EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPCIG00000011561 (Gene tree)
Gene ID: 110219237
Gene Symbol: SND1
Alias: -
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Phascolarctos_cinereus
Status: putative
Strand: Plus strand
Length: 479716 bases
Position: chrFUWB01001956.1:782461-1262176
Accession: 110219237
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCIP00000014831	TUDOR	PF00567.24	8e-27	1	1
ENSPCIP00000014822	TUDOR	PF00567.24	8.2e-27	1	1
ENSPCIP00000014827	TUDOR	PF00567.24	8.3e-27	1	1
ENSPCIP00000014827	SNase	PF00565.17	1.5e-69	1	5
ENSPCIP00000014827	SNase	PF00565.17	1.5e-69	2	5
ENSPCIP00000014827	SNase	PF00565.17	1.5e-69	3	5
ENSPCIP00000014827	SNase	PF00565.17	1.5e-69	4	5
ENSPCIP00000014827	SNase	PF00565.17	1.5e-69	5	5
ENSPCIP00000014822	SNase	PF00565.17	1.9e-66	1	4
ENSPCIP00000014822	SNase	PF00565.17	1.9e-66	2	4
ENSPCIP00000014822	SNase	PF00565.17	1.9e-66	3	4
ENSPCIP00000014822	SNase	PF00565.17	1.9e-66	4	4
ENSPCIP00000014831	SNase	PF00565.17	1.2e-65	1	5
ENSPCIP00000014831	SNase	PF00565.17	1.2e-65	2	5
ENSPCIP00000014831	SNase	PF00565.17	1.2e-65	3	5
ENSPCIP00000014831	SNase	PF00565.17	1.2e-65	4	5
ENSPCIP00000014831	SNase	PF00565.17	1.2e-65	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCIT00000018320	SND1-203	3312	-	ENSPCIP00000014831	880 (aa)	-	-
ENSPCIT00000018310	SND1-201	3509	-	ENSPCIP00000014822	925 (aa)	-	-
ENSPCIT00000018315	SND1-202	3402	XM_021002412	ENSPCIP00000014827	910 (aa)	XP_020858071	UPI000A280DA2

Gene Model

Click here to download ENSPCIG00000011561's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCIG00000011561's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCIG00000011561	SND1	100	96.154	ENSG00000197157	SND1	100	96.154	Homo_sapiens
ENSPCIG00000011561	SND1	100	83.772	ENSAPOG00000017599	snd1	99	84.650	Acanthochromis_polyacanthus
ENSPCIG00000011561	SND1	100	96.162	ENSAMEG00000004664	SND1	94	96.162	Ailuropoda_melanoleuca
ENSPCIG00000011561	SND1	98	81.971	ENSACIG00000003551	snd1	99	81.849	Amphilophus_citrinellus
ENSPCIG00000011561	SND1	100	83.553	ENSAOCG00000014166	snd1	99	84.427	Amphiprion_ocellaris
ENSPCIG00000011561	SND1	100	83.553	ENSAPEG00000007067	snd1	99	84.427	Amphiprion_percula
ENSPCIG00000011561	SND1	98	82.793	ENSATEG00000018475	snd1	90	82.398	Anabas_testudineus
ENSPCIG00000011561	SND1	100	96.374	ENSANAG00000034463	SND1	100	96.374	Aotus_nancymaae
ENSPCIG00000011561	SND1	100	83.443	ENSACLG00000022897	snd1	98	84.487	Astatotilapia_calliptera
ENSPCIG00000011561	SND1	99	84.268	ENSAMXG00000016318	snd1	98	84.855	Astyanax_mexicanus
ENSPCIG00000011561	SND1	100	96.264	ENSBTAG00000010692	SND1	100	96.264	Bos_taurus
ENSPCIG00000011561	SND1	98	45.993	WBGene00006626	tsn-1	98	46.432	Caenorhabditis_elegans
