EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPCIG00000017680 (Gene tree)
Gene ID: 110195869
Gene Symbol: PSPC1
Alias: -
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Phascolarctos_cinereus
Status: putative
Strand: Plus strand
Length: 59020 bases
Position: chrFUWB01000741.1:442087-501106
Accession: 20320
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCIP00000023347	RRM_1	PF00076.22	3.4e-32	1	2
ENSPCIP00000023347	RRM_1	PF00076.22	3.4e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCIT00000028792	PSPC1-201	2128	-	ENSPCIP00000023347	522 (aa)	-	UPI0000F2CF7B

Gene Model

Click here to download ENSPCIG00000017680's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCIG00000017680's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPCIG00000017680	PSPC1	91	58.607	ENSPCIG00000000923	SFPQ	58	65.897
ENSPCIG00000017680	PSPC1	91	59.664	ENSPCIG00000026515	NONO	80	65.963

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCIG00000017680	PSPC1	100	96.935	ENSG00000121390	PSPC1	99	96.935	Homo_sapiens
ENSPCIG00000017680	PSPC1	91	69.450	ENSAPOG00000