EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPCIG00000009035 (Gene tree)
Gene ID: 110214348
Gene Symbol: CPSF1
Alias: -
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Phascolarctos_cinereus
Status: putative
Strand: Plus strand
Length: 17334 bases
Position: chrFUWB01000012.1:2278564-2295897
Accession: 110214348
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCIP00000011239	CPSF_A	PF03178.15	8.5e-93	1	1
ENSPCIP00000011234	CPSF_A	PF03178.15	9.5e-93	1	1
ENSPCIP00000011231	CPSF_A	PF03178.15	9.7e-93	1	1
ENSPCIP00000011246	CPSF_A	PF03178.15	9.8e-93	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCIT00000014003	CPSF1-202	4423	XM_020995214	ENSPCIP00000011234	1449 (aa)	XP_020850873	UPI000A289E0A
ENSPCIT00000014015	CPSF1-204	4443	-	ENSPCIP00000011246	1470 (aa)	-	-
ENSPCIT00000014000	CPSF1-201	4416	-	ENSPCIP00000011231	1461 (aa)	-	-
ENSPCIT00000014008	CPSF1-203	4270	-	ENSPCIP00000011239	1398 (aa)	-	-

Gene Model

Click here to download ENSPCIG00000009035's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCIG00000009035's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCIG00000009035	CPSF1	100	92.833	ENSG00000071894	CPSF1	100	92.833	Homo_sapiens
ENSPCIG00000009035	CPSF1	100	78.475	ENSAPOG00000019621	cpsf1	100	78.340	Acanthochromis_polyacanthus
ENSPCIG00000009035	CPSF1	97	91.880	ENSAMEG00000005557	CPSF1	100	91.880	Ailuropoda_melanoleuca
ENSPCIG00000009035	CPSF1	100	78.926	ENSACIG00000006112	cpsf1	100	78.788	Amphilophus_citrinellus
ENSPCIG00000009035	CPSF1	100	79.739	ENSAOCG00000007120	cpsf1	100	79.602	Amphiprion_ocellaris
ENSPCIG00000009035	CPSF1	100	79.890	ENSAPEG00000005755	cpsf1	100	79.822	Amphiprion_percula
ENSPCIG00000009035	CPSF1	100	78.668	ENSATEG00000011097	cpsf1	100	78.937	Anabas_testudineus
ENSPCIG00000009035	CPSF1	93	83.704	ENSACAG00000009655	CPSF1	100	83.704	Anolis_carolinensis
ENSPCIG00000009035	CPSF1	100	93.103	ENSANAG00000036514	CPSF1	100	93.103	Aotus_nancymaae
ENSPCIG00000009035	CPSF1	100	77.893	ENSACLG00000012231	cpsf1	99	79.704	Astatotilapia_calliptera
ENSPCIG00000009035	CPSF1	100	73.865	ENSAMXG00000008485	cpsf1	100	73.934	Astyanax_mexicanus
ENSPCIG00000009035	CPSF1	100	91.859	ENSBTAG00000008355	CPSF1	100	92.319	Bos_taurus
ENSPCIG00000009035	CPSF1	93	34.379	WBGene00022301	cpsf-1	100	40.282	Caenorhabditis_elegans
ENSPCIG00000009035	CPSF1	100	92.966	ENSCJAG00000021421	CPSF1	100	92.966	Callithrix_jacchus
ENSPCIG00000009035	CPSF1	97	93.514	ENSCAFG00000001600	CPSF1	100	94.155	Canis_familiaris
