C	100	86.697	ENSLBEG00000010408	-	99	86.697	Labrus_bergylta
ENSPCAG00000016412	RAB5C	99	92.056	ENSLOCG00000012566	rab5c	100	92.056	Lepisosteus_oculatus
ENSPCAG00000016412	RAB5C	100	98.148	ENSMFAG00000039627	RAB5C	100	98.148	Macaca_fascicularis
ENSPCAG00000016412	RAB5C	100	98.148	ENSMNEG00000000355	RAB5C	100	98.148	Macaca_nemestrina
ENSPCAG00000016412	RAB5C	99	87.097	ENSMAMG00000016207	-	99	87.097	Mastacembelus_armatus
ENSPCAG00000016412	RAB5C	99	87.037	ENSMAMG00000022322	rab5c	98	89.352	Mastacembelus_armatus
ENSPCAG00000016412	RAB5C	96	89.100	ENSMZEG00005021090	-	99	88.584	Maylandia_zebra
ENSPCAG00000016412	RAB5C	99	86.574	ENSMZEG00005022735	rab5c	98	89.352	Maylandia_zebra
ENSPCAG00000016412	RAB5C	100	98.148	ENSMAUG00000015005	Rab5c	100	98.148	Mesocricetus_auratus
ENSPCAG00000016412	RAB5C	100	98.148	ENSMICG00000041608	RAB5C	100	98.148	Microcebus_murinus
ENSPCAG00000016412	RAB5C	100	97.222	ENSMOCG00000018531	-	100	97.222	Microtus_ochrogaster
ENSPCAG00000016412	RAB5C	100	88.532	ENSMMOG00000020621	rab5c	99	88.532	Mola_mola
ENSPCAG00000016412	RAB5C	99	86.697	ENSMALG00000022348	-	99	86.697	Monopterus_albus
ENSPCAG00000016412	RAB5C	97	83.412	ENSMALG00000006052	rab5c	96	83.256	Monopterus_albus
ENSPCAG00000016412	RAB5C	100	97.685	MGP_CAROLIEiJ_G0017184	Rab5c	100	97.685	Mus_caroli
ENSPCAG00000016412	RAB5C	100	97.685	ENSMUSG00000019173	Rab5c	100	97.685	Mus_musculus
ENSPCAG00000016412	RAB5C	100	97.685	MGP_PahariEiJ_G0018314	Rab5c	100	97.685	Mus_pahari
ENSPCAG00000016412	RAB5C	100	97.685	MGP_SPRETEiJ_G0018027	Rab5c	100	97.685	Mus_spretus
ENSPCAG00000016412	RAB5C	100	98.148	ENSMPUG00000010554	RAB5C	100	98.148	Mustela_putorius_furo
ENSPCAG00000016412	RAB5C	100	97.685	ENSNGAG00000010286	Rab5c	100	97.685	Nannospalax_galili
ENSPCAG00000016412	RAB5C	96	89.100	ENSNBRG00000016922	-	99	88.584	Neolamprologus_brichardi
ENSPCAG00000016412	RAB5C	99	87.500	ENSNBRG00000018165	rab5c	98	90.278	Neolamprologus_brichardi
ENSPCAG00000016412	RAB5C	83	91.573	ENSOPRG00000008255	RAB5C	100	91.573	Ochotona_princeps
ENSPCAG00000016412	RAB5C	100	95.833	ENSODEG00000017920	RAB5C	100	95.833	Octodon_degus
ENSPCAG00000016412	RAB5C	99	87.500	ENSONIG00000001113	rab5c	98	90.278	Oreochromis_niloticus
ENSPCAG00000016412	RAB5C	100	87.156	ENSORLG00000003882	rab5c	100	88.532	Oryzias_latipes
ENSPCAG00000016412	RAB5C	100	88.073	ENSORLG00020008388	rab5c	100	88.073	Oryzias_latipes_hni
ENSPCAG00000016412	RAB5C	100	87.156	ENSORLG00015021900	rab5c	100	88.532	Oryzias_latipes_hsok
ENSPCAG00000016412	RAB5C	100	87.156	ENSOMEG00000023078	rab5c	100	88.532	Oryzias_melastigma
ENSPCAG00000016412	RAB5C	100	98.148	ENSOGAG00000009456	RAB5C	100	98.148	Otolemur_garnettii
ENSPCAG00000016412	RAB5C	100	98.148	ENSOARG00000018768	RAB5C	100	98.148	Ovis_aries
ENSPCAG00000016412	RAB5C	100	98.148	ENSPPAG00000037206	RAB5C	100	98.148	Pan_paniscus
ENSPCAG00000016412	RAB5C	100	98.148	ENSPPRG00000005745	RAB5C	100	98.148	Panthera_pardus
ENSPCAG00000016412	RAB5C	100	98.148	ENSPTIG00000008177	RAB5C	100	98.148	Panthera_tigris_altaica
ENSPCAG00000016412	RAB5C	100	98.148	ENSPTRG00000009194	RAB5C	100	98.148	Pan_troglodytes
ENSPCAG00000016412	RAB5C	99	87.907	ENSPKIG00000001237	-	99	87.907	Paramormyrops_kingsleyae
ENSPCAG00000016412	RAB5C	99	86.574	ENSPKIG00000020112	-	99	86.574	Paramormyrops_kingsleyae
ENSPCAG00000016412	RAB5C	99	85.185	ENSPMGG00000010792	rab5c	97	89.100	Periophthalmus_magnuspinnatus
ENSPCAG00000016412	RAB5C	100	97.222	ENSPEMG00000017971	Rab5c	100	97.222	Peromyscus_maniculatus_bairdii