ENSPCIG00000011561	SND1	100	96.374	ENSCJAG00000017668	SND1	100	96.374	Callithrix_jacchus
ENSPCIG00000011561	SND1	100	96.374	ENSCAFG00000001700	SND1	100	96.374	Canis_familiaris
ENSPCIG00000011561	SND1	100	96.374	ENSCAFG00020021639	SND1	100	96.374	Canis_lupus_dingo
ENSPCIG00000011561	SND1	100	96.484	ENSCHIG00000023390	SND1	100	96.484	Capra_hircus
ENSPCIG00000011561	SND1	73	95.775	ENSTSYG00000004979	SND1	96	95.775	Carlito_syrichta
ENSPCIG00000011561	SND1	99	82.797	ENSCAPG00000010677	SND1	98	82.778	Cavia_aperea
ENSPCIG00000011561	SND1	99	95.318	ENSCPOG00000006251	SND1	99	95.318	Cavia_porcellus
ENSPCIG00000011561	SND1	100	96.484	ENSCCAG00000036847	SND1	100	96.484	Cebus_capucinus
ENSPCIG00000011561	SND1	100	96.484	ENSCATG00000035214	SND1	100	96.484	Cercocebus_atys
ENSPCIG00000011561	SND1	99	95.652	ENSCLAG00000011796	SND1	99	95.652	Chinchilla_lanigera
ENSPCIG00000011561	SND1	100	96.484	ENSCSAG00000010182	SND1	100	96.484	Chlorocebus_sabaeus
ENSPCIG00000011561	SND1	78	89.216	ENSCHOG00000002218	SND1	86	89.216	Choloepus_hoffmanni
ENSPCIG00000011561	SND1	100	92.418	ENSCPBG00000018094	SND1	98	93.386	Chrysemys_picta_bellii
ENSPCIG00000011561	SND1	98	57.412	ENSCING00000000524	-	98	57.412	Ciona_intestinalis
ENSPCIG00000011561	SND1	99	58.086	ENSCSAVG00000008807	-	99	58.232	Ciona_savignyi
ENSPCIG00000011561	SND1	100	96.484	ENSCANG00000035119	SND1	100	96.484	Colobus_angolensis_palliatus
ENSPCIG00000011561	SND1	99	94.426	ENSCGRG00001022514	Snd1	99	94.426	Cricetulus_griseus_chok1gshd
ENSPCIG00000011561	SND1	97	94.570	ENSCGRG00000012277	Snd1	99	94.570	Cricetulus_griseus_crigri
ENSPCIG00000011561	SND1	98	84.228	ENSCSEG00000008661	snd1	98	84.228	Cynoglossus_semilaevis
ENSPCIG00000011561	SND1	100	83.882	ENSCVAG00000010316	snd1	100	83.448	Cyprinodon_variegatus
ENSPCIG00000011561	SND1	100	84.556	ENSDARG00000006766	snd1	97	87.726	Danio_rerio
ENSPCIG00000011561	SND1	97	93.687	ENSDNOG00000006795	SND1	100	93.687	Dasypus_novemcinctus
ENSPCIG00000011561	SND1	99	95.875	ENSDORG00000000336	Snd1	99	95.875	Dipodomys_ordii
ENSPCIG00000011561	SND1	98	49.946	FBgn0035121	Tudor-SN	98	50.054	Drosophila_melanogaster
ENSPCIG00000011561	SND1	90	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSPCIG00000011561	SND1	57	67.027	ENSEBUG00000014201	-	84	75.956	Eptatretus_burgeri
ENSPCIG00000011561	SND1	100	94.816	ENSEASG00005008513	SND1	100	94.816	Equus_asinus_asinus
ENSPCIG00000011561	SND1	100	96.374	ENSECAG00000011451	SND1	100	96.374	Equus_caballus
ENSPCIG00000011561	SND1	100	84.505	ENSEEUG00000014737	SND1	99	84.392	Erinaceus_europaeus
ENSPCIG00000011561	SND1	99	82.127	ENSELUG00000001805	snd1	95	83.055	Esox_lucius
ENSPCIG00000011561	SND1	100	96.374	ENSFCAG00000008289	SND1	100	96.374	Felis_catus
ENSPCIG00000011561	SND1	98	95.754	ENSFDAG00000015881	SND1	99	95.764	Fukomys_damarensis
ENSPCIG00000011561	SND1	99	81.985	ENSFHEG00000004093	snd1	97	84.517	Fundulus_heteroclitus
ENSPCIG00000011561	SND1	68	73.134	ENSGMOG00000018932	snd1	64	74.576	Gadus_morhua
ENSPCIG00000011561	SND1	100	84.101	ENSGAFG00000008421	snd1	99	84.983	Gambusia_affinis
ENSPCIG00000011561	SND1	100	54.289	ENSGACG00000019793	snd1	98	54.757	Gasterosteus_aculeatus
ENSPCIG00000011561	SND1	100	96.374	ENSGGOG00000009614	SND1	100	96.374	Gorilla_gorilla
ENSPCIG00000011561	SND1	99	83.811	ENSHBUG00000019135	snd1	99	84.487	Haplochromis_burtoni
ENSPCIG00000011561	SND1	99	95.541	ENSHGLG00000003618	SND1	99	95.541	Heterocephalus_glaber_female
ENSPCIG00000011561	SND1	99	95.138	ENSHGLG00100012449	SND1	99	95.541	Heterocephalus_glaber_male
ENSPCIG00000011561	SND1	100	82.237	ENSHCOG00000005266	snd1	98	83.445	Hippocampus_comes
ENSPCIG00000011561	SND1	100	82.604	ENSIPUG00000013279	snd1	98	83.630	Ictalurus_punctatus
ENSPCIG00000011561	SND1	99	95.987	ENSSTOG00000002140	SND1	99	95.987	Ictidomys_tridecemlineatus
ENSPCIG00000011561	SND1	100	96.264	ENSJJAG00000009561	Snd1	100	96.264	Jaculus_jaculus
ENSPCIG00000011561	SND1	100	83.882	ENSKMAG00000016997	snd1	98	84.899	Kryptolebias_marmoratus
ENSPCIG00000011561	SND1	100	84.564	ENSLBEG00000013563	snd1	99	83.092	Labrus_bergylta
ENSPCIG00000011561	SND1	99	85.777	ENSLOCG00000015537	snd1	98	85.777	Lepisosteus_oculatus
ENSPCIG00000011561	SND1	100	95.824	ENSLAFG00000009696	SND1	99	95.987	Loxodonta_africana
ENSPCIG00000011561	SND1	100	96.484	ENSMFAG00000038114	SND1	100	96.484	Macaca_fascicularis
ENSPCIG00000011561	SND1	100	96.484	ENSMMUG00000015432	SND1	100	96.484	Macaca_mulatta
ENSPCIG00000011561	SND1	100	96.484	ENSMNEG00000039808	SND1	100	96.610	Macaca_nemestrina
ENSPCIG00000011561	SND1	100	96.374	ENSMLEG00000029040	SND1	100	96.497	Mandrillus_leucophaeus
ENSPCIG00000011561	SND1	99	83.352	ENSMAMG00000011739	snd1	98	84.040	Mastacembelus_armatus
ENSPCIG00000011561	SND1	100	83.443	ENSMZEG00005005681	snd1	98	84.487	Maylandia_zebra
ENSPCIG00000011561	SND1	100	96.154	ENSMICG00000000097	SND1	100	96.154	Microcebus_murinus
ENSPCIG00000011561	SND1	99	95.206	ENSMOCG00000005040	Snd1	99	95.206	Microtus_ochrogaster
ENSPCIG00000011561	SND1	100	83.224	ENSMMOG00000001795	snd1	99	84.093	Mola_mola
ENSPCIG00000011561	SND1	100	99.011	ENSMODG00000015182	SND1	100	99.011	Monodelphis_domestica
ENSPCIG00000011561	SND1	100	83.114	ENSMALG00000012071	snd1	98	83.931	Monopterus_albus
ENSPCIG00000011561	SND1	98	95.084	MGP_CAROLIEiJ_G0028159	Snd1	99	95.095	Mus_caroli
ENSPCIG00000011561	SND1	98	94.972	ENSMUSG00000001424	Snd1	99	94.983	Mus_musculus
ENSPCIG00000011561	SND1	98	94.972	MGP_PahariEiJ_G0021917	Snd1	99	94.983	Mus_pahari