ENSPCIG00000009035	CPSF1	100	93.651	ENSCAFG00020020821	CPSF1	100	93.651	Canis_lupus_dingo
ENSPCIG00000009035	CPSF1	100	88.454	ENSCHIG00000015833	CPSF1	100	88.454	Capra_hircus
ENSPCIG00000009035	CPSF1	100	93.655	ENSTSYG00000028560	CPSF1	100	93.655	Carlito_syrichta
ENSPCIG00000009035	CPSF1	97	92.209	ENSCAPG00000014921	CPSF1	99	92.209	Cavia_aperea
ENSPCIG00000009035	CPSF1	100	91.517	ENSCPOG00000011448	CPSF1	100	91.517	Cavia_porcellus
ENSPCIG00000009035	CPSF1	100	93.034	ENSCCAG00000037658	CPSF1	100	93.034	Cebus_capucinus
ENSPCIG00000009035	CPSF1	100	92.828	ENSCATG00000037234	CPSF1	100	92.828	Cercocebus_atys
ENSPCIG00000009035	CPSF1	100	93.168	ENSCLAG00000012166	CPSF1	100	93.168	Chinchilla_lanigera
ENSPCIG00000009035	CPSF1	100	92.828	ENSCSAG00000008502	CPSF1	100	92.828	Chlorocebus_sabaeus
ENSPCIG00000009035	CPSF1	99	89.826	ENSCPBG00000018910	CPSF1	97	89.528	Chrysemys_picta_bellii
ENSPCIG00000009035	CPSF1	96	47.966	ENSCING00000000514	-	100	47.894	Ciona_intestinalis
ENSPCIG00000009035	CPSF1	99	48.128	ENSCSAVG00000002293	-	98	50.235	Ciona_savignyi
ENSPCIG00000009035	CPSF1	99	88.379	ENSCANG00000032760	CPSF1	100	87.963	Colobus_angolensis_palliatus
ENSPCIG00000009035	CPSF1	100	92.616	ENSCGRG00001016344	Cpsf1	100	92.616	Cricetulus_griseus_chok1gshd
ENSPCIG00000009035	CPSF1	100	90.269	ENSCGRG00000003118	Cpsf1	100	90.269	Cricetulus_griseus_crigri
ENSPCIG00000009035	CPSF1	100	78.030	ENSCSEG00000013464	cpsf1	100	78.030	Cynoglossus_semilaevis
ENSPCIG00000009035	CPSF1	85	77.768	ENSCVAG00000014059	cpsf1	100	75.463	Cyprinodon_variegatus
ENSPCIG00000009035	CPSF1	100	80.233	ENSDARG00000034178	cpsf1	100	80.151	Danio_rerio
ENSPCIG00000009035	CPSF1	57	94.783	ENSDNOG00000043654	CPSF1	94	94.783	Dasypus_novemcinctus
ENSPCIG00000009035	CPSF1	97	92.924	ENSDORG00000006278	Cpsf1	99	92.924	Dipodomys_ordii
ENSPCIG00000009035	CPSF1	100	45.332	FBgn0024698	Cpsf160	100	45.296	Drosophila_melanogaster
ENSPCIG00000009035	CPSF1	80	97.315	ENSETEG00000006022	CPSF1	83	97.315	Echinops_telfairi
ENSPCIG00000009035	CPSF1	100	93.996	ENSEASG00005010774	CPSF1	100	93.996	Equus_asinus_asinus
ENSPCIG00000009035	CPSF1	100	94.134	ENSECAG00000022209	CPSF1	100	94.134	Equus_caballus
ENSPCIG00000009035	CPSF1	100	91.931	ENSEEUG00000000471	CPSF1	100	91.931	Erinaceus_europaeus
ENSPCIG00000009035	CPSF1	100	78.800	ENSELUG00000012271	cpsf1	100	78.872	Esox_lucius
ENSPCIG00000009035	CPSF1	100	93.168	ENSFDAG00000016060	CPSF1	100	93.168	Fukomys_damarensis