ENSPCAG00000016412	RAB5C	99	78.829	ENSPMAG00000000008	rab5c	100	78.829	Petromyzon_marinus
ENSPCAG00000016412	RAB5C	99	78.404	ENSPMAG00000007867	rab5c	99	78.404	Petromyzon_marinus
ENSPCAG00000016412	RAB5C	99	78.972	ENSPMAG00000001399	rab5c	100	78.972	Petromyzon_marinus
ENSPCAG00000016412	RAB5C	100	96.296	ENSPCIG00000020225	-	100	96.296	Phascolarctos_cinereus
ENSPCAG00000016412	RAB5C	99	88.940	ENSPLAG00000016333	-	99	88.940	Poecilia_latipinna
ENSPCAG00000016412	RAB5C	99	88.426	ENSPLAG00000004790	rab5c	98	90.278	Poecilia_latipinna
ENSPCAG00000016412	RAB5C	98	87.324	ENSPMEG00000012614	-	98	87.671	Poecilia_mexicana
ENSPCAG00000016412	RAB5C	99	88.426	ENSPMEG00000011336	rab5c	98	90.278	Poecilia_mexicana
ENSPCAG00000016412	RAB5C	99	88.426	ENSPREG00000010146	rab5c	98	90.278	Poecilia_reticulata
ENSPCAG00000016412	RAB5C	87	91.534	ENSPREG00000022167	-	89	92.896	Poecilia_reticulata
ENSPCAG00000016412	RAB5C	100	98.148	ENSPPYG00000008398	RAB5C	100	98.148	Pongo_abelii
ENSPCAG00000016412	RAB5C	100	97.685	ENSPCOG00000026327	RAB5C	100	97.685	Propithecus_coquereli
ENSPCAG00000016412	RAB5C	100	98.611	ENSPVAG00000003867	RAB5C	100	98.611	Pteropus_vampyrus
ENSPCAG00000016412	RAB5C	96	89.100	ENSPNYG00000015851	-	99	88.584	Pundamilia_nyererei
ENSPCAG00000016412	RAB5C	99	86.574	ENSPNYG00000010615	rab5c	98	89.352	Pundamilia_nyererei
ENSPCAG00000016412	RAB5C	97	84.906	ENSPNAG00000002218	-	99	87.264	Pygocentrus_nattereri
ENSPCAG00000016412	RAB5C	99	89.862	ENSPNAG00000028138	rab5c	98	89.862	Pygocentrus_nattereri
ENSPCAG00000016412	RAB5C	100	98.148	ENSRNOG00000018568	Rab5c	100	98.148	Rattus_norvegicus
ENSPCAG00000016412	RAB5C	100	98.148	ENSRBIG00000031376	RAB5C	100	98.148	Rhinopithecus_bieti
ENSPCAG00000016412	RAB5C	100	98.148	ENSRROG00000032895	RAB5C	100	98.148	Rhinopithecus_roxellana
ENSPCAG00000016412	RAB5C	100	98.611	ENSSBOG00000032552	-	100	98.611	Saimiri_boliviensis_boliviensis
ENSPCAG00000016412	RAB5C	100	96.759	ENSSHAG00000005267	-	100	96.759	Sarcophilus_harrisii
ENSPCAG00000016412	RAB5C	99	87.097	ENSSFOG00015009988	-	99	87.097	Scleropages_formosus
ENSPCAG00000016412	RAB5C	94	91.667	ENSSMAG00000007323	rab5c	98	87.963	Scophthalmus_maximus
ENSPCAG00000016412	RAB5C	99	90.278	ENSSDUG00000023008	rab5c	98	90.278	Seriola_dumerili
ENSPCAG00000016412	RAB5C	99	89.815	ENSSLDG00000017771	rab5c	98	89.815	Seriola_lalandi_dorsalis
ENSPCAG00000016412	RAB5C	100	94.907	ENSSPUG00000012950	-	100	94.907	Sphenodon_punctatus
ENSPCAG00000016412	RAB5C	99	88.426	ENSSPAG00000006436	rab5c	98	91.204	Stegastes_partitus
ENSPCAG00000016412	RAB5C	100	98.148	ENSSSCG00000032467	RAB5C	100	98.148	Sus_scrofa
ENSPCAG00000016412	RAB5C	99	87.037	ENSTRUG00000015590	rab5c	98	89.352	Takifugu_rubripes
ENSPCAG00000016412	RAB5C	96	89.474	ENSTNIG00000011711	rab5c	95	89.474	Tetraodon_nigroviridis
ENSPCAG00000016412	RAB5C	100	98.148	ENSTBEG00000007092	RAB5C	100	98.148	Tupaia_belangeri
ENSPCAG00000016412	RAB5C	100	97.222	ENSTTRG00000006673	RAB5C	100	97.222	Tursiops_truncatus
ENSPCAG00000016412	RAB5C	100	98.148	ENSUAMG00000024343	RAB5C	100	98.148	Ursus_americanus
ENSPCAG00000016412	RAB5C	100	98.148	ENSUMAG00000023270	RAB5C	100	98.148	Ursus_maritimus
ENSPCAG00000016412	RAB5C	96	90.476	ENSXCOG00000006300	-	99	87.727	Xiphophorus_couchianus
ENSPCAG00000016412	RAB5C	99	87.963	ENSXCOG00000016788	rab5c	98	90.278	Xiphophorus_couchianus
ENSPCAG00000016412	RAB5C	99	88.426	ENSXMAG00000003266	rab5c	98	90.278	Xiphophorus_maculatus
ENSPCAG00000016412	RAB5C	99	89.401	ENSXMAG00000022179	-	99	89.401	Xiphophorus_maculatus