EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPCIG00000002175 (Gene tree)
Gene ID: 110199944
Gene Symbol: A1CF
Alias: -
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Phascolarctos_cinereus
Status: putative
Strand: Plus strand
Length: 91045 bases
Position: chrFUWB01000482.1:353335-444379
Accession: 110199944
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCIP00000002656	DND1_DSRM	PF14709.7	9.4e-25	1	1
ENSPCIP00000002667	DND1_DSRM	PF14709.7	9.4e-25	1	1
ENSPCIP00000002638	DND1_DSRM	PF14709.7	8.1e-17	1	1
ENSPCIP00000002638	RRM_5	PF13893.6	1.2e-06	1	2
ENSPCIP00000002638	RRM_5	PF13893.6	1.2e-06	2	2
ENSPCIP00000002656	RRM_5	PF13893.6	1.4e-06	1	2
ENSPCIP00000002656	RRM_5	PF13893.6	1.4e-06	2	2
ENSPCIP00000002667	RRM_5	PF13893.6	1.4e-06	1	2
ENSPCIP00000002667	RRM_5	PF13893.6	1.4e-06	2	2
ENSPCIP00000002638	RRM_1	PF00076.22	9.5e-40	1	3
ENSPCIP00000002638	RRM_1	PF00076.22	9.5e-40	2	3
ENSPCIP00000002638	RRM_1	PF00076.22	9.5e-40	3	3
ENSPCIP00000002656	RRM_1	PF00076.22	1.1e-39	1	3
ENSPCIP00000002656	RRM_1	PF00076.22	1.1e-39	2	3
ENSPCIP00000002656	RRM_1	PF00076.22	1.1e-39	3	3
ENSPCIP00000002667	RRM_1	PF00076.22	1.1e-39	1	3
ENSPCIP00000002667	RRM_1	PF00076.22	1.1e-39	2	3
ENSPCIP00000002667	RRM_1	PF00076.22	1.1e-39	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCIT00000003340	A1CF-203	1945	-	ENSPCIP00000002667	583 (aa)	XP_020830630	UPI000A280E60
ENSPCIT00000003328	A1CF-202	2022	-	ENSPCIP00000002656	583 (aa)	XP_020830630	UPI000A280E60
ENSPCIT00000003303	A1CF-201	1917	-	ENSPCIP00000002638	548 (aa)	-	-

Gene Model

Click here to download ENSPCIG00000002175's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCIG00000002175's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPCIG00000002175	A1CF	88	53.942	ENSPCIG00000029626	RBM46	93	53.571
ENSPCIG00000002175	A1CF	80	60.714	ENSPCIG00000019374	RBM47	76	60.714
ENSPCIG00000002175	A1CF	55	52.273	ENSPCIG00000007176	SYNCRIP	66	52.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCIG00000002175	A1CF	100	90.971	ENSG00000148584	A1CF	100	94.030	Homo_sapiens
ENSPCIG00000002175	A1CF	100	74.030	ENSAPOG00000008259	a1cf	100	73.187	Acanthochromis_polyacanthus
ENSPCIG00000002175	A1CF	100	87.858	ENSAMEG00000000523	A1CF	100	88.196	Ailuropoda_melanoleuca
ENSPCIG00000002175	A1CF	100	77.190	ENSACIG00000008632	a1cf	100	76.860	Amphilophus_citrinellus
ENSPCIG00000002175	A1CF	100	74.542	ENSAOCG00000023744	a1cf	96	81.449	Amphiprion_ocellaris
ENSPCIG00000002175	A1CF	100	73.399	ENSAPEG00000009537	a1cf	100	73.563	Amphiprion_percula
ENSPCIG00000002175	A1CF	100	77.228	ENSATEG00000013720	a1cf	100	76.898	Anabas_testudineus
ENSPCIG00000002175	A1CF	100	88.494	ENSAPLG00000002964	A1CF	100	88.494	Anas_platyrhynchos
ENSPCIG00000002175	A1CF	100	85.763	ENSACAG00000015269	A1CF	100	85.763	Anolis_carolinensis