ENSPCIG00000009035	CPSF1	100	77.656	ENSFHEG00000016801	cpsf1	100	77.519	Fundulus_heteroclitus
ENSPCIG00000009035	CPSF1	100	78.454	ENSGMOG00000000796	cpsf1	100	78.478	Gadus_morhua
ENSPCIG00000009035	CPSF1	96	85.714	ENSGAFG00000018890	cpsf1	100	85.714	Gambusia_affinis
ENSPCIG00000009035	CPSF1	100	79.110	ENSGACG00000008703	cpsf1	100	78.973	Gasterosteus_aculeatus
ENSPCIG00000009035	CPSF1	100	86.382	ENSGAGG00000004276	CPSF1	98	90.042	Gopherus_agassizii
ENSPCIG00000009035	CPSF1	100	92.892	ENSGGOG00000016185	CPSF1	100	92.892	Gorilla_gorilla
ENSPCIG00000009035	CPSF1	100	80.028	ENSHBUG00000018900	cpsf1	100	79.959	Haplochromis_burtoni
ENSPCIG00000009035	CPSF1	100	93.099	ENSHGLG00000016139	CPSF1	100	93.099	Heterocephalus_glaber_female
ENSPCIG00000009035	CPSF1	100	93.030	ENSHGLG00100009750	CPSF1	100	93.030	Heterocephalus_glaber_male
ENSPCIG00000009035	CPSF1	100	77.673	ENSHCOG00000018509	cpsf1	100	77.778	Hippocampus_comes
ENSPCIG00000009035	CPSF1	100	77.092	ENSIPUG00000011259	cpsf1	100	77.092	Ictalurus_punctatus
ENSPCIG00000009035	CPSF1	97	92.877	ENSSTOG00000009957	CPSF1	99	92.877	Ictidomys_tridecemlineatus
ENSPCIG00000009035	CPSF1	100	92.754	ENSJJAG00000023002	Cpsf1	100	92.754	Jaculus_jaculus
ENSPCIG00000009035	CPSF1	91	85.580	ENSKMAG00000001940	cpsf1	99	85.580	Kryptolebias_marmoratus
ENSPCIG00000009035	CPSF1	100	78.093	ENSLBEG00000003601	cpsf1	100	78.446	Labrus_bergylta
ENSPCIG00000009035	CPSF1	88	82.332	ENSLACG00000000233	CPSF1	92	82.332	Latimeria_chalumnae
ENSPCIG00000009035	CPSF1	100	79.190	ENSLOCG00000008484	cpsf1	100	79.533	Lepisosteus_oculatus
ENSPCIG00000009035	CPSF1	97	93.710	ENSLAFG00000022601	CPSF1	99	93.714	Loxodonta_africana
ENSPCIG00000009035	CPSF1	100	92.828	ENSMFAG00000037013	CPSF1	99	94.063	Macaca_fascicularis
ENSPCIG00000009035	CPSF1	100	92.897	ENSMMUG00000007380	CPSF1	100	92.897	Macaca_mulatta
ENSPCIG00000009035	CPSF1	97	93.143	ENSMNEG00000043564	CPSF1	99	93.143	Macaca_nemestrina
ENSPCIG00000009035	CPSF1	100	92.966	ENSMLEG00000043010	CPSF1	100	92.966	Mandrillus_leucophaeus
ENSPCIG00000009035	CPSF1	100	79.082	ENSMAMG00000003803	cpsf1	100	79.285	Mastacembelus_armatus
ENSPCIG00000009035	CPSF1	100	77.755	ENSMZEG00005001168	cpsf1	100	77.686	Maylandia_zebra
ENSPCIG00000009035	CPSF1	100	92.754	ENSMAUG00000003601	Cpsf1	100	92.754	Mesocricetus_auratus
ENSPCIG00000009035	CPSF1	100	93.099	ENSMICG00000015767	CPSF1	100	93.099	Microcebus_murinus
ENSPCIG00000009035	CPSF1	100	92.685	ENSMOCG00000022758	Cpsf1	100	92.685	Microtus_ochrogaster