ENSPCIG00000011561	SND1	98	95.084	MGP_SPRETEiJ_G0029159	Snd1	99	95.095	Mus_spretus
ENSPCIG00000011561	SND1	100	95.714	ENSMPUG00000006545	SND1	99	95.875	Mustela_putorius_furo
ENSPCIG00000011561	SND1	97	94.860	ENSMLUG00000017130	SND1	99	94.860	Myotis_lucifugus
ENSPCIG00000011561	SND1	99	95.318	ENSNGAG00000011186	Snd1	99	95.318	Nannospalax_galili
ENSPCIG00000011561	SND1	100	83.333	ENSNBRG00000006681	snd1	98	84.375	Neolamprologus_brichardi
ENSPCIG00000011561	SND1	100	96.264	ENSNLEG00000012263	SND1	100	96.497	Nomascus_leucogenys
ENSPCIG00000011561	SND1	91	100.000	ENSOPRG00000013405	SND1	91	100.000	Ochotona_princeps
ENSPCIG00000011561	SND1	99	95.764	ENSODEG00000011502	SND1	99	95.764	Octodon_degus
ENSPCIG00000011561	SND1	100	83.224	ENSONIG00000011481	snd1	96	84.263	Oreochromis_niloticus
ENSPCIG00000011561	SND1	98	95.270	ENSOANG00000000817	SND1	99	94.537	Ornithorhynchus_anatinus
ENSPCIG00000011561	SND1	100	95.055	ENSOCUG00000001620	SND1	99	95.095	Oryctolagus_cuniculus
ENSPCIG00000011561	SND1	98	83.799	ENSORLG00000015201	snd1	98	83.799	Oryzias_latipes
ENSPCIG00000011561	SND1	98	83.911	ENSORLG00020013991	snd1	98	83.911	Oryzias_latipes_hni
ENSPCIG00000011561	SND1	98	83.911	ENSORLG00015012436	snd1	98	83.911	Oryzias_latipes_hsok
ENSPCIG00000011561	SND1	100	82.895	ENSOMEG00000006406	snd1	98	84.116	Oryzias_melastigma
ENSPCIG00000011561	SND1	100	95.943	ENSOGAG00000013356	SND1	94	95.943	Otolemur_garnettii
ENSPCIG00000011561	SND1	97	94.011	ENSOARG00000002149	SND1	100	94.011	Ovis_aries
ENSPCIG00000011561	SND1	100	96.264	ENSPPAG00000042947	SND1	100	96.264	Pan_paniscus
ENSPCIG00000011561	SND1	100	96.374	ENSPPRG00000004494	SND1	100	96.374	Panthera_pardus
ENSPCIG00000011561	SND1	100	96.264	ENSPTIG00000014214	SND1	100	96.264	Panthera_tigris_altaica
ENSPCIG00000011561	SND1	100	96.264	ENSPTRG00000023911	SND1	100	96.264	Pan_troglodytes
ENSPCIG00000011561	SND1	97	96.606	ENSPANG00000011997	SND1	99	96.606	Papio_anubis
ENSPCIG00000011561	SND1	99	81.918	ENSPKIG00000023494	snd1	98	82.242	Paramormyrops_kingsleyae
ENSPCIG00000011561	SND1	92	82.754	ENSPMGG00000003629	snd1	100	82.754	Periophthalmus_magnuspinnatus
ENSPCIG00000011561	SND1	99	95.095	ENSPEMG00000010240	Snd1	99	95.095	Peromyscus_maniculatus_bairdii
ENSPCIG00000011561	SND1	97	73.785	ENSPMAG00000007915	-	99	73.785	Petromyzon_marinus
ENSPCIG00000011561	SND1	100	83.553	ENSPFOG00000001557	snd1	99	84.427	Poecilia_formosa
ENSPCIG00000011561	SND1	100	83.553	ENSPLAG00000018459	snd1	96	84.427	Poecilia_latipinna
ENSPCIG00000011561	SND1	100	83.991	ENSPMEG00000006803	snd1	99	84.872	Poecilia_mexicana
ENSPCIG00000011561	SND1	100	83.882	ENSPREG00000002189	snd1	99	84.761	Poecilia_reticulata
ENSPCIG00000011561	SND1	92	95.839	ENSPPYG00000017972	SND1	98	95.839	Pongo_abelii
ENSPCIG00000011561	SND1	100	84.505	ENSPCAG00000011305	SND1	99	84.392	Procavia_capensis
ENSPCIG00000011561	SND1	100	96.154	ENSPCOG00000026791	SND1	100	96.271	Propithecus_coquereli
ENSPCIG00000011561	SND1	99	94.314	ENSPVAG00000013945	SND1	99	94.314	Pteropus_vampyrus
ENSPCIG00000011561	SND1	100	83.443	ENSPNYG00000000932	snd1	98	84.487	Pundamilia_nyererei
ENSPCIG00000011561	SND1	100	83.479	ENSPNAG00000001206	snd1	98	84.444	Pygocentrus_nattereri
ENSPCIG00000011561	SND1	98	94.860	ENSRNOG00000031173	Snd1	99	94.872	Rattus_norvegicus
ENSPCIG00000011561	SND1	73	95.677	ENSRBIG00000027782	-	93	95.817	Rhinopithecus_bieti
ENSPCIG00000011561	SND1	100	96.484	ENSRROG00000033020	SND1	100	96.484	Rhinopithecus_roxellana
ENSPCIG00000011561	SND1	100	96.374	ENSSBOG00000032461	SND1	100	96.374	Saimiri_boliviensis_boliviensis
ENSPCIG00000011561	SND1	98	95.383	ENSSHAG00000015359	SND1	100	95.383	Sarcophilus_harrisii
ENSPCIG00000011561	SND1	100	82.263	ENSSFOG00015001103	snd1	98	83.352	Scleropages_formosus
ENSPCIG00000011561	SND1	98	83.669	ENSSMAG00000001932	snd1	93	83.408	Scophthalmus_maximus
ENSPCIG00000011561	SND1	100	83.553	ENSSDUG00000002699	snd1	92	84.427	Seriola_dumerili
ENSPCIG00000011561	SND1	100	76.316	ENSSLDG00000001950	snd1	98	77.086	Seriola_lalandi_dorsalis
ENSPCIG00000011561	SND1	86	98.113	ENSSARG00000004877	SND1	92	98.113	Sorex_araneus
ENSPCIG00000011561	SND1	73	88.174	ENSSPUG00000017586	SND1	96	88.174	Sphenodon_punctatus
ENSPCIG00000011561	SND1	75	84.602	ENSSPAG00000021398	snd1	96	86.736	Stegastes_partitus
ENSPCIG00000011561	SND1	99	96.210	ENSSSCG00000016590	SND1	99	96.210	Sus_scrofa
ENSPCIG00000011561	SND1	99	83.260	ENSTRUG00000014067	snd1	98	83.781	Takifugu_rubripes
ENSPCIG00000011561	SND1	100	83.260	ENSTNIG00000011019	snd1	98	84.004	Tetraodon_nigroviridis
ENSPCIG00000011561	SND1	93	90.448	ENSTBEG00000003999	SND1	100	90.448	Tupaia_belangeri
ENSPCIG00000011561	SND1	100	91.868	ENSTTRG00000006059	SND1	100	91.868	Tursiops_truncatus
ENSPCIG00000011561	SND1	75	84.910	ENSUAMG00000002820	-	87	84.656	Ursus_americanus
ENSPCIG00000011561	SND1	91	97.909	ENSUAMG00000005604	-	93	97.909	Ursus_americanus
ENSPCIG00000011561	SND1	100	96.154	ENSUMAG00000005960	SND1	100	96.154	Ursus_maritimus
ENSPCIG00000011561	SND1	73	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSPCIG00000011561	SND1	100	96.374	ENSVVUG00000007226	SND1	100	96.374	Vulpes_vulpes
ENSPCIG00000011561	SND1	97	84.520	ENSXETG00000023043	snd1	100	84.439	Xenopus_tropicalis
ENSPCIG00000011561	SND1	92	81.235	ENSXCOG00000013629	snd1	99	81.235	Xiphophorus_couchianus
ENSPCIG00000011561	SND1	100	84.101	ENSXMAG00000011469	snd1	99	84.983	Xiphophorus_maculatus