EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPCIG00000003786 (Gene tree)
Gene ID: 110206845
Gene Symbol: SMG7
Alias: -
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Phascolarctos_cinereus
Status: putative
Strand: Plus strand
Length: 104249 bases
Position: chrFUWB01000043.1:796506-900754
Accession: 110206845
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCIP00000004583	EST1	PF10374.9	3.9e-25	1	1
ENSPCIP00000004575	EST1	PF10374.9	4.1e-25	1	1
ENSPCIP00000004566	EST1	PF10374.9	4.5e-25	1	1
ENSPCIP00000004587	EST1	PF10374.9	6.5e-23	1	1
ENSPCIP00000004583	EST1_DNA_bind	PF10373.9	7.5e-55	1	1
ENSPCIP00000004575	EST1_DNA_bind	PF10373.9	7.8e-55	1	1
ENSPCIP00000004566	EST1_DNA_bind	PF10373.9	8.4e-55	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCIT00000005726	SMG7-203	3754	-	ENSPCIP00000004583	1110 (aa)	-	-
ENSPCIT00000005718	SMG7-202	3835	-	ENSPCIP00000004575	1137 (aa)	-	-
ENSPCIT00000005708	SMG7-201	3985	-	ENSPCIP00000004566	1187 (aa)	XP_020840036	UPI000A280776
ENSPCIT00000005730	SMG7-204	1225	-	ENSPCIP00000004587	180 (aa)	-	-

Gene Model

Click here to download ENSPCIG00000003786's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCIG00000003786's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCIG00000003786	SMG7	100	93.409	ENSG00000116698	SMG7	100	93.630	Homo_sapiens
ENSPCIG00000003786	SMG7	87	93.590	ENSAPOG00000009611	smg7	94	74.887	Acanthochromis_polyacanthus
ENSPCIG00000003786	SMG7	99	91.947	ENSAMEG00000002357	SMG7	100	92.059	Ailuropoda_melanoleuca
ENSPCIG00000003786	SMG7	72	93.846	ENSACIG00000015152	smg7	100	64.920	Amphilophus_citrinellus
ENSPCIG00000003786	SMG7	89	93.750	ENSAOCG00000013538	smg7	99	67.436	Amphiprion_ocellaris
ENSPCIG00000003786	SMG7	89	93.750	ENSAPEG00000007851	smg7	99	67.577	Amphiprion_percula
ENSPCIG00000003786	SMG7	89	93.750	ENSATEG00000006931	smg7	99	66.553	Anabas_testudineus
ENSPCIG00000003786	SMG7	100	89.239	ENSAPLG00000015811	SMG7	100	89.239	Anas_platyrhynchos
ENSPCIG00000003786	SMG7	100	87.803	ENSACAG00000014989	SMG7	100	88.304	Anolis_carolinensis
ENSPCIG00000003786	SMG7	100	93.519	ENSANAG00000028114	SMG7	100	93.687	Aotus_nancymaae
ENSPCIG00000003786	SMG7	89	93.750	ENSACLG00000022079	smg7	94	71.154	Astatotilapia_calliptera
ENSPCIG00000003786	SMG7	89	93.125	ENSAMXG00000020809	smg7	99	67.943	Astyanax_mexicanus
ENSPCIG00000003786	SMG7	100	92.091	ENSBTAG00000008003	SMG7	100	92.267	Bos_taurus
ENSPCIG00000003786	SMG7	100	93.322	ENSCJAG00000005135	SMG7	100	93.322	Callithrix_jacchus
ENSPCIG00000003786	SMG7	99	90.909	ENSCAFG00000013276	SMG7	97	89.322	Canis_familiaris
ENSPCIG00000003786	SMG7	99	92.470	ENSCAFG00020015475	SMG7	99	92.633	Canis_lupus_dingo
ENSPCIG00000003786	SMG7	99	90.909	ENSCHIG00000018192	SMG7	99	88.823	Capra_hircus
ENSPCIG00000003786	SMG7	100	92.970	ENSTSYG00000002667	SMG7	100	92.970	Carlito_syrichta
ENSPCIG00000003786	SMG7	99	92.424	ENSCPOG00000008906	SMG7	99	88.390	Cavia_porcellus
ENSPCIG00000003786	SMG7	100	93.497	ENSCCAG00000028596	SMG7	100	93.717	Cebus_capucinus
ENSPCIG00000003786	SMG7	100	93.497	ENSCATG00000011063	SMG7	100	93.717	Cercocebus_atys
ENSPCIG00000003786	SMG7	100	92.179	ENSCLAG00000010751	SMG7	100	92.179	Chinchilla_lanigera
ENSPCIG00000003786	SMG7	99	91.919	ENSCSAG00000012654	SMG7	97	90.169	Chlorocebus_sabaeus
ENSPCIG00000003786	SMG7	91	88.957	ENSCHOG00000010522	SMG7	87	89.571	Choloepus_hoffmanni
ENSPCIG00000003786	SMG7	100	92.929	ENSCPBG00000015724	SMG7	100	92.359	Chrysemys_picta_bellii
ENSPCIG00000003786	SMG7	87	51.829	ENSCING00000006953	-	94	53.420	Ciona_intestinalis
ENSPCIG00000003786	SMG7	99	93.357	ENSCANG00000015680	SMG7	100	93.630	Colobus_angolensis_palliatus
ENSPCIG00000003786	SMG7	100	91.652	ENSCGRG00001013705	Smg7	100	91.652	Cricetulus_griseus_chok1gshd
ENSPCIG00000003786	SMG7	99	91.578	ENSCGRG00000018401	Smg7	100	91.578	Cricetulus_griseus_crigri
ENSPCIG00000003786	SMG7	84	90.789	ENSCSEG00000007392	-	88	89.103	Cynoglossus_semilaevis
ENSPCIG00000003786	SMG7	82	88.591	ENSCVAG00000011842	smg7	99	69.500	Cyprinodon_variegatus
ENSPCIG00000003786	SMG7	89	94.375	ENSDARG00000060767	smg7	99	67.606	Danio_rerio
ENSPCIG00000003786	SMG7	100	89.394	ENSDORG00000007331	Smg7	100	89.226	Dipodomys_ordii
ENSPCIG00000003786	SMG7	92	97.576	ENSETEG00000002654	SMG7	100	88.966	Echinops_telfairi
ENSPCIG00000003786	SMG7	100	91.414	ENSEASG00005006524	SMG7	100	90.152	Equus_asinus_asinus
ENSPCIG00000003786	SMG7	96	97.872	ENSECAG00000004313	SMG7	97	97.583	Equus_caballus
ENSPCIG00000003786	SMG7	97	89.441	ENSEEUG00000002024	SMG7	94	88.628	Erinaceus_europaeus
ENSPCIG00000003786	SMG7	89	93.125	ENSELUG00000010293	smg7	99	67.241	Esox_lucius
ENSPCIG00000003786	SMG7	100	91.919	ENSFCAG00000010900	SMG7	100	91.919	Felis_catus
ENSPCIG00000003786	SMG7	98	88.945	ENSFALG00000003047	SMG7	100	86.650	Ficedula_albicollis
ENSPCIG00000003786	SMG7	99	91.414	ENSFDAG00000012121	SMG7	99	89.735	Fukomys_damarensis
ENSPCIG00000003786	SMG7	89	90.625	ENSFHEG00000011073	smg7	99	65.039	Fundulus_heteroclitus
ENSPCIG00000003786	SMG7	89	91.250	ENSGMOG00000004916	smg7	88	75.000	Gadus_morhua
ENSPCIG00000003786	SMG7	100	89.248	ENSGALG00000004667	SMG7	100	89.248	Gallus_gallus
ENSPCIG00000003786	SMG7	89	90.683	ENSGAFG00000019000	smg7	99	64.721	Gambusia_affinis
ENSPCIG00000003786	SMG7	89	92.500	ENSGACG00000001634	smg7	99	64.374	Gasterosteus_aculeatus
ENSPCIG00000003786	SMG7	84	100.000	ENSGAGG00000024208	-	81	100.000	Gopherus_agassizii
ENSPCIG00000003786	SMG7	100	93.234	ENSGGOG00000002342	SMG7	100	93.455	Gorilla_gorilla
ENSPCIG00000003786	SMG7	89	93.750	ENSHBUG00000003726	smg7	97	73.096	Haplochromis_burtoni
ENSPCIG00000003786	SMG7	100	92.794	ENSHGLG00000009353	SMG7	100	92.970	Heterocephalus_glaber_female
ENSPCIG00000003786	SMG7	92	92.727	ENSHGLG00100004878	-	100	82.660	Heterocephalus_glaber_male
ENSPCIG00000003786	SMG7	100	92.707	ENSHGLG00100009637	-	100	92.882	Heterocephalus_glaber_male
ENSPCIG00000003786	SMG7	84	87.582	ENSHCOG00000012804	-	82	88.889	Hippocampus_comes
ENSPCIG00000003786	SMG7	89	93.125	ENSIPUG00000016997	smg7	99	68.813	Ictalurus_punctatus
ENSPCIG00000003786	SMG7	100	93.434	ENSSTOG00000000401	SMG7	100	90.657	Ictidomys_tridecemlineatus
ENSPCIG00000003786	SMG7	86	84.416	ENSJJAG00000000309	-	86	84.416	Jaculus_jaculus
ENSPCIG00000003786	SMG7	92	97.576	ENSJJAG00000012351	Smg7	100	88.805	Jaculus_jaculus
ENSPCIG00000003786	SMG7	71	95.312	ENSKMAG00000004900	smg7	97	72.000	Kryptolebias_marmoratus
ENSPCIG00000003786	SMG7	54	62.667	ENSLBEG00000005220	-	75	62.667	Labrus_bergylta
ENSPCIG00000003786	SMG7	87	92.308	ENSLBEG00000002983	smg7	99	66.667	Labrus_bergylta
ENSPCIG00000003786	SMG7	89	93.750	ENSLACG00000000972	SMG7	99	75.390	Latimeria_chalumnae
ENSPCIG00000003786	SMG7	91	91.515	ENSLOCG00000002010	smg7	93	77.778	Lepisosteus_oculatus
ENSPCIG00000003786	SMG7	99	91.414	ENSLAFG00000008186	SMG7	99	89.992	Loxodonta_africana
ENSPCIG00000003786	SMG7	100	92.424	ENSMFAG00000031653	SMG7	100	93.630	Macaca_fascicularis
ENSPCIG00000003786	SMG7	99	92.881	ENSMMUG00000018458	SMG7	99	93.051	Macaca_mulatta
ENSPCIG00000003786	SMG7	100	93.497	ENSMNEG00000034798	SMG7	100	93.717	Macaca_nemestrina
ENSPCIG00000003786	SMG7	100	93.497	ENSMLEG00000037170	SMG7	100	93.717	Mandrillus_leucophaeus
ENSPCIG00000003786	SMG7	89	93.125	ENSMAMG00000018733	smg7	84	66.132	Mastacembelus_armatus
ENSPCIG00000003786	SMG7	89	93.750	ENSMZEG00005015247	smg7	94	71.154	Maylandia_zebra
ENSPCIG00000003786	SMG7	97	89.128	ENSMGAG00000001561	SMG7	98	89.128	Meleagris_gallopavo
ENSPCIG00000003786	SMG7	100	91.564	ENSMAUG00000019484	Smg7	100	91.740	Mesocricetus_auratus
ENSPCIG00000003786	SMG7	100	93.585	ENSMICG00000007145	SMG7	100	93.146	Microcebus_murinus
ENSPCIG00000003786	SMG7	100	91.301	ENSMOCG00000020748	Smg7	100	91.476	Microtus_ochrogaster
ENSPCIG00000003786	SMG7	87	91.026	ENSMMOG00000001524	smg7	99	65.421	Mola_mola
ENSPCIG00000003786	SMG7	92	97.531	ENSMODG00000007139	SMG7	99	97.531	Monodelphis_domestica
ENSPCIG00000003786	SMG7	88	93.711	ENSMALG00000000061	smg7	93	70.647	Monopterus_albus
ENSPCIG00000003786	SMG7	100	91.213	MGP_CAROLIEiJ_G0014704	Smg7	100	91.125	Mus_caroli
ENSPCIG00000003786	SMG7	100	91.213	ENSMUSG00000042772	Smg7	100	91.388	Mus_musculus
ENSPCIG00000003786	SMG7	100	91.301	MGP_PahariEiJ_G0027940	Smg7	100	91.476	Mus_pahari
ENSPCIG00000003786	SMG7	100	91.301	MGP_SPRETEiJ_G0015511	Smg7	100	91.476	Mus_spretus
ENSPCIG00000003786	SMG7	98	90.909	ENSMPUG00000011732	SMG7	97	89.136	Mustela_putorius_furo
ENSPCIG00000003786	SMG7	99	90.909	ENSMLUG00000015417	SMG7	99	89.915	Myotis_lucifugus
ENSPCIG00000003786	SMG7	100	92.355	ENSNGAG00000009836	Smg7	100	91.828	Nannospalax_galili
ENSPCIG00000003786	SMG7	98	61.097	ENSNBRG00000024343	smg7	98	70.952	Neolamprologus_brichardi
ENSPCIG00000003786	SMG7	100	93.585	ENSNLEG00000018018	SMG7	100	93.805	Nomascus_leucogenys
ENSPCIG00000003786	SMG7	72	98.780	ENSMEUG00000004681	SMG7	73	98.780	Notamacropus_eugenii
ENSPCIG00000003786	SMG7	87	96.154	ENSOPRG00000013942	SMG7	96	78.984	Ochotona_princeps
ENSPCIG00000003786	SMG7	100	92.619	ENSODEG00000010390	SMG7	100	92.619	Octodon_degus
ENSPCIG00000003786	SMG7	89	93.750	ENSONIG00000000277	smg7	99	65.925	Oreochromis_niloticus
ENSPCIG00000003786	SMG7	98	93.434	ENSOANG00000000994	SMG7	100	88.586	Ornithorhynchus_anatinus
ENSPCIG00000003786	SMG7	87	96.178	ENSOCUG00000005887	SMG7	92	83.898	Oryctolagus_cuniculus
ENSPCIG00000003786	SMG7	89	91.250	ENSORLG00000007314	smg7	70	93.377	Oryzias_latipes
ENSPCIG00000003786	SMG7	89	91.250	ENSORLG00020015779	smg7	99	64.404	Oryzias_latipes_hni
ENSPCIG00000003786	SMG7	89	91.250	ENSORLG00015012289	smg7	99	64.317	Oryzias_latipes_hsok
ENSPCIG00000003786	SMG7	89	91.250	ENSOMEG00000002328	smg7	99	63.967	Oryzias_melastigma
ENSPCIG00000003786	SMG7	97	90.683	ENSOGAG00000003107	SMG7	94	88.087	Otolemur_garnettii
ENSPCIG00000003786	SMG7	99	90.404	ENSOARG00000001352	SMG7	100	88.393	Ovis_aries
ENSPCIG00000003786	SMG7	100	93.497	ENSPPAG00000031619	SMG7	100	93.717	Pan_paniscus
ENSPCIG00000003786	SMG7	100	93.058	ENSPPRG00000011222	SMG7	100	92.970	Panthera_pardus
ENSPCIG00000003786	SMG7	96	93.019	ENSPTIG00000007242	SMG7	100	92.932	Panthera_tigris_altaica
ENSPCIG00000003786	SMG7	100	93.497	ENSPTRG00000001764	SMG7	100	93.717	Pan_troglodytes
ENSPCIG00000003786	SMG7	100	93.497	ENSPANG00000004520	SMG7	100	93.673	Papio_anubis
ENSPCIG00000003786	SMG7	88	91.824	ENSPKIG00000007242	smg7	99	67.822	Paramormyrops_kingsleyae
ENSPCIG00000003786	SMG7	98	90.893	ENSPSIG00000012201	SMG7	100	90.804	Pelodiscus_sinensis
ENSPCIG00000003786	SMG7	71	43.223	ENSPMGG00000021833	smg7	89	56.219	Periophthalmus_magnuspinnatus
ENSPCIG00000003786	SMG7	86	87.097	ENSPMGG00000002179	-	90	83.951	Periophthalmus_magnuspinnatus
ENSPCIG00000003786	SMG7	100	90.404	ENSPEMG00000011315	Smg7	100	88.721	Peromyscus_maniculatus_bairdii
ENSPCIG00000003786	SMG7	89	91.250	ENSPFOG00000019219	smg7	99	64.667	Poecilia_formosa
ENSPCIG00000003786	SMG7	89	91.250	ENSPLAG00000001446	smg7	99	64.666	Poecilia_latipinna
ENSPCIG00000003786	SMG7	89	91.250	ENSPMEG00000005218	smg7	99	64.039	Poecilia_mexicana
ENSPCIG00000003786	SMG7	89	90.625	ENSPREG00000019039	smg7	91	62.535	Poecilia_reticulata
ENSPCIG00000003786	SMG7	100	93.585	ENSPPYG00000000427	SMG7	100	93.761	Pongo_abelii
ENSPCIG00000003786	SMG7	95	89.441	ENSPCAG00000008360	SMG7	94	79.576	Procavia_capensis
ENSPCIG00000003786	SMG7	99	91.919	ENSPCOG00000011996	SMG7	100	89.543	Propithecus_coquereli
ENSPCIG00000003786	SMG7	90	94.444	ENSPVAG00000000851	SMG7	89	84.158	Pteropus_vampyrus
ENSPCIG00000003786	SMG7	89	93.750	ENSPNYG00000007643	smg7	99	66.179	Pundamilia_nyererei
ENSPCIG00000003786	SMG7	89	93.750	ENSPNAG00000011374	smg7	98	71.717	Pygocentrus_nattereri
ENSPCIG00000003786	SMG7	100	91.396	ENSRNOG00000027962	Smg7	100	91.543	Rattus_norvegicus
ENSPCIG00000003786	SMG7	100	93.409	ENSRBIG00000036316	SMG7	100	93.630	Rhinopithecus_bieti
ENSPCIG00000003786	SMG7	100	93.409	ENSRROG00000035719	SMG7	100	93.630	Rhinopithecus_roxellana
ENSPCIG00000003786	SMG7	100	90.404	ENSSBOG00000023454	SMG7	100	93.455	Saimiri_boliviensis_boliviensis
ENSPCIG00000003786	SMG7	100	97.627	ENSSHAG00000013147	SMG7	100	97.627	Sarcophilus_harrisii
ENSPCIG00000003786	SMG7	89	92.500	ENSSFOG00015017252	smg7	99	75.916	Scleropages_formosus
ENSPCIG00000003786	SMG7	89	93.750	ENSSMAG00000006067	smg7	99	66.336	Scophthalmus_maximus
ENSPCIG00000003786	SMG7	89	93.750	ENSSDUG00000017543	smg7	99	66.188	Seriola_dumerili
ENSPCIG00000003786	SMG7	87	95.513	ENSSLDG00000003750	-	95	94.304	Seriola_lalandi_dorsalis
ENSPCIG00000003786	SMG7	99	90.194	ENSSPUG00000002064	SMG7	99	90.194	Sphenodon_punctatus
ENSPCIG00000003786	SMG7	92	84.848	ENSSPAG00000008733	smg7	100	66.323	Stegastes_partitus
ENSPCIG00000003786	SMG7	100	90.404	ENSSSCG00000015558	SMG7	100	89.983	Sus_scrofa
ENSPCIG00000003786	SMG7	99	89.515	ENSTGUG00000003928	SMG7	100	89.515	Taeniopygia_guttata
ENSPCIG00000003786	SMG7	84	88.889	ENSTRUG00000003612	-	84	88.889	Takifugu_rubripes
ENSPCIG00000003786	SMG7	89	88.820	ENSTNIG00000002802	smg7	99	61.808	Tetraodon_nigroviridis
ENSPCIG00000003786	SMG7	78	92.827	ENSTBEG00000003220	SMG7	75	92.827	Tupaia_belangeri
ENSPCIG00000003786	SMG7	96	89.142	ENSTTRG00000014778	SMG7	94	89.317	Tursiops_truncatus
ENSPCIG00000003786	SMG7	96	88.504	ENSUAMG00000017473	SMG7	100	88.595	Ursus_americanus
ENSPCIG00000003786	SMG7	96	90.909	ENSUMAG00000016389	SMG7	100	88.918	Ursus_maritimus
ENSPCIG00000003786	SMG7	100	90.909	ENSVVUG00000008976	SMG7	100	91.919	Vulpes_vulpes
ENSPCIG00000003786	SMG7	92	91.515	ENSXETG00000012528	smg7	100	71.453	Xenopus_tropicalis
ENSPCIG00000003786	SMG7	89	91.875	ENSXMAG00000007123	smg7	99	64.948	Xiphophorus_maculatus