ENSPCIG00000009035	CPSF1	100	79.422	ENSMMOG00000021245	cpsf1	100	79.353	Mola_mola
ENSPCIG00000009035	CPSF1	100	99.724	ENSMODG00000010755	CPSF1	100	99.724	Monodelphis_domestica
ENSPCIG00000009035	CPSF1	100	78.041	ENSMALG00000020545	cpsf1	100	78.041	Monopterus_albus
ENSPCIG00000009035	CPSF1	100	93.099	MGP_CAROLIEiJ_G0019936	Cpsf1	100	93.099	Mus_caroli
ENSPCIG00000009035	CPSF1	100	93.030	ENSMUSG00000034022	Cpsf1	100	93.030	Mus_musculus
ENSPCIG00000009035	CPSF1	100	93.168	MGP_PahariEiJ_G0019946	Cpsf1	100	93.168	Mus_pahari
ENSPCIG00000009035	CPSF1	100	93.030	MGP_SPRETEiJ_G0020839	Cpsf1	100	93.030	Mus_spretus
ENSPCIG00000009035	CPSF1	94	92.560	ENSMPUG00000006419	CPSF1	94	93.103	Mustela_putorius_furo
ENSPCIG00000009035	CPSF1	100	92.892	ENSNGAG00000022460	Cpsf1	100	92.892	Nannospalax_galili
ENSPCIG00000009035	CPSF1	100	75.155	ENSNBRG00000000813	cpsf1	100	75.224	Neolamprologus_brichardi
ENSPCIG00000009035	CPSF1	81	96.178	ENSNLEG00000010633	-	94	96.178	Nomascus_leucogenys
ENSPCIG00000009035	CPSF1	82	100.000	ENSMEUG00000014922	CPSF1	85	100.000	Notamacropus_eugenii
ENSPCIG00000009035	CPSF1	63	96.429	ENSOPRG00000004693	-	71	96.429	Ochotona_princeps
ENSPCIG00000009035	CPSF1	100	93.306	ENSODEG00000013995	CPSF1	100	93.306	Octodon_degus
ENSPCIG00000009035	CPSF1	100	80.234	ENSONIG00000007676	cpsf1	100	80.096	Oreochromis_niloticus
ENSPCIG00000009035	CPSF1	59	92.857	ENSOANG00000010716	CPSF1	87	92.857	Ornithorhynchus_anatinus
ENSPCIG00000009035	CPSF1	100	78.441	ENSORLG00000013544	cpsf1	92	87.654	Oryzias_latipes
ENSPCIG00000009035	CPSF1	100	78.576	ENSORLG00020021693	cpsf1	92	87.654	Oryzias_latipes_hni
ENSPCIG00000009035	CPSF1	100	78.508	ENSORLG00015009979	cpsf1	100	78.576	Oryzias_latipes_hsok
ENSPCIG00000009035	CPSF1	100	78.320	ENSOMEG00000011849	cpsf1	100	78.320	Oryzias_melastigma
ENSPCIG00000009035	CPSF1	100	93.103	ENSOGAG00000000315	CPSF1	100	93.103	Otolemur_garnettii
ENSPCIG00000009035	CPSF1	100	92.966	ENSPPAG00000019280	CPSF1	100	92.966	Pan_paniscus
ENSPCIG00000009035	CPSF1	100	92.966	ENSPTRG00000049288	-	100	92.966	Pan_troglodytes
ENSPCIG00000009035	CPSF1	100	91.390	ENSPTRG00000051253	-	100	91.390	Pan_troglodytes
ENSPCIG00000009035	CPSF1	97	93.071	ENSPANG00000015005	CPSF1	99	93.071	Papio_anubis
ENSPCIG00000009035	CPSF1	99	84.130	ENSPKIG00000002582	cpsf1	100	80.650	Paramormyrops_kingsleyae
ENSPCIG00000009035	CPSF1	100	77.162	ENSPFOG00000012870	cpsf1	100	77.095	Poecilia_formosa
