EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPCIG00000015460 (Gene tree)
Gene ID: -
Gene Symbol: SMARCA1
Alias: -
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Phascolarctos_cinereus
Status: putative
Strand: Plus strand
Length: 126443 bases
Position: chrFUWB01001174.1:2270725-2397167
Accession: 11097
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCIP00000020321	ResIII	PF04851.15	3.5e-11	1	1
ENSPCIP00000020309	ResIII	PF04851.15	3.8e-11	1	1
ENSPCIP00000020315	ResIII	PF04851.15	3.8e-11	1	1
ENSPCIP00000020340	ResIII	PF04851.15	4e-11	1	1
ENSPCIP00000020326	ResIII	PF04851.15	9.6e-08	1	1
ENSPCIP00000020321	DEAD	PF00270.29	9.4e-07	1	1
ENSPCIP00000020315	DEAD	PF00270.29	1e-06	1	1
ENSPCIP00000020309	DEAD	PF00270.29	1.1e-06	1	1
ENSPCIP00000020340	DEAD	PF00270.29	1.1e-06	1	1
ENSPCIP00000020326	DEAD	PF00270.29	4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCIT00000025055	SMARCA1-202	4846	-	ENSPCIP00000020315	1008 (aa)	-	-
ENSPCIT00000025041	SMARCA1-201	4566	-	ENSPCIP00000020309	1019 (aa)	-	-
ENSPCIT00000025084	SMARCA1-205	3967	-	ENSPCIP00000020340	1027 (aa)	-	-
ENSPCIT00000025070	SMARCA1-204	4714	-	ENSPCIP00000020326	964 (aa)	-	-
ENSPCIT00000025064	SMARCA1-203	4735	-	ENSPCIP00000020321	971 (aa)	-	-

Gene Model

Click here to download ENSPCIG00000015460's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCIG00000015460's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPCIG00000015460	SMARCA1	53	44.981	ENSPCIG00000030409	CHD1L	63	44.156
ENSPCIG00000015460	SMARCA1	54	47.410	ENSPCIG00000013361	HELLS	65	47.410
ENSPCIG00000015460	SMARCA1	54	44.384	ENSPCIG00000009417	-	54	36.091
ENSPCIG00000015460	SMARCA1	95	88.912	ENSPCIG00000003926	SMARCA5	94	86.834

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCIG00000015460	SMARCA1	98	92.192	ENSG00000102038	SMARCA1	95	92.108	Homo_sapiens
ENSPCIG00000015460	SMARCA1	96	84.631	ENSAPOG00000016035	smarca5	98	84.902	Acanthochromis_polyacanthus
ENSPCIG00000015460	SMARCA1	98	90.801	ENSAMEG00000015218	SMARCA1	95	90.721	Ailuropoda_melanoleuca
ENSPCIG00000015460	SMARCA1	88	85.144	ENSACIG00000016982	smarca5	99	85.379	Amphilophus_citrinellus
ENSPCIG00000015460	SMARCA1	96	84.631	ENSAOCG00000015578	smarca5	94	84.216	Amphiprion_ocellaris
ENSPCIG00000015460	SMARCA1	96	84.631	ENSAPEG00000011117	smarca5	99	84.888	Amphiprion_percula
ENSPCIG00000015460	SMARCA1	96	84.529	ENSATEG00000012894	smarca5	94	84.529	Anabas_testudineus
