EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPCIG00000008880 (Gene tree)
Gene ID: 110207583
Gene Symbol: LSM1
Alias: -
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Phascolarctos_cinereus
Status: putative
Strand: Plus strand
Length: 15761 bases
Position: chrFUWB01000067.1:296764-312524
Accession: 110207583
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCIP00000010978	LSM	PF01423.22	2.3e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCIT00000013720	LSM1-201	1076	-	ENSPCIP00000010978	133 (aa)	XP_020840920	UPI000A2810ED

Gene Model

Click here to download ENSPCIG00000008880's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCIG00000008880's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPCIG00000008880	LSM1	65	34.091	ENSPCIG00000021467	LSM8	93	34.091

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCIG00000008880	LSM1	100	96.241	ENSG00000175324	LSM1	100	96.241	Homo_sapiens
ENSPCIG00000008880	LSM1	100	84.962	ENSAPOG00000010833	lsm1	100	84.962	Acanthochromis_polyacanthus
ENSPCIG00000008880	LSM1	100	96.241	ENSAMEG00000011141	LSM1	100	96.241	Ailuropoda_melanoleuca
ENSPCIG00000008880	LSM1	58	93.506	ENSACIG00000019593	lsm1	64	93.506	Amphilophus_citrinellus
ENSPCIG00000008880	LSM1	100	84.962	ENSAOCG00000017096	lsm1	100	84.962	Amphiprion_ocellaris
ENSPCIG00000008880	LSM1	100	84.962	ENSAOCG00000017997	-	100	84.962	Amphiprion_ocellaris
ENSPCIG00000008880	LSM1	100	84.962	ENSAPEG00000011669	lsm1	100	84.962	Amphiprion_percula
ENSPCIG00000008880	LSM1	100	83.459	ENSATEG00000022266	lsm1	100	83.459	Anabas_testudineus
ENSPCIG00000008880	LSM1	100	96.241	ENSANAG00000027785	LSM1	100	96.241	Aotus_nancymaae
ENSPCIG00000008880	LSM1	100	83.459	ENSACLG00000011400	lsm1	100	83.459	Astatotilapia_calliptera
ENSPCIG00000008880	LSM1	100	86.466	ENSAMXG00000005441	lsm1	100	86.466	Astyanax_mexicanus
ENSPCIG00000008880	LSM1	100	95.489	ENSBTAG00000001612	LSM1	100	95.489	Bos_taurus
ENSPCIG00000008880	LSM1	87	51.695	WBGene00003076	lsm-1	90	51.695	Caenorhabditis_elegans
ENSPCIG00000008880	LSM1	100	95.489	ENSCJAG00000048015	LSM1	100	95.489	Callithrix_jacchus
ENSPCIG00000008880	LSM1	100	96.241	ENSCAFG00000006113	LSM1	100	96.241	Canis_familiaris
ENSPCIG00000008880	LSM1	100	96.241	ENSCAFG00020001822	LSM1	100	96.241	Canis_lupus_dingo
ENSPCIG00000008880	LSM1	100	96.241	ENSCHIG00000013194	LSM1	100	96.241	Capra_hircus
ENSPCIG00000008880	LSM1	100	96.241	ENSTSYG00000010394	LSM1	100	96.241	Carlito_syrichta
ENSPCIG00000008880	LSM1	100	96.241	ENSCPOG00000032671	LSM1	100	96.241	Cavia_porcellus
ENSPCIG00000008880	LSM1	100	96.241	ENSCCAG00000037171	LSM1	100	96.241	Cebus_capucinus
ENSPCIG00000008880	LSM1	100	96.241	ENSCATG00000020377	LSM1	100	96.241	Cercocebus_atys
ENSPCIG00000008880	LSM1	100	94.737	ENSCLAG00000001137	LSM1	100	94.737	Chinchilla_lanigera