ENSPCIG00000009035	CPSF1	100	77.110	ENSPREG00000016307	cpsf1	100	77.043	Poecilia_reticulata
ENSPCIG00000009035	CPSF1	100	85.448	ENSPPYG00000018973	CPSF1	100	85.448	Pongo_abelii
ENSPCIG00000009035	CPSF1	91	94.602	ENSPCAG00000011541	CPSF1	94	94.602	Procavia_capensis
ENSPCIG00000009035	CPSF1	100	89.310	ENSPCOG00000020001	CPSF1	100	89.310	Propithecus_coquereli
ENSPCIG00000009035	CPSF1	93	98.857	ENSPVAG00000006761	CPSF1	91	98.857	Pteropus_vampyrus
ENSPCIG00000009035	CPSF1	100	79.203	ENSPNYG00000004906	cpsf1	100	78.933	Pundamilia_nyererei
ENSPCIG00000009035	CPSF1	100	75.618	ENSPNAG00000024395	cpsf1	100	75.618	Pygocentrus_nattereri
ENSPCIG00000009035	CPSF1	100	92.961	ENSRNOG00000030705	Cpsf1	100	92.961	Rattus_norvegicus
ENSPCIG00000009035	CPSF1	100	92.897	ENSRBIG00000044907	CPSF1	100	92.897	Rhinopithecus_bieti
ENSPCIG00000009035	CPSF1	100	92.828	ENSRROG00000044861	CPSF1	100	92.828	Rhinopithecus_roxellana
ENSPCIG00000009035	CPSF1	97	93.071	ENSSBOG00000027177	CPSF1	99	93.071	Saimiri_boliviensis_boliviensis
ENSPCIG00000009035	CPSF1	100	99.379	ENSSHAG00000006500	CPSF1	100	99.379	Sarcophilus_harrisii
ENSPCIG00000009035	CPSF1	100	78.351	ENSSFOG00015004606	cpsf1	100	81.395	Scleropages_formosus
ENSPCIG00000009035	CPSF1	100	78.581	ENSSMAG00000020547	cpsf1	100	78.784	Scophthalmus_maximus
ENSPCIG00000009035	CPSF1	100	79.642	ENSSDUG00000001100	cpsf1	100	79.711	Seriola_dumerili
ENSPCIG00000009035	CPSF1	100	79.766	ENSSLDG00000003619	cpsf1	100	79.766	Seriola_lalandi_dorsalis
ENSPCIG00000009035	CPSF1	89	91.667	ENSSARG00000003643	CPSF1	92	91.667	Sorex_araneus
ENSPCIG00000009035	CPSF1	96	89.417	ENSSPUG00000014396	CPSF1	99	89.417	Sphenodon_punctatus
ENSPCIG00000009035	CPSF1	100	78.731	ENSSPAG00000005349	cpsf1	100	78.866	Stegastes_partitus
ENSPCIG00000009035	CPSF1	100	92.754	ENSSSCG00000005906	CPSF1	100	92.754	Sus_scrofa
ENSPCIG00000009035	CPSF1	96	78.526	ENSTRUG00000013134	cpsf1	99	78.526	Takifugu_rubripes
ENSPCIG00000009035	CPSF1	100	79.084	ENSTNIG00000014027	cpsf1	100	78.947	Tetraodon_nigroviridis
ENSPCIG00000009035	CPSF1	77	84.354	ENSTBEG00000001756	CPSF1	91	84.354	Tupaia_belangeri
ENSPCIG00000009035	CPSF1	90	96.546	ENSTTRG00000001937	CPSF1	90	96.546	Tursiops_truncatus
ENSPCIG00000009035	CPSF1	97	93.870	ENSUAMG00000006476	CPSF1	98	93.870	Ursus_americanus
ENSPCIG00000009035	CPSF1	100	77.977	ENSXCOG00000003608	cpsf1	100	77.908	Xiphophorus_couchianus
ENSPCIG00000009035	CPSF1	100	77.770	ENSXMAG00000005798	cpsf1	100	77.564	Xiphophorus_maculatus