EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPCIG00000006156 (Gene tree)
Gene ID: 110223386
Gene Symbol: UPF1
Alias: -
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Phascolarctos_cinereus
Status: putative
Strand: Minus strand
Length: 61844 bases
Position: chrFUWB01000304.1:1068883-1130726
Accession: 110223386
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCIP00000007258	UPF1_Zn_bind	PF09416.10	8.9e-75	1	1
ENSPCIP00000007258	ResIII	PF04851.15	3.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCIT00000009198	UPF1-201	3456	-	ENSPCIP00000007258	1118 (aa)	XP_020864535	UPI000A28134B

Gene Model

Click here to download ENSPCIG00000006156's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCIG00000006156's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCIG00000006156	UPF1	100	98.660	ENSG00000005007	UPF1	100	98.660	Homo_sapiens
ENSPCIG00000006156	UPF1	100	91.808	ENSAPOG00000023773	upf1	100	91.897	Acanthochromis_polyacanthus
ENSPCIG00000006156	UPF1	100	92.768	ENSAPOG00000010916	-	100	92.768	Acanthochromis_polyacanthus
ENSPCIG00000006156	UPF1	100	96.823	ENSAMEG00000011474	UPF1	100	96.823	Ailuropoda_melanoleuca
ENSPCIG00000006156	UPF1	92	94.829	ENSACIG00000010985	-	100	94.927	Amphilophus_citrinellus
ENSPCIG00000006156	UPF1	100	92.039	ENSACIG00000019949	upf1	100	91.986	Amphilophus_citrinellus
ENSPCIG00000006156	UPF1	100	91.324	ENSAOCG00000018519	upf1	100	91.887	Amphiprion_ocellaris
ENSPCIG00000006156	UPF1	100	92.768	ENSAOCG00000006352	-	100	92.768	Amphiprion_ocellaris
ENSPCIG00000006156	UPF1	100	91.324	ENSAPEG00000016344	upf1	100	91.887	Amphiprion_percula
ENSPCIG00000006156	UPF1	100	92.768	ENSAPEG00000006292	-	100	92.768	Amphiprion_percula
ENSPCIG00000006156	UPF1	100	90.669	ENSATEG00000017867	upf1	100	91.461	Anabas_testudineus
ENSPCIG00000006156	UPF1	100	92.946	ENSATEG00000016606	-	100	92.946	Anabas_testudineus
ENSPCIG00000006156	UPF1	93	98.672	ENSAPLG00000009175	UPF1	100	98.672	Anas_platyrhynchos
ENSPCIG00000006156	UPF1	98	92.889	ENSANAG00000024107	UPF1	99	92.889	Aotus_nancymaae
ENSPCIG00000006156	UPF1	100	92.500	ENSACLG00000022630	-	100	92.411	Astatotilapia_calliptera
ENSPCIG00000006156	UPF1	100	91.771	ENSACLG00000007181	upf1	100	91.719	Astatotilapia_calliptera
ENSPCIG00000006156	UPF1	100	93.399	ENSAMXG00000042187	upf1	100	93.845	Astyanax_mexicanus
ENSPCIG00000006156	UPF1	100	97.609	ENSBTAG00000020922	UPF1	100	97.609	Bos_taurus
ENSPCIG00000006156	UPF1	89	50.639	WBGene00004880	smg-2	95	48.690	Caenorhabditis_elegans
ENSPCIG00000006156	UPF1	100	97.699	ENSCJAG00000019627	UPF1	100	97.699	Callithrix_jacchus
ENSPCIG00000006156	UPF1	100	97.788	ENSCAFG00000014578	UPF1	100	97.788	Canis_familiaris
ENSPCIG00000006156	UPF1	100	98.749	ENSCAFG00020012347	UPF1	100	98.749	Canis_lupus_dingo
ENSPCIG00000006156	UPF1	100	98.569	ENSCHIG00000011018	UPF1	100	98.569	Capra_hircus
ENSPCIG00000006156	UPF1	95	96.375	ENSTSYG00000008877	UPF1	99	96.375	Carlito_syrichta
ENSPCIG00000006156	UPF1	93	97.431	ENSCAPG00000005758	UPF1	95	97.431	Cavia_aperea
ENSPCIG00000006156	UPF1	100	95.398	ENSCPOG00000025463	UPF1	100	95.398	Cavia_porcellus
ENSPCIG00000006156	UPF1	100	98.660	ENSCCAG00000032175	UPF1	100	98.660	Cebus_capucinus
ENSPCIG00000006156	UPF1	93	98.092	ENSCATG00000040306	UPF1	98	98.092	Cercocebus_atys
ENSPCIG00000006156	UPF1	96	96.307	ENSCLAG00000004037	UPF1	99	97.812	Chinchilla_lanigera
ENSPCIG00000006156	UPF1	100	98.660	ENSCSAG00000005276	UPF1	100	98.660	Chlorocebus_sabaeus
ENSPCIG00000006156	UPF1	100	97.770	ENSCPBG00000012513	UPF1	100	97.770	Chrysemys_picta_bellii
ENSPCIG00000006156	UPF1	78	78.121	ENSCING00000021399	-	99	78.121	Ciona_intestinalis
ENSPCIG00000006156	UPF1	99	71.883	ENSCSAVG00000006533	-	99	71.883	Ciona_savignyi
ENSPCIG00000006156	UPF1	95	97.012	ENSCANG00000029819	UPF1	99	97.012	Colobus_angolensis_palliatus
ENSPCIG00000006156	UPF1	100	97.943	ENSCGRG00001021067	Upf1	100	97.943	Cricetulus_griseus_chok1gshd
ENSPCIG00000006156	UPF1	95	96.262	ENSCGRG00000013480	Upf1	99	96.262	Cricetulus_griseus_crigri
ENSPCIG00000006156	UPF1	100	86.607	ENSCSEG00000017239	upf1	100	86.786	Cynoglossus_semilaevis
ENSPCIG00000006156	UPF1	100	93.029	ENSCSEG00000016159	-	100	92.940	Cynoglossus_semilaevis
ENSPCIG00000006156	UPF1	100	92.679	ENSCVAG00000010561	upf1	100	92.589	Cyprinodon_variegatus
ENSPCIG00000006156	UPF1	100	93.488	ENSDARG00000016302	upf1	100	93.934	Danio_rerio
ENSPCIG00000006156	UPF1	95	93.925	ENSDORG00000009984	Upf1	95	94.962	Dipodomys_ordii
ENSPCIG00000006156	UPF1	85	70.941	FBgn0030354	Upf1	84	67.926	Drosophila_melanogaster
ENSPCIG00000006156	UPF1	55	85.413	ENSEBUG00000010069	upf1	96	85.575	Eptatretus_burgeri
ENSPCIG00000006156	UPF1	100	98.479	ENSEASG00005006549	UPF1	100	98.479	Equus_asinus_asinus
ENSPCIG00000006156	UPF1	100	98.479	ENSECAG00000010639	UPF1	100	98.479	Equus_caballus
ENSPCIG00000006156	UPF1	100	92.014	ENSELUG00000012916	-	100	91.933	Esox_lucius
ENSPCIG00000006156	UPF1	100	90.853	ENSELUG00000020917	upf1	100	91.030	Esox_lucius
ENSPCIG00000006156	UPF1	100	97.699	ENSFCAG00000009757	UPF1	100	97.699	Felis_catus
ENSPCIG00000006156	UPF1	96	97.588	ENSFALG00000009312	UPF1	99	97.588	Ficedula_albicollis
ENSPCIG00000006156	UPF1	97	95.055	ENSFDAG00000014816	UPF1	99	97.716	Fukomys_damarensis
ENSPCIG00000006156	UPF1	85	95.262	ENSFHEG00000016276	-	96	95.262	Fundulus_heteroclitus
ENSPCIG00000006156	UPF1	100	88.909	ENSFHEG00000006428	upf1	100	88.909	Fundulus_heteroclitus
ENSPCIG00000006156	UPF1	100	91.335	ENSGMOG00000007541	upf1	100	91.777	Gadus_morhua
ENSPCIG00000006156	UPF1	100	98.302	ENSGALG00000003220	UPF1	100	98.302	Gallus_gallus
ENSPCIG00000006156	UPF1	100	92.493	ENSGAFG00000004831	upf1	100	92.404	Gambusia_affinis
ENSPCIG00000006156	UPF1	62	95.533	ENSGAFG00000015443	-	85	95.533	Gambusia_affinis
ENSPCIG00000006156	UPF1	100	98.211	ENSGAGG00000022217	UPF1	100	98.211	Gopherus_agassizii
ENSPCIG00000006156	UPF1	93	99.038	ENSGGOG00000002608	UPF1	99	99.038	Gorilla_gorilla
ENSPCIG00000006156	UPF1	90	87.356	ENSHBUG00000014694	upf1	100	87.356	Haplochromis_burtoni
ENSPCIG00000006156	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSPCIG00000006156	UPF1	100	97.168	ENSHGLG00000010900	UPF1	100	97.168	Heterocephalus_glaber_female
ENSPCIG00000006156	UPF1	96	93.658	ENSHGLG00100005904	UPF1	99	93.658	Heterocephalus_glaber_male
ENSPCIG00000006156	UPF1	100	91.778	ENSHCOG00000008918	upf1	100	93.810	Hippocampus_comes
ENSPCIG00000006156	UPF1	100	93.577	ENSIPUG00000005108	UPF1	100	93.934	Ictalurus_punctatus
ENSPCIG00000006156	UPF1	100	98.481	ENSSTOG00000009196	UPF1	100	98.481	Ictidomys_tridecemlineatus
ENSPCIG00000006156	UPF1	100	96.368	ENSJJAG00000023151	Upf1	100	96.280	Jaculus_jaculus
ENSPCIG00000006156	UPF1	100	92.768	ENSKMAG00000004962	upf1	100	92.679	Kryptolebias_marmoratus
ENSPCIG00000006156	UPF1	100	89.947	ENSLBEG00000014862	upf1	100	91.093	Labrus_bergylta
ENSPCIG00000006156	UPF1	100	92.507	ENSLBEG00000027848	-	100	92.507	Labrus_bergylta
ENSPCIG00000006156	UPF1	62	97.561	ENSLACG00000008482	UPF1	100	97.561	Latimeria_chalumnae
ENSPCIG00000006156	UPF1	100	95.442	ENSLOCG00000002072	upf1	100	95.442	Lepisosteus_oculatus
ENSPCIG00000006156	UPF1	100	97.080	ENSLAFG00000014963	UPF1	100	97.080	Loxodonta_africana
ENSPCIG00000006156	UPF1	100	97.699	ENSMFAG00000037748	UPF1	100	97.699	Macaca_fascicularis
ENSPCIG00000006156	UPF1	100	97.699	ENSMMUG00000023286	UPF1	100	97.699	Macaca_mulatta
ENSPCIG00000006156	UPF1	100	97.699	ENSMNEG00000000046	UPF1	100	97.699	Macaca_nemestrina
ENSPCIG00000006156	UPF1	93	98.002	ENSMLEG00000028404	UPF1	99	98.002	Mandrillus_leucophaeus
ENSPCIG00000006156	UPF1	100	91.971	ENSMAMG00000006231	-	100	92.417	Mastacembelus_armatus
ENSPCIG00000006156	UPF1	100	90.317	ENSMAMG00000006229	upf1	100	91.285	Mastacembelus_armatus
ENSPCIG00000006156	UPF1	100	92.500	ENSMZEG00005016386	-	100	92.411	Maylandia_zebra
ENSPCIG00000006156	UPF1	100	90.325	ENSMZEG00005003489	upf1	100	91.512	Maylandia_zebra
ENSPCIG00000006156	UPF1	93	98.194	ENSMGAG00000004745	UPF1	100	98.194	Meleagris_gallopavo
ENSPCIG00000006156	UPF1	96	95.037	ENSMAUG00000011398	Upf1	98	95.037	Mesocricetus_auratus
ENSPCIG00000006156	UPF1	100	98.391	ENSMICG00000001659	UPF1	100	98.391	Microcebus_murinus
ENSPCIG00000006156	UPF1	100	96.811	ENSMOCG00000005699	Upf1	100	96.811	Microtus_ochrogaster
ENSPCIG00000006156	UPF1	93	92.632	ENSMMOG00000007537	-	99	92.727	Mola_mola
ENSPCIG00000006156	UPF1	100	91.055	ENSMMOG00000007881	upf1	100	91.421	Mola_mola
ENSPCIG00000006156	UPF1	100	98.411	ENSMODG00000003689	UPF1	100	98.411	Monodelphis_domestica
ENSPCIG00000006156	UPF1	100	91.370	ENSMALG00000018100	-	100	91.370	Monopterus_albus
ENSPCIG00000006156	UPF1	100	91.413	ENSMALG00000000144	upf1	100	91.682	Monopterus_albus
ENSPCIG00000006156	UPF1	100	97.853	MGP_CAROLIEiJ_G0031142	Upf1	100	97.853	Mus_caroli
ENSPCIG00000006156	UPF1	100	97.853	ENSMUSG00000058301	Upf1	100	97.853	Mus_musculus
ENSPCIG00000006156	UPF1	100	97.853	MGP_PahariEiJ_G0021607	Upf1	100	97.853	Mus_pahari
ENSPCIG00000006156	UPF1	100	97.853	MGP_SPRETEiJ_G0032260	Upf1	100	97.853	Mus_spretus
ENSPCIG00000006156	UPF1	100	98.749	ENSMPUG00000015516	UPF1	100	98.749	Mustela_putorius_furo
ENSPCIG00000006156	UPF1	99	98.296	ENSMLUG00000012122	UPF1	99	98.296	Myotis_lucifugus
ENSPCIG00000006156	UPF1	100	96.988	ENSNGAG00000024107	Upf1	100	96.988	Nannospalax_galili
ENSPCIG00000006156	UPF1	100	90.072	ENSNBRG00000000670	upf1	100	90.027	Neolamprologus_brichardi
ENSPCIG00000006156	UPF1	100	89.147	ENSNBRG00000022069	-	100	93.780	Neolamprologus_brichardi
ENSPCIG00000006156	UPF1	93	92.198	ENSNLEG00000006062	UPF1	99	92.198	Nomascus_leucogenys
ENSPCIG00000006156	UPF1	83	95.882	ENSMEUG00000014146	-	83	95.882	Notamacropus_eugenii
ENSPCIG00000006156	UPF1	93	91.154	ENSOPRG00000014018	UPF1	99	91.154	Ochotona_princeps
ENSPCIG00000006156	UPF1	100	96.103	ENSODEG00000012426	UPF1	100	96.103	Octodon_degus
ENSPCIG00000006156	UPF1	100	90.589	ENSONIG00000010452	upf1	100	91.777	Oreochromis_niloticus
ENSPCIG00000006156	UPF1	100	92.589	ENSONIG00000012729	-	100	92.500	Oreochromis_niloticus
ENSPCIG00000006156	UPF1	100	96.905	ENSOANG00000004568	UPF1	100	96.905	Ornithorhynchus_anatinus
ENSPCIG00000006156	UPF1	100	92.589	ENSORLG00000008453	upf1	100	92.589	Oryzias_latipes
ENSPCIG00000006156	UPF1	100	92.507	ENSORLG00020014758	upf1	100	92.507	Oryzias_latipes_hni
ENSPCIG00000006156	UPF1	100	92.507	ENSORLG00015010165	upf1	100	92.507	Oryzias_latipes_hsok
ENSPCIG00000006156	UPF1	100	92.679	ENSOMEG00000003665	upf1	100	92.589	Oryzias_melastigma
ENSPCIG00000006156	UPF1	100	98.749	ENSOGAG00000012866	UPF1	100	98.749	Otolemur_garnettii
ENSPCIG00000006156	UPF1	96	95.856	ENSOARG00000010739	UPF1	100	95.856	Ovis_aries
ENSPCIG00000006156	UPF1	95	97.012	ENSPPAG00000043884	UPF1	97	97.012	Pan_paniscus
ENSPCIG00000006156	UPF1	100	97.699	ENSPPRG00000023470	UPF1	100	97.699	Panthera_pardus
ENSPCIG00000006156	UPF1	93	96.929	ENSPTIG00000010159	UPF1	99	96.929	Panthera_tigris_altaica
ENSPCIG00000006156	UPF1	100	97.699	ENSPTRG00000010721	UPF1	100	97.699	Pan_troglodytes
ENSPCIG00000006156	UPF1	100	97.699	ENSPANG00000008847	UPF1	100	97.699	Papio_anubis
ENSPCIG00000006156	UPF1	91	94.922	ENSPKIG00000006069	upf1	97	94.824	Paramormyrops_kingsleyae
ENSPCIG00000006156	UPF1	68	98.693	ENSPSIG00000009491	UPF1	100	98.693	Pelodiscus_sinensis
ENSPCIG00000006156	UPF1	100	89.581	ENSPMGG00000017327	upf1	100	89.600	Periophthalmus_magnuspinnatus
ENSPCIG00000006156	UPF1	100	96.988	ENSPEMG00000001085	Upf1	100	96.988	Peromyscus_maniculatus_bairdii
ENSPCIG00000006156	UPF1	100	87.134	ENSPMAG00000001206	upf1	100	86.868	Petromyzon_marinus
ENSPCIG00000006156	UPF1	100	89.814	ENSPLAG00000018155	-	100	89.725	Poecilia_latipinna
ENSPCIG00000006156	UPF1	100	92.583	ENSPLAG00000016232	-	100	92.493	Poecilia_latipinna
ENSPCIG00000006156	UPF1	100	92.500	ENSPMEG00000016319	-	100	92.411	Poecilia_mexicana
ENSPCIG00000006156	UPF1	100	90.366	ENSPMEG00000011443	-	100	90.277	Poecilia_mexicana
ENSPCIG00000006156	UPF1	100	92.404	ENSPREG00000011247	-	100	92.315	Poecilia_reticulata
ENSPCIG00000006156	UPF1	100	90.168	ENSPREG00000009940	upf1	100	90.168	Poecilia_reticulata
ENSPCIG00000006156	UPF1	100	92.743	ENSPPYG00000009752	UPF1	100	92.743	Pongo_abelii
ENSPCIG00000006156	UPF1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSPCIG00000006156	UPF1	100	97.522	ENSPCOG00000023813	UPF1	100	97.522	Propithecus_coquereli
ENSPCIG00000006156	UPF1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSPCIG00000006156	UPF1	100	92.589	ENSPNYG00000016731	-	100	92.500	Pundamilia_nyererei
ENSPCIG00000006156	UPF1	100	90.325	ENSPNYG00000003694	upf1	100	91.512	Pundamilia_nyererei
ENSPCIG00000006156	UPF1	100	93.399	ENSPNAG00000025614	upf1	100	93.845	Pygocentrus_nattereri
ENSPCIG00000006156	UPF1	100	97.853	ENSRNOG00000020134	Upf1	100	97.853	Rattus_norvegicus
ENSPCIG00000006156	UPF1	95	94.678	ENSRBIG00000013894	UPF1	98	98.905	Rhinopithecus_bieti
ENSPCIG00000006156	UPF1	95	97.012	ENSRROG00000040935	UPF1	98	98.905	Rhinopithecus_roxellana
ENSPCIG00000006156	UPF1	71	57.822	YMR080C	NAM7	82	57.822	Saccharomyces_cerevisiae
ENSPCIG00000006156	UPF1	93	98.000	ENSSBOG00000023632	UPF1	96	98.000	Saimiri_boliviensis_boliviensis
ENSPCIG00000006156	UPF1	93	98.670	ENSSHAG00000010499	UPF1	100	98.670	Sarcophilus_harrisii
ENSPCIG00000006156	UPF1	100	95.357	ENSSFOG00015021095	upf1	99	97.507	Scleropages_formosus
ENSPCIG00000006156	UPF1	100	92.596	ENSSMAG00000021018	-	100	92.596	Scophthalmus_maximus
ENSPCIG00000006156	UPF1	100	89.506	ENSSMAG00000005055	upf1	100	90.396	Scophthalmus_maximus
ENSPCIG00000006156	UPF1	100	92.953	ENSSDUG00000009629	-	100	92.953	Seriola_dumerili
ENSPCIG00000006156	UPF1	100	90.581	ENSSDUG00000013320	upf1	100	91.549	Seriola_dumerili
ENSPCIG00000006156	UPF1	100	91.385	ENSSLDG00000020868	upf1	100	91.844	Seriola_lalandi_dorsalis
ENSPCIG00000006156	UPF1	100	92.953	ENSSLDG00000006878	-	100	92.953	Seriola_lalandi_dorsalis
ENSPCIG00000006156	UPF1	100	97.943	ENSSPUG00000010538	UPF1	100	97.943	Sphenodon_punctatus
ENSPCIG00000006156	UPF1	100	89.812	ENSSPAG00000000003	upf1	100	89.750	Stegastes_partitus
ENSPCIG00000006156	UPF1	100	92.761	ENSSPAG00000011521	-	100	92.672	Stegastes_partitus
ENSPCIG00000006156	UPF1	100	98.479	ENSSSCG00000039301	UPF1	100	98.479	Sus_scrofa
ENSPCIG00000006156	UPF1	83	90.223	ENSTGUG00000001057	UPF1	100	95.575	Taeniopygia_guttata
ENSPCIG00000006156	UPF1	100	91.055	ENSTRUG00000000150	upf1	100	91.055	Takifugu_rubripes
ENSPCIG00000006156	UPF1	100	91.689	ENSTRUG00000005131	-	100	91.689	Takifugu_rubripes
ENSPCIG00000006156	UPF1	100	94.365	ENSTTRG00000011544	UPF1	100	94.186	Tursiops_truncatus
ENSPCIG00000006156	UPF1	100	98.660	ENSUAMG00000007093	UPF1	100	98.660	Ursus_americanus
ENSPCIG00000006156	UPF1	96	97.378	ENSUMAG00000006652	UPF1	99	99.274	Ursus_maritimus
ENSPCIG00000006156	UPF1	100	98.749	ENSVVUG00000007797	UPF1	100	98.749	Vulpes_vulpes
ENSPCIG00000006156	UPF1	100	82.819	ENSXETG00000013602	upf1	100	82.379	Xenopus_tropicalis
ENSPCIG00000006156	UPF1	92	94.859	ENSXCOG00000005764	-	100	94.859	Xiphophorus_couchianus
ENSPCIG00000006156	UPF1	97	90.111	ENSXCOG00000015275	-	96	90.111	Xiphophorus_couchianus
ENSPCIG00000006156	UPF1	100	90.349	ENSXMAG00000001703	-	100	90.259	Xiphophorus_maculatus
ENSPCIG00000006156	UPF1	100	92.321	ENSXMAG00000002540	-	100	92.232	Xiphophorus_maculatus