ENSPCIG00000015460	SMARCA1	96	96.334	ENSAPLG00000013149	SMARCA1	100	96.334	Anas_platyrhynchos
ENSPCIG00000015460	SMARCA1	99	95.171	ENSACAG00000011376	SMARCA1	97	94.597	Anolis_carolinensis
ENSPCIG00000015460	SMARCA1	98	87.187	ENSANAG00000023098	SMARCA1	94	87.113	Aotus_nancymaae
ENSPCIG00000015460	SMARCA1	96	85.041	ENSACLG00000025356	smarca5	94	85.041	Astatotilapia_calliptera
ENSPCIG00000015460	SMARCA1	91	92.043	ENSAMXG00000011227	smarca1	99	93.486	Astyanax_mexicanus
ENSPCIG00000015460	SMARCA1	96	85.159	ENSAMXG00000005709	smarca5	94	85.159	Astyanax_mexicanus
ENSPCIG00000015460	SMARCA1	98	91.675	ENSBTAG00000002292	SMARCA1	98	88.802	Bos_taurus
ENSPCIG00000015460	SMARCA1	98	62.512	WBGene00002169	isw-1	99	62.413	Caenorhabditis_elegans
ENSPCIG00000015460	SMARCA1	98	92.192	ENSCJAG00000002868	SMARCA1	95	92.108	Callithrix_jacchus
ENSPCIG00000015460	SMARCA1	98	82.283	ENSCAFG00000018673	SMARCA1	99	83.765	Canis_familiaris
ENSPCIG00000015460	SMARCA1	98	92.292	ENSCAFG00020001751	SMARCA1	95	92.208	Canis_lupus_dingo
ENSPCIG00000015460	SMARCA1	98	91.892	ENSCHIG00000009837	SMARCA1	94	91.808	Capra_hircus
ENSPCIG00000015460	SMARCA1	98	92.000	ENSTSYG00000004240	SMARCA1	99	91.296	Carlito_syrichta
ENSPCIG00000015460	SMARCA1	98	91.144	ENSCPOG00000013601	SMARCA1	95	91.063	Cavia_porcellus
ENSPCIG00000015460	SMARCA1	98	89.189	ENSCCAG00000030817	SMARCA1	95	89.111	Cebus_capucinus
ENSPCIG00000015460	SMARCA1	97	92.237	ENSCATG00000015921	SMARCA1	97	90.335	Cercocebus_atys
ENSPCIG00000015460	SMARCA1	98	91.592	ENSCLAG00000002171	SMARCA1	95	91.508	Chinchilla_lanigera
ENSPCIG00000015460	SMARCA1	98	92.192	ENSCSAG00000008460	SMARCA1	95	92.108	Chlorocebus_sabaeus
ENSPCIG00000015460	SMARCA1	100	95.780	ENSCPBG00000001146	SMARCA1	96	95.780	Chrysemys_picta_bellii
ENSPCIG00000015460	SMARCA1	97	73.387	ENSCING00000004110	swi/snf	97	73.387	Ciona_intestinalis
ENSPCIG00000015460	SMARCA1	99	72.228	ENSCSAVG00000004620	-	100	74.833	Ciona_savignyi
ENSPCIG00000015460	SMARCA1	98	92.092	ENSCANG00000007183	SMARCA1	95	92.008	Colobus_angolensis_palliatus
ENSPCIG00000015460	SMARCA1	98	91.165	ENSCGRG00001010776	Smarca1	95	90.809	Cricetulus_griseus_chok1gshd
ENSPCIG00000015460	SMARCA1	97	90.071	ENSCGRG00000015301	Smarca1	98	90.254	Cricetulus_griseus_crigri
ENSPCIG00000015460	SMARCA1	96	84.631	ENSCSEG00000000328	smarca5	94	84.631	Cynoglossus_semilaevis
ENSPCIG00000015460	SMARCA1	96	84.221	ENSCVAG00000008668	smarca5	99	84.552	Cyprinodon_variegatus
ENSPCIG00000015460	SMARCA1	97	89.268	ENSDARG00000012776	smarca1	98	88.322	Danio_rerio
ENSPCIG00000015460	SMARCA1	98	83.049	ENSDARG00000052348	smarca5	96	83.049	Danio_rerio
ENSPCIG00000015460	SMARCA1	97	91.522	ENSDNOG00000004315	SMARCA1	98	89.515	Dasypus_novemcinctus
ENSPCIG00000015460	SMARCA1	97	91.131	ENSDORG00000009270	Smarca1	97	89.360	Dipodomys_ordii
ENSPCIG00000015460	SMARCA1	94	75.315	FBgn0011604	Iswi	98	73.294	Drosophila_melanogaster
ENSPCIG00000015460	SMARCA1	85	88.393	ENSETEG00000017426	SMARCA1	86	88.393	Echinops_telfairi
ENSPCIG00000015460	SMARCA1	98	81.864	ENSEBUG00000001239	smarca5	98	81.864	Eptatretus_burgeri
ENSPCIG00000015460	SMARCA1	97	87.691	ENSEASG00005008218	SMARCA1	100	88.396	Equus_asinus_asinus
ENSPCIG00000015460	SMARCA1	98	92.192	ENSECAG00000012106	SMARCA1	94	92.108	Equus_caballus
ENSPCIG00000015460	SMARCA1	79	91.722	ENSEEUG00000014927	SMARCA1	83	91.722	Erinaceus_europaeus
ENSPCIG00000015460	SMARCA1	98	90.090	ENSELUG00000010515	smarca1	98	90.482	Esox_lucius
ENSPCIG00000015460	SMARCA1	98	91.908	ENSFCAG00000018496	SMARCA1	95	91.908	Felis_catus
ENSPCIG00000015460	SMARCA1	91	96.386	ENSFALG00000000209	SMARCA1	98	96.491	Ficedula_albicollis
ENSPCIG00000015460	SMARCA1	97	90.827	ENSFDAG00000009818	SMARCA1	97	90.827	Fukomys_damarensis
ENSPCIG00000015460	SMARCA1	96	84.318	ENSFHEG00000007687	smarca5	94	84.318	Fundulus_heteroclitus
ENSPCIG00000015460	SMARCA1	98	95.939	ENSGALG00000008431	SMARCA1	99	94.444	Gallus_gallus
ENSPCIG00000015460	SMARCA1	96	84.521	ENSGAFG00000017731	smarca5	95	84.521	Gambusia_affinis
ENSPCIG00000015460	SMARCA1	95	97.531	ENSGAGG00000023575	SMARCA1	100	97.531	Gopherus_agassizii
ENSPCIG00000015460	SMARCA1	73	86.441	ENSGGOG00000012841	-	95	86.441	Gorilla_gorilla
ENSPCIG00000015460	SMARCA1	98	90.991	ENSHGLG00000003080	SMARCA1	95	90.909	Heterocephalus_glaber_female
ENSPCIG00000015460	SMARCA1	98	90.609	ENSHGLG00100001102	SMARCA1	100	90.609	Heterocephalus_glaber_male
ENSPCIG00000015460	SMARCA1	96	84.734	ENSHCOG00000005458	smarca5	95	84.420	Hippocampus_comes
ENSPCIG00000015460	SMARCA1	99	82.690	ENSIPUG00000005229	SMARCA5	99	82.690	Ictalurus_punctatus
ENSPCIG00000015460	SMARCA1	98	89.279	ENSIPUG00000016905	Smarca1	99	89.990	Ictalurus_punctatus
ENSPCIG00000015460	SMARCA1	98	92.208	ENSSTOG00000014524	SMARCA1	95	92.208	Ictidomys_tridecemlineatus
ENSPCIG00000015460	SMARCA1	98	90.855	ENSJJAG00000002593	Smarca1	97	89.448	Jaculus_jaculus
ENSPCIG00000015460	SMARCA1	96	84.426	ENSKMAG00000003777	smarca5	95	84.114	Kryptolebias_marmoratus
ENSPCIG00000015460	SMARCA1	97	84.024	ENSLBEG00000018112	smarca5	95	84.024	Labrus_bergylta
ENSPCIG00000015460	SMARCA1	92	85.484	ENSLBEG00000013295	SMARCA1	100	86.473	Labrus_bergylta
ENSPCIG00000015460	SMARCA1	98	93.912	ENSLACG00000016697	SMARCA1	99	93.912	Latimeria_chalumnae
ENSPCIG00000015460	SMARCA1	98	91.733	ENSLOCG00000014591	smarca1	98	91.733	Lepisosteus_oculatus
ENSPCIG00000015460	SMARCA1	98	91.650	ENSLAFG00000000896	SMARCA1	100	91.650	Loxodonta_africana
ENSPCIG00000015460	SMARCA1	98	92.192	ENSMFAG00000002117	SMARCA1	98	92.065	Macaca_fascicularis
ENSPCIG00000015460	SMARCA1	97	92.237	ENSMMUG00000008818	SMARCA1	99	93.067	Macaca_mulatta
ENSPCIG00000015460	SMARCA1	97	92.237	ENSMNEG00000041768	SMARCA1	98	92.065	Macaca_nemestrina
ENSPCIG00000015460	SMARCA1	98	92.192	ENSMLEG00000043198	SMARCA1	95	92.108	Mandrillus_leucophaeus
ENSPCIG00000015460	SMARCA1	96	84.631	ENSMAMG00000014294	smarca5	94	84.631	Mastacembelus_armatus
ENSPCIG00000015460	SMARCA1	96	85.041	ENSMZEG00005009369	smarca5	94	85.041	Maylandia_zebra
ENSPCIG00000015460	SMARCA1	98	95.064	ENSMGAG00000007042	SMARCA1	99	95.064	Meleagris_gallopavo
ENSPCIG00000015460	SMARCA1	97	90.928	ENSMAUG00000008133	Smarca1	97	88.813	Mesocricetus_auratus
ENSPCIG00000015460	SMARCA1	98	92.408	ENSMICG00000015768	SMARCA1	95	92.408	Microcebus_murinus
ENSPCIG00000015460	SMARCA1	98	91.009	ENSMOCG00000009464	Smarca1	95	90.656	Microtus_ochrogaster
ENSPCIG00000015460	SMARCA1	96	82.992	ENSMMOG00000005547	smarca5	98	82.992	Mola_mola
ENSPCIG00000015460	SMARCA1	99	98.427	ENSMODG00000013187	-	98	98.427	Monodelphis_domestica
ENSPCIG00000015460	SMARCA1	96	84.324	ENSMALG00000002081	smarca5	96	84.336	Monopterus_albus
ENSPCIG00000015460	SMARCA1	98	90.656	MGP_CAROLIEiJ_G0033034	Smarca1	97	88.987	Mus_caroli
ENSPCIG00000015460	SMARCA1	98	90.755	ENSMUSG00000031099	Smarca1	97	89.086	Mus_musculus
ENSPCIG00000015460	SMARCA1	98	90.557	MGP_PahariEiJ_G0031579	Smarca1	97	88.889	Mus_pahari
ENSPCIG00000015460	SMARCA1	98	90.755	MGP_SPRETEiJ_G0034192	Smarca1	97	89.086	Mus_spretus
ENSPCIG00000015460	SMARCA1	98	90.999	ENSMPUG00000017423	SMARCA1	89	90.918	Mustela_putorius_furo
ENSPCIG00000015460	SMARCA1	98	89.360	ENSMLUG00000029614	SMARCA1	95	89.360	Myotis_lucifugus
ENSPCIG00000015460	SMARCA1	97	91.641	ENSNGAG00000006492	Smarca1	97	89.391	Nannospalax_galili
ENSPCIG00000015460	SMARCA1	96	85.041	ENSNBRG00000004463	smarca5	98	85.041	Neolamprologus_brichardi
ENSPCIG00000015460	SMARCA1	98	91.176	ENSNLEG00000015179	SMARCA1	98	91.353	Nomascus_leucogenys
ENSPCIG00000015460	SMARCA1	93	89.076	ENSMEUG00000008819	SMARCA1	100	89.076	Notamacropus_eugenii
ENSPCIG00000015460	SMARCA1	97	90.836	ENSODEG00000012163	SMARCA1	97	89.279	Octodon_degus
ENSPCIG00000015460	SMARCA1	96	85.041	ENSONIG00000009993	smarca5	94	85.041	Oreochromis_niloticus
ENSPCIG00000015460	SMARCA1	95	98.457	ENSOANG00000002862	SMARCA1	100	98.457	Ornithorhynchus_anatinus
ENSPCIG00000015460	SMARCA1	98	91.792	ENSOCUG00000001047	SMARCA1	95	91.708	Oryctolagus_cuniculus
ENSPCIG00000015460	SMARCA1	96	85.143	ENSORLG00000021998	smarca5	94	85.143	Oryzias_latipes
ENSPCIG00000015460	SMARCA1	96	85.041	ENSORLG00020017679	smarca5	94	85.041	Oryzias_latipes_hni
ENSPCIG00000015460	SMARCA1	96	85.143	ENSORLG00015017210	smarca5	94	85.143	Oryzias_latipes_hsok
ENSPCIG00000015460	SMARCA1	96	85.143	ENSOMEG00000000086	smarca5	94	85.143	Oryzias_melastigma
ENSPCIG00000015460	SMARCA1	97	91.423	ENSOGAG00000004399	SMARCA1	97	89.474	Otolemur_garnettii
ENSPCIG00000015460	SMARCA1	98	90.721	ENSOARG00000014638	SMARCA1	100	92.551	Ovis_aries
ENSPCIG00000015460	SMARCA1	98	92.192	ENSPPAG00000034647	SMARCA1	95	92.108	Pan_paniscus
ENSPCIG00000015460	SMARCA1	98	92.108	ENSPPRG00000008929	SMARCA1	95	92.108	Panthera_pardus
ENSPCIG00000015460	SMARCA1	98	90.265	ENSPTIG00000000915	SMARCA1	98	90.265	Panthera_tigris_altaica
ENSPCIG00000015460	SMARCA1	98	92.192	ENSPTRG00000049876	SMARCA1	97	90.335	Pan_troglodytes
ENSPCIG00000015460	SMARCA1	98	92.192	ENSPANG00000003871	SMARCA1	95	92.108	Papio_anubis
ENSPCIG00000015460	SMARCA1	94	89.789	ENSPKIG00000013411	smarca1	96	89.811	Paramormyrops_kingsleyae
ENSPCIG00000015460	SMARCA1	98	95.854	ENSPSIG00000010101	SMARCA1	100	97.325	Pelodiscus_sinensis
ENSPCIG00000015460	SMARCA1	97	91.335	ENSPEMG00000017503	Smarca1	97	89.096	Peromyscus_maniculatus_bairdii
ENSPCIG00000015460	SMARCA1	96	84.734	ENSPFOG00000007649	smarca5	94	84.734	Poecilia_formosa
ENSPCIG00000015460	SMARCA1	96	84.734	ENSPLAG00000003363	smarca5	94	84.734	Poecilia_latipinna
ENSPCIG00000015460	SMARCA1	96	84.836	ENSPMEG00000019849	smarca5	94	84.836	Poecilia_mexicana
ENSPCIG00000015460	SMARCA1	96	84.836	ENSPREG00000023250	smarca5	94	84.836	Poecilia_reticulata
ENSPCIG00000015460	SMARCA1	98	89.389	ENSPPYG00000020703	SMARCA1	95	89.311	Pongo_abelii
ENSPCIG00000015460	SMARCA1	78	84.513	ENSPCOG00000020722	SMARCA1	94	88.399	Propithecus_coquereli
ENSPCIG00000015460	SMARCA1	92	91.784	ENSPVAG00000003805	SMARCA1	97	83.170	Pteropus_vampyrus
ENSPCIG00000015460	SMARCA1	61	87.465	ENSPNYG00000012299	smarca5	89	87.465	Pundamilia_nyererei
ENSPCIG00000015460	SMARCA1	98	91.109	ENSRNOG00000003762	Smarca1	95	91.109	Rattus_norvegicus
ENSPCIG00000015460	SMARCA1	98	92.092	ENSRROG00000034167	SMARCA1	95	92.008	Rhinopithecus_roxellana
ENSPCIG00000015460	SMARCA1	99	90.748	ENSSBOG00000020641	SMARCA1	100	92.857	Saimiri_boliviensis_boliviensis
ENSPCIG00000015460	SMARCA1	95	90.236	ENSSHAG00000013518	SMARCA1	99	90.236	Sarcophilus_harrisii
ENSPCIG00000015460	SMARCA1	98	90.010	ENSSFOG00015009043	smarca1	98	90.010	Scleropages_formosus
ENSPCIG00000015460	SMARCA1	97	83.551	ENSSFOG00015016794	smarca5	100	84.845	Scleropages_formosus
ENSPCIG00000015460	SMARCA1	96	84.221	ENSSMAG00000004801	smarca5	94	84.221	Scophthalmus_maximus
ENSPCIG00000015460	SMARCA1	96	84.221	ENSSDUG00000020690	smarca5	94	84.221	Seriola_dumerili
ENSPCIG00000015460	SMARCA1	96	84.221	ENSSLDG00000025190	smarca5	94	84.221	Seriola_lalandi_dorsalis
ENSPCIG00000015460	SMARCA1	90	84.489	ENSSARG00000000842	SMARCA1	92	84.489	Sorex_araneus
ENSPCIG00000015460	SMARCA1	99	95.000	ENSSPUG00000000590	SMARCA1	99	93.197	Sphenodon_punctatus
ENSPCIG00000015460	SMARCA1	96	84.318	ENSSPAG00000002894	smarca5	98	84.382	Stegastes_partitus
ENSPCIG00000015460	SMARCA1	97	92.221	ENSSSCG00000012649	SMARCA1	98	90.049	Sus_scrofa
ENSPCIG00000015460	SMARCA1	96	95.723	ENSTGUG00000003899	-	100	95.723	Taeniopygia_guttata
ENSPCIG00000015460	SMARCA1	96	84.725	ENSTRUG00000014094	smarca5	95	84.725	Takifugu_rubripes
ENSPCIG00000015460	SMARCA1	96	83.811	ENSTNIG00000017717	smarca5	94	83.503	Tetraodon_nigroviridis
ENSPCIG00000015460	SMARCA1	97	85.282	ENSTBEG00000014973	SMARCA1	99	85.282	Tupaia_belangeri
ENSPCIG00000015460	SMARCA1	97	87.830	ENSTTRG00000006168	SMARCA1	99	87.830	Tursiops_truncatus
ENSPCIG00000015460	SMARCA1	98	91.792	ENSUAMG00000020201	SMARCA1	95	91.708	Ursus_americanus
ENSPCIG00000015460	SMARCA1	97	87.845	ENSUMAG00000004073	SMARCA1	98	91.148	Ursus_maritimus
ENSPCIG00000015460	SMARCA1	76	92.605	ENSVPAG00000010492	-	79	92.605	Vicugna_pacos
ENSPCIG00000015460	SMARCA1	98	92.300	ENSVVUG00000008878	SMARCA1	100	93.215	Vulpes_vulpes
ENSPCIG00000015460	SMARCA1	98	92.578	ENSXETG00000001526	smarca1	100	92.578	Xenopus_tropicalis
ENSPCIG00000015460	SMARCA1	96	84.420	ENSXCOG00000011170	smarca5	97	84.420	Xiphophorus_couchianus
ENSPCIG00000015460	SMARCA1	96	84.420	ENSXMAG00000009678	smarca5	99	85.173	Xiphophorus_maculatus