ENSPCIG00000002175	A1CF	100	91.482	ENSANAG00000019974	A1CF	100	91.482	Aotus_nancymaae
ENSPCIG00000002175	A1CF	100	74.791	ENSACLG00000017428	a1cf	100	75.292	Astatotilapia_calliptera
ENSPCIG00000002175	A1CF	100	73.719	ENSAMXG00000018180	a1cf	100	72.893	Astyanax_mexicanus
ENSPCIG00000002175	A1CF	100	89.626	ENSBTAG00000021195	A1CF	100	89.626	Bos_taurus
ENSPCIG00000002175	A1CF	100	89.916	ENSCJAG00000005045	A1CF	100	89.916	Callithrix_jacchus
ENSPCIG00000002175	A1CF	100	88.345	ENSCAFG00000015581	A1CF	100	88.682	Canis_familiaris
ENSPCIG00000002175	A1CF	100	88.345	ENSCAFG00020026421	A1CF	98	91.246	Canis_lupus_dingo
ENSPCIG00000002175	A1CF	100	87.752	ENSCHIG00000020411	A1CF	100	87.752	Capra_hircus
ENSPCIG00000002175	A1CF	94	89.855	ENSTSYG00000001755	A1CF	100	90.217	Carlito_syrichta
ENSPCIG00000002175	A1CF	100	79.630	ENSCAPG00000017386	A1CF	100	80.128	Cavia_aperea
ENSPCIG00000002175	A1CF	100	88.571	ENSCPOG00000009807	A1CF	100	88.571	Cavia_porcellus
ENSPCIG00000002175	A1CF	100	89.899	ENSCCAG00000018168	A1CF	100	89.899	Cebus_capucinus
ENSPCIG00000002175	A1CF	100	90.769	ENSCATG00000043715	A1CF	100	90.940	Cercocebus_atys
ENSPCIG00000002175	A1CF	100	88.107	ENSCLAG00000010424	A1CF	100	87.772	Chinchilla_lanigera
ENSPCIG00000002175	A1CF	100	89.882	ENSCSAG00000007032	A1CF	100	90.051	Chlorocebus_sabaeus
ENSPCIG00000002175	A1CF	98	85.420	ENSCHOG00000009089	A1CF	98	85.420	Choloepus_hoffmanni
ENSPCIG00000002175	A1CF	100	88.832	ENSCPBG00000026464	A1CF	100	88.832	Chrysemys_picta_bellii
ENSPCIG00000002175	A1CF	100	89.882	ENSCANG00000038032	A1CF	100	90.051	Colobus_angolensis_palliatus
ENSPCIG00000002175	A1CF	100	86.913	ENSCGRG00001017413	A1cf	100	86.913	Cricetulus_griseus_chok1gshd
ENSPCIG00000002175	A1CF	100	86.242	ENSCGRG00000017332	A1cf	100	86.409	Cricetulus_griseus_crigri
ENSPCIG00000002175	A1CF	100	75.456	ENSCSEG00000002361	a1cf	100	75.124	Cynoglossus_semilaevis
ENSPCIG00000002175	A1CF	100	75.083	ENSCVAG00000010520	a1cf	100	76.733	Cyprinodon_variegatus
ENSPCIG00000002175	A1CF	100	79.831	ENSDARG00000002968	a1cf	100	80.508	Danio_rerio
ENSPCIG00000002175	A1CF	100	88.255	ENSDNOG00000002829	A1CF	100	88.423	Dasypus_novemcinctus
ENSPCIG00000002175	A1CF	82	89.855	ENSETEG00000012527	A1CF	81	89.855	Echinops_telfairi
ENSPCIG00000002175	A1CF	100	88.629	ENSEASG00005012924	A1CF	100	88.629	Equus_asinus_asinus
ENSPCIG00000002175	A1CF	100	88.629	ENSECAG00000010424	A1CF	100	88.629	Equus_caballus
ENSPCIG00000002175	A1CF	78	77.996	ENSEEUG00000000013	A1CF	97	79.148	Erinaceus_europaeus
ENSPCIG00000002175	A1CF	100	78.523	ENSELUG00000003159	a1cf	100	78.523	Esox_lucius
ENSPCIG00000002175	A1CF	100	89.060	ENSFCAG00000011179	A1CF	100	89.402	Felis_catus
ENSPCIG00000002175	A1CF	100	88.508	ENSFALG00000013183	A1CF	100	88.508	Ficedula_albicollis
ENSPCIG00000002175	A1CF	100	88.776	ENSFDAG00000019371	A1CF	100	88.776	Fukomys_damarensis
ENSPCIG00000002175	A1CF	100	69.967	ENSFHEG00000019652	a1cf	96	83.594	Fundulus_heteroclitus
ENSPCIG00000002175	A1CF	100	70.579	ENSGMOG00000018943	a1cf	100	70.248	Gadus_morhua
ENSPCIG00000002175	A1CF	95	87.679	ENSGALG00000003765	A1CF	97	87.679	Gallus_gallus
ENSPCIG00000002175	A1CF	100	72.000	ENSGAFG00000014868	a1cf	100	72.000	Gambusia_affinis
ENSPCIG00000002175	A1CF	100	73.520	ENSGACG00000010241	a1cf	100	73.026	Gasterosteus_aculeatus
ENSPCIG00000002175	A1CF	94	88.889	ENSGAGG00000016508	A1CF	97	88.889	Gopherus_agassizii
ENSPCIG00000002175	A1CF	100	89.580	ENSGGOG00000009670	A1CF	100	89.580	Gorilla_gorilla
ENSPCIG00000002175	A1CF	100	76.364	ENSHBUG00000021959	a1cf	100	76.694	Haplochromis_burtoni
ENSPCIG00000002175	A1CF	100	89.094	ENSHGLG00000008955	A1CF	100	88.591	Heterocephalus_glaber_female
ENSPCIG00000002175	A1CF	100	88.423	ENSHGLG00100000518	A1CF	100	87.919	Heterocephalus_glaber_male
ENSPCIG00000002175	A1CF	95	71.724	ENSHCOG00000017669	a1cf	100	72.431	Hippocampus_comes
ENSPCIG00000002175	A1CF	90	81.530	ENSIPUG00000010367	a1cf	96	80.597	Ictalurus_punctatus
ENSPCIG00000002175	A1CF	100	76.098	ENSKMAG00000006568	a1cf	100	75.122	Kryptolebias_marmoratus
ENSPCIG00000002175	A1CF	99	75.123	ENSLBEG00000020994	a1cf	98	74.959	Labrus_bergylta
ENSPCIG00000002175	A1CF	100	83.106	ENSLACG00000008061	A1CF	100	83.106	Latimeria_chalumnae
ENSPCIG00000002175	A1CF	100	82.857	ENSLOCG00000006302	a1cf	100	82.857	Lepisosteus_oculatus
ENSPCIG00000002175	A1CF	100	88.758	ENSLAFG00000015462	A1CF	100	88.926	Loxodonta_africana
ENSPCIG00000002175	A1CF	100	91.111	ENSMFAG00000035948	A1CF	100	91.282	Macaca_fascicularis
ENSPCIG00000002175	A1CF	100	91.111	ENSMMUG00000007077	A1CF	100	91.282	Macaca_mulatta
ENSPCIG00000002175	A1CF	100	90.769	ENSMNEG00000031454	A1CF	100	90.940	Macaca_nemestrina
ENSPCIG00000002175	A1CF	100	89.545	ENSMLEG00000037223	A1CF	100	89.713	Mandrillus_leucophaeus
ENSPCIG00000002175	A1CF	100	74.959	ENSMAMG00000010402	a1cf	100	75.124	Mastacembelus_armatus
ENSPCIG00000002175	A1CF	100	76.678	ENSMZEG00005013245	a1cf	100	76.007	Maylandia_zebra
ENSPCIG00000002175	A1CF	100	87.500	ENSMGAG00000001507	A1CF	100	87.500	Meleagris_gallopavo
ENSPCIG00000002175	A1CF	100	85.570	ENSMAUG00000007422	A1cf	100	85.738	Mesocricetus_auratus
ENSPCIG00000002175	A1CF	100	89.002	ENSMICG00000003377	A1CF	100	89.171	Microcebus_murinus
ENSPCIG00000002175	A1CF	100	86.409	ENSMOCG00000021536	A1cf	100	86.577	Microtus_ochrogaster
ENSPCIG00000002175	A1CF	100	69.384	ENSMMOG00000009422	a1cf	100	69.717	Mola_mola
ENSPCIG00000002175	A1CF	92	94.413	ENSMODG00000016478	A1CF	99	94.413	Monodelphis_domestica
ENSPCIG00000002175	A1CF	100	73.469	ENSMALG00000012992	a1cf	100	72.959	Monopterus_albus
ENSPCIG00000002175	A1CF	100	86.565	MGP_CAROLIEiJ_G0022873	A1cf	100	86.735	Mus_caroli
ENSPCIG00000002175	A1CF	100	86.565	ENSMUSG00000052595	A1cf	99	90.814	Mus_musculus
ENSPCIG00000002175	A1CF	100	86.565	MGP_PahariEiJ_G0014366	A1cf	100	86.395	Mus_pahari
ENSPCIG00000002175	A1CF	100	86.224	MGP_SPRETEiJ_G0023792	A1cf	100	86.224	Mus_spretus
ENSPCIG00000002175	A1CF	100	83.137	ENSMPUG00000016971	A1CF	100	83.474	Mustela_putorius_furo
ENSPCIG00000002175	A1CF	100	87.584	ENSMLUG00000016071	A1CF	100	87.584	Myotis_lucifugus
ENSPCIG00000002175	A1CF	100	87.416	ENSNGAG00000015136	A1cf	100	87.584	Nannospalax_galili
ENSPCIG00000002175	A1CF	100	76.694	ENSNBRG00000001712	a1cf	100	77.025	Neolamprologus_brichardi
ENSPCIG00000002175	A1CF	100	89.597	ENSNLEG00000012028	A1CF	100	89.765	Nomascus_leucogenys
ENSPCIG00000002175	A1CF	94	97.273	ENSMEUG00000015909	A1CF	100	97.273	Notamacropus_eugenii
ENSPCIG00000002175	A1CF	89	80.038	ENSOPRG00000010667	A1CF	97	79.773	Ochotona_princeps
ENSPCIG00000002175	A1CF	100	77.190	ENSONIG00000019105	a1cf	100	76.694	Oreochromis_niloticus
ENSPCIG00000002175	A1CF	83	91.285	ENSOANG00000007360	A1CF	99	91.285	Ornithorhynchus_anatinus
ENSPCIG00000002175	A1CF	100	88.625	ENSOCUG00000011587	A1CF	100	88.795	Oryctolagus_cuniculus
ENSPCIG00000002175	A1CF	100	74.342	ENSORLG00000013342	a1cf	100	73.311	Oryzias_latipes
ENSPCIG00000002175	A1CF	100	74.959	ENSORLG00020000586	a1cf	100	74.304	Oryzias_latipes_hni
ENSPCIG00000002175	A1CF	100	74.959	ENSORLG00015018569	a1cf	100	74.304	Oryzias_latipes_hsok
ENSPCIG00000002175	A1CF	100	76.285	ENSOMEG00000013531	a1cf	100	75.456	Oryzias_melastigma
ENSPCIG00000002175	A1CF	100	88.533	ENSOGAG00000012884	A1CF	100	88.870	Otolemur_garnettii
ENSPCIG00000002175	A1CF	100	88.087	ENSOARG00000013695	A1CF	100	88.087	Ovis_aries
ENSPCIG00000002175	A1CF	97	88.042	ENSPPAG00000028115	A1CF	100	91.919	Pan_paniscus
ENSPCIG00000002175	A1CF	100	88.196	ENSPPRG00000012180	A1CF	100	88.533	Panthera_pardus
ENSPCIG00000002175	A1CF	100	88.196	ENSPTIG00000021223	A1CF	100	88.533	Panthera_tigris_altaica
ENSPCIG00000002175	A1CF	100	90.971	ENSPTRG00000002508	A1CF	100	90.971	Pan_troglodytes
ENSPCIG00000002175	A1CF	100	91.111	ENSPANG00000021988	A1CF	100	91.282	Papio_anubis
ENSPCIG00000002175	A1CF	100	80.067	ENSPKIG00000025176	a1cf	100	79.564	Paramormyrops_kingsleyae
ENSPCIG00000002175	A1CF	100	89.708	ENSPSIG00000010318	A1CF	100	89.708	Pelodiscus_sinensis
ENSPCIG00000002175	A1CF	98	67.247	ENSPMGG00000013359	a1cf	89	72.973	Periophthalmus_magnuspinnatus
ENSPCIG00000002175	A1CF	100	87.081	ENSPEMG00000015021	A1cf	100	86.745	Peromyscus_maniculatus_bairdii
ENSPCIG00000002175	A1CF	100	74.756	ENSPFOG00000006683	a1cf	100	76.384	Poecilia_formosa
ENSPCIG00000002175	A1CF	100	74.593	ENSPFOG00000007437	-	100	76.221	Poecilia_formosa
ENSPCIG00000002175	A1CF	100	75.578	ENSPLAG00000001210	-	100	77.228	Poecilia_latipinna
ENSPCIG00000002175	A1CF	100	75.578	ENSPLAG00000000026	a1cf	100	77.228	Poecilia_latipinna
ENSPCIG00000002175	A1CF	100	68.212	ENSPMEG00000000921	a1cf	100	69.868	Poecilia_mexicana
ENSPCIG00000002175	A1CF	100	67.320	ENSPMEG00000015529	-	100	68.954	Poecilia_mexicana
ENSPCIG00000002175	A1CF	100	74.430	ENSPREG00000016298	a1cf	100	76.059	Poecilia_reticulata
ENSPCIG00000002175	A1CF	100	90.986	ENSPPYG00000002819	A1CF	100	91.156	Pongo_abelii
ENSPCIG00000002175	A1CF	79	70.753	ENSPCAG00000006463	A1CF	68	88.889	Procavia_capensis
ENSPCIG00000002175	A1CF	100	88.107	ENSPCOG00000024172	A1CF	100	88.275	Propithecus_coquereli
ENSPCIG00000002175	A1CF	100	75.530	ENSPNYG00000017944	a1cf	100	75.856	Pundamilia_nyererei
ENSPCIG00000002175	A1CF	100	80.872	ENSPNAG00000007704	a1cf	100	80.034	Pygocentrus_nattereri
ENSPCIG00000002175	A1CF	100	86.565	ENSRNOG00000033195	A1cf	100	86.735	Rattus_norvegicus
ENSPCIG00000002175	A1CF	100	83.697	ENSRBIG00000042892	A1CF	100	89.621	Rhinopithecus_bieti
ENSPCIG00000002175	A1CF	100	89.882	ENSRROG00000041398	A1CF	100	90.051	Rhinopithecus_roxellana
ENSPCIG00000002175	A1CF	100	89.765	ENSSBOG00000021930	A1CF	100	90.079	Saimiri_boliviensis_boliviensis
ENSPCIG00000002175	A1CF	100	95.043	ENSSHAG00000005096	A1CF	100	95.043	Sarcophilus_harrisii
ENSPCIG00000002175	A1CF	100	80.336	ENSSFOG00015011774	a1cf	100	79.832	Scleropages_formosus
ENSPCIG00000002175	A1CF	100	73.779	ENSSMAG00000013271	a1cf	100	73.290	Scophthalmus_maximus
ENSPCIG00000002175	A1CF	100	75.662	ENSSDUG00000013930	a1cf	100	75.000	Seriola_dumerili
ENSPCIG00000002175	A1CF	100	71.212	ENSSLDG00000004290	a1cf	100	70.539	Seriola_lalandi_dorsalis
ENSPCIG00000002175	A1CF	95	79.428	ENSSARG00000005940	A1CF	96	79.785	Sorex_araneus
ENSPCIG00000002175	A1CF	95	85.816	ENSSPUG00000006797	A1CF	95	85.284	Sphenodon_punctatus
ENSPCIG00000002175	A1CF	100	88.926	ENSSSCG00000010431	A1CF	100	88.926	Sus_scrofa
ENSPCIG00000002175	A1CF	100	86.455	ENSTGUG00000005090	A1CF	100	86.288	Taeniopygia_guttata
ENSPCIG00000002175	A1CF	100	73.409	ENSTRUG00000001982	a1cf	100	73.409	Takifugu_rubripes
ENSPCIG00000002175	A1CF	100	74.309	ENSTNIG00000003580	a1cf	100	74.309	Tetraodon_nigroviridis
ENSPCIG00000002175	A1CF	97	83.509	ENSTTRG00000013190	A1CF	95	83.509	Tursiops_truncatus
ENSPCIG00000002175	A1CF	100	89.231	ENSUAMG00000020065	A1CF	100	89.402	Ursus_americanus
ENSPCIG00000002175	A1CF	100	88.325	ENSUMAG00000011162	A1CF	100	88.325	Ursus_maritimus
ENSPCIG00000002175	A1CF	87	86.187	ENSVPAG00000006130	A1CF	86	86.187	Vicugna_pacos
ENSPCIG00000002175	A1CF	100	89.897	ENSVVUG00000002504	A1CF	100	90.068	Vulpes_vulpes
ENSPCIG00000002175	A1CF	100	77.143	ENSXETG00000006611	a1cf	100	77.143	Xenopus_tropicalis
ENSPCIG00000002175	A1CF	100	77.409	ENSXCOG00000003302	a1cf	100	77.741	Xiphophorus_couchianus
ENSPCIG00000002175	A1CF	100	76.393	ENSXMAG00000016703	a1cf	100	76.721	Xiphophorus_maculatus