ENSPCIG00000008880	LSM1	100	96.241	ENSCSAG00000015485	LSM1	100	96.241	Chlorocebus_sabaeus
ENSPCIG00000008880	LSM1	100	96.992	ENSCHOG00000006030	LSM1	100	96.992	Choloepus_hoffmanni
ENSPCIG00000008880	LSM1	95	89.764	ENSCPBG00000006569	LSM1	86	89.764	Chrysemys_picta_bellii
ENSPCIG00000008880	LSM1	99	70.455	ENSCING00000013536	-	99	70.455	Ciona_intestinalis
ENSPCIG00000008880	LSM1	100	96.241	ENSCANG00000019173	LSM1	100	96.241	Colobus_angolensis_palliatus
ENSPCIG00000008880	LSM1	80	80.180	ENSCGRG00001002259	-	97	80.180	Cricetulus_griseus_chok1gshd
ENSPCIG00000008880	LSM1	100	95.489	ENSCGRG00001024560	-	100	95.489	Cricetulus_griseus_chok1gshd
ENSPCIG00000008880	LSM1	80	80.180	ENSCGRG00000013603	-	97	80.180	Cricetulus_griseus_crigri
ENSPCIG00000008880	LSM1	100	95.489	ENSCGRG00000006554	-	100	95.489	Cricetulus_griseus_crigri
ENSPCIG00000008880	LSM1	100	83.459	ENSCSEG00000008319	lsm1	92	83.459	Cynoglossus_semilaevis
ENSPCIG00000008880	LSM1	100	84.211	ENSCSEG00000010570	lsm1	92	84.211	Cynoglossus_semilaevis
ENSPCIG00000008880	LSM1	100	82.707	ENSCVAG00000003871	lsm1	100	82.707	Cyprinodon_variegatus
ENSPCIG00000008880	LSM1	100	85.714	ENSDARG00000043177	lsm1	100	85.714	Danio_rerio
ENSPCIG00000008880	LSM1	100	95.489	ENSDNOG00000032911	-	100	95.489	Dasypus_novemcinctus
ENSPCIG00000008880	LSM1	100	90.226	ENSDNOG00000030989	-	100	90.226	Dasypus_novemcinctus
ENSPCIG00000008880	LSM1	89	77.311	ENSDNOG00000046620	-	100	77.311	Dasypus_novemcinctus
ENSPCIG00000008880	LSM1	100	96.241	ENSDNOG00000046387	-	100	96.241	Dasypus_novemcinctus
ENSPCIG00000008880	LSM1	100	96.241	ENSDORG00000028172	Lsm1	100	96.241	Dipodomys_ordii
ENSPCIG00000008880	LSM1	93	66.935	FBgn0261067	LSm1	91	66.935	Drosophila_melanogaster
ENSPCIG00000008880	LSM1	100	95.489	ENSEASG00005016677	LSM1	100	95.489	Equus_asinus_asinus
ENSPCIG00000008880	LSM1	100	95.489	ENSECAG00000010461	LSM1	100	95.489	Equus_caballus
ENSPCIG00000008880	LSM1	72	83.333	ENSEEUG00000015181	LSM1	97	83.333	Erinaceus_europaeus
ENSPCIG00000008880	LSM1	100	83.459	ENSELUG00000023374	lsm1	100	83.459	Esox_lucius
ENSPCIG00000008880	LSM1	100	84.211	ENSELUG00000002322	lsm1	100	84.211	Esox_lucius
ENSPCIG00000008880	LSM1	100	96.241	ENSFCAG00000039335	LSM1	100	96.241	Felis_catus
ENSPCIG00000008880	LSM1	89	95.763	ENSFALG00000006723	LSM1	100	95.763	Ficedula_albicollis
ENSPCIG00000008880	LSM1	100	96.241	ENSFDAG00000007658	LSM1	100	96.241	Fukomys_damarensis
ENSPCIG00000008880	LSM1	100	82.707	ENSFHEG00000009556	lsm1	100	82.707	Fundulus_heteroclitus
ENSPCIG00000008880	LSM1	100	81.203	ENSGMOG00000016651	lsm1	98	81.203	Gadus_morhua
ENSPCIG00000008880	LSM1	100	93.985	ENSGALG00000003245	LSM1	100	93.985	Gallus_gallus
ENSPCIG00000008880	LSM1	100	82.707	ENSGAFG00000011355	lsm1	100	82.707	Gambusia_affinis
ENSPCIG00000008880	LSM1	100	83.459	ENSGACG00000011763	lsm1	98	83.459	Gasterosteus_aculeatus
ENSPCIG00000008880	LSM1	100	96.241	ENSGAGG00000024065	LSM1	100	96.241	Gopherus_agassizii
ENSPCIG00000008880	LSM1	100	96.241	ENSGGOG00000022658	LSM1	100	96.241	Gorilla_gorilla
ENSPCIG00000008880	LSM1	100	83.459	ENSHBUG00000010897	lsm1	100	83.459	Haplochromis_burtoni
ENSPCIG00000008880	LSM1	100	76.692	ENSHGLG00000017574	-	100	76.692	Heterocephalus_glaber_female
ENSPCIG00000008880	LSM1	100	96.241	ENSHGLG00000005711	LSM1	100	96.241	Heterocephalus_glaber_female
ENSPCIG00000008880	LSM1	100	96.241	ENSHGLG00100017660	LSM1	100	96.241	Heterocephalus_glaber_male
ENSPCIG00000008880	LSM1	100	76.692	ENSHGLG00100012152	-	100	76.692	Heterocephalus_glaber_male
ENSPCIG00000008880	LSM1	100	83.459	ENSHCOG00000017233	lsm1	100	83.459	Hippocampus_comes
ENSPCIG00000008880	LSM1	100	85.714	ENSIPUG00000002312	LSM1	100	85.714	Ictalurus_punctatus
ENSPCIG00000008880	LSM1	58	98.701	ENSSTOG00000026870	LSM1	94	98.701	Ictidomys_tridecemlineatus
ENSPCIG00000008880	LSM1	100	94.737	ENSJJAG00000014605	-	100	94.737	Jaculus_jaculus
ENSPCIG00000008880	LSM1	100	83.459	ENSKMAG00000003016	lsm1	100	83.459	Kryptolebias_marmoratus
ENSPCIG00000008880	LSM1	100	83.459	ENSLBEG00000022352	lsm1	100	83.459	Labrus_bergylta
ENSPCIG00000008880	LSM1	89	89.831	ENSLACG00000010947	LSM1	98	89.831	Latimeria_chalumnae
ENSPCIG00000008880	LSM1	100	92.481	ENSLOCG00000015149	lsm1	100	92.481	Lepisosteus_oculatus
ENSPCIG00000008880	LSM1	100	96.241	ENSLAFG00000003534	LSM1	100	96.241	Loxodonta_africana
ENSPCIG00000008880	LSM1	100	96.241	ENSMFAG00000032661	LSM1	100	96.241	Macaca_fascicularis
ENSPCIG00000008880	LSM1	100	96.241	ENSMLEG00000034535	LSM1	100	96.241	Mandrillus_leucophaeus
ENSPCIG00000008880	LSM1	100	83.459	ENSMAMG00000007464	lsm1	100	83.459	Mastacembelus_armatus
ENSPCIG00000008880	LSM1	100	83.459	ENSMZEG00005010321	lsm1	100	83.459	Maylandia_zebra
ENSPCIG00000008880	LSM1	100	93.985	ENSMGAG00000002125	LSM1	100	93.985	Meleagris_gallopavo
ENSPCIG00000008880	LSM1	100	95.489	ENSMICG00000030726	LSM1	100	95.489	Microcebus_murinus
ENSPCIG00000008880	LSM1	100	95.489	ENSMOCG00000022817	Lsm1	100	95.489	Microtus_ochrogaster
ENSPCIG00000008880	LSM1	100	84.211	ENSMMOG00000015466	lsm1	100	84.211	Mola_mola
ENSPCIG00000008880	LSM1	100	98.496	ENSMODG00000010732	-	100	98.496	Monodelphis_domestica
ENSPCIG00000008880	LSM1	58	93.506	ENSMALG00000001478	lsm1	82	93.506	Monopterus_albus
ENSPCIG00000008880	LSM1	100	93.985	MGP_CAROLIEiJ_G0030930	Lsm1	100	93.985	Mus_caroli
ENSPCIG00000008880	LSM1	100	93.985	ENSMUSG00000037296	Lsm1	100	93.985	Mus_musculus
ENSPCIG00000008880	LSM1	100	93.985	MGP_PahariEiJ_G0021400	Lsm1	100	93.985	Mus_pahari
ENSPCIG00000008880	LSM1	100	93.985	MGP_SPRETEiJ_G0032049	Lsm1	100	93.985	Mus_spretus
ENSPCIG00000008880	LSM1	100	96.992	ENSMPUG00000009883	LSM1	100	96.992	Mustela_putorius_furo
ENSPCIG00000008880	LSM1	100	95.489	ENSMLUG00000003734	LSM1	100	95.489	Myotis_lucifugus
ENSPCIG00000008880	LSM1	100	95.489	ENSNGAG00000003753	Lsm1	100	95.489	Nannospalax_galili
ENSPCIG00000008880	LSM1	58	93.506	ENSNBRG00000017370	lsm1	66	93.506	Neolamprologus_brichardi
ENSPCIG00000008880	LSM1	100	96.241	ENSNLEG00000029390	LSM1	100	96.241	Nomascus_leucogenys
ENSPCIG00000008880	LSM1	100	98.496	ENSMEUG00000014077	LSM1	100	98.496	Notamacropus_eugenii
ENSPCIG00000008880	LSM1	88	92.308	ENSOPRG00000000333	LSM1	100	92.308	Ochotona_princeps
ENSPCIG00000008880	LSM1	100	96.241	ENSODEG00000004834	LSM1	100	96.241	Octodon_degus
ENSPCIG00000008880	LSM1	100	83.459	ENSONIG00000010782	lsm1	100	83.459	Oreochromis_niloticus
ENSPCIG00000008880	LSM1	100	97.744	ENSOANG00000003256	LSM1	100	97.744	Ornithorhynchus_anatinus
ENSPCIG00000008880	LSM1	100	96.241	ENSOCUG00000015399	LSM1	100	96.241	Oryctolagus_cuniculus
ENSPCIG00000008880	LSM1	100	84.962	ENSORLG00000030288	lsm1	100	84.962	Oryzias_latipes
ENSPCIG00000008880	LSM1	100	84.962	ENSORLG00020003941	lsm1	100	84.962	Oryzias_latipes_hni
ENSPCIG00000008880	LSM1	100	83.459	ENSORLG00020006213	-	86	83.459	Oryzias_latipes_hni
ENSPCIG00000008880	LSM1	100	84.962	ENSORLG00015018350	lsm1	100	84.962	Oryzias_latipes_hsok
ENSPCIG00000008880	LSM1	100	84.962	ENSOMEG00000012454	lsm1	100	84.962	Oryzias_melastigma
ENSPCIG00000008880	LSM1	100	96.241	ENSOGAG00000015161	LSM1	100	96.241	Otolemur_garnettii
ENSPCIG00000008880	LSM1	100	96.241	ENSOARG00000001317	LSM1	100	96.241	Ovis_aries
ENSPCIG00000008880	LSM1	100	96.241	ENSPPAG00000032279	LSM1	100	96.241	Pan_paniscus
ENSPCIG00000008880	LSM1	100	96.241	ENSPPRG00000014172	-	100	96.241	Panthera_pardus
ENSPCIG00000008880	LSM1	100	96.241	ENSPTIG00000010289	LSM1	100	96.241	Panthera_tigris_altaica
ENSPCIG00000008880	LSM1	100	96.241	ENSPTRG00000020169	LSM1	100	96.241	Pan_troglodytes
ENSPCIG00000008880	LSM1	100	96.241	ENSPANG00000008814	LSM1	100	96.241	Papio_anubis
ENSPCIG00000008880	LSM1	100	83.459	ENSPKIG00000019409	LSM1	99	83.459	Paramormyrops_kingsleyae
ENSPCIG00000008880	LSM1	100	90.226	ENSPKIG00000001839	lsm1	100	90.226	Paramormyrops_kingsleyae
ENSPCIG00000008880	LSM1	98	90.000	ENSPSIG00000012563	LSM1	99	90.000	Pelodiscus_sinensis
ENSPCIG00000008880	LSM1	58	93.506	ENSPMGG00000022999	lsm1	73	93.506	Periophthalmus_magnuspinnatus
ENSPCIG00000008880	LSM1	85	79.646	ENSPMAG00000002671	lsm1	100	79.646	Petromyzon_marinus
ENSPCIG00000008880	LSM1	100	82.707	ENSPFOG00000016029	lsm1	100	82.707	Poecilia_formosa
ENSPCIG00000008880	LSM1	100	82.707	ENSPLAG00000007879	lsm1	100	82.707	Poecilia_latipinna
ENSPCIG00000008880	LSM1	100	82.707	ENSPMEG00000023550	lsm1	100	82.707	Poecilia_mexicana
ENSPCIG00000008880	LSM1	100	82.707	ENSPREG00000009574	lsm1	100	82.707	Poecilia_reticulata
ENSPCIG00000008880	LSM1	100	96.241	ENSPPYG00000018521	LSM1	100	96.241	Pongo_abelii
ENSPCIG00000008880	LSM1	100	96.241	ENSPCOG00000020901	-	100	96.241	Propithecus_coquereli
ENSPCIG00000008880	LSM1	100	96.241	ENSPVAG00000006016	LSM1	100	96.241	Pteropus_vampyrus
ENSPCIG00000008880	LSM1	100	83.459	ENSPNYG00000018067	lsm1	100	83.459	Pundamilia_nyererei
ENSPCIG00000008880	LSM1	100	85.714	ENSPNAG00000013707	lsm1	100	85.714	Pygocentrus_nattereri
ENSPCIG00000008880	LSM1	100	93.985	ENSRNOG00000015375	Lsm1	100	93.985	Rattus_norvegicus
ENSPCIG00000008880	LSM1	100	96.241	ENSRBIG00000027449	LSM1	100	96.241	Rhinopithecus_bieti
ENSPCIG00000008880	LSM1	100	96.241	ENSRROG00000036074	LSM1	100	96.241	Rhinopithecus_roxellana
ENSPCIG00000008880	LSM1	83	45.299	YJL124C	LSM1	67	45.299	Saccharomyces_cerevisiae
ENSPCIG00000008880	LSM1	100	98.496	ENSSHAG00000017260	LSM1	100	98.496	Sarcophilus_harrisii
ENSPCIG00000008880	LSM1	100	90.977	ENSSFOG00015019528	lsm1	100	90.977	Scleropages_formosus
ENSPCIG00000008880	LSM1	100	83.459	ENSSMAG00000004930	lsm1	100	83.459	Scophthalmus_maximus
ENSPCIG00000008880	LSM1	100	84.962	ENSSDUG00000021823	lsm1	100	84.962	Seriola_dumerili
ENSPCIG00000008880	LSM1	100	84.962	ENSSLDG00000012154	lsm1	100	84.962	Seriola_lalandi_dorsalis
ENSPCIG00000008880	LSM1	100	96.241	ENSSPUG00000014878	LSM1	100	96.241	Sphenodon_punctatus
ENSPCIG00000008880	LSM1	100	84.211	ENSSPAG00000020548	lsm1	100	84.211	Stegastes_partitus
ENSPCIG00000008880	LSM1	100	94.737	ENSSSCG00000039058	LSM1	100	94.737	Sus_scrofa
ENSPCIG00000008880	LSM1	100	96.992	ENSTGUG00000004793	LSM1	100	96.992	Taeniopygia_guttata
ENSPCIG00000008880	LSM1	100	85.714	ENSTRUG00000025239	lsm1	100	85.714	Takifugu_rubripes
ENSPCIG00000008880	LSM1	100	86.466	ENSTNIG00000004055	lsm1	100	86.466	Tetraodon_nigroviridis
ENSPCIG00000008880	LSM1	88	94.017	ENSTBEG00000015884	LSM1	100	94.017	Tupaia_belangeri
ENSPCIG00000008880	LSM1	100	96.241	ENSTTRG00000004482	LSM1	100	96.241	Tursiops_truncatus
ENSPCIG00000008880	LSM1	100	96.241	ENSUAMG00000004103	LSM1	100	96.241	Ursus_americanus
ENSPCIG00000008880	LSM1	100	96.241	ENSUMAG00000009132	LSM1	100	96.241	Ursus_maritimus
ENSPCIG00000008880	LSM1	58	97.403	ENSVPAG00000011593	LSM1	100	97.403	Vicugna_pacos
ENSPCIG00000008880	LSM1	65	68.605	ENSVVUG00000014880	-	91	68.605	Vulpes_vulpes
ENSPCIG00000008880	LSM1	100	96.241	ENSVVUG00000020191	LSM1	100	96.241	Vulpes_vulpes
ENSPCIG00000008880	LSM1	100	92.701	ENSXETG00000009004	lsm1	100	92.701	Xenopus_tropicalis
ENSPCIG00000008880	LSM1	100	83.459	ENSXCOG00000015631	lsm1	100	83.459	Xiphophorus_couchianus
ENSPCIG00000008880	LSM1	100	83.459	ENSXMAG00000026637	lsm1	100	83.459	Xiphophorus_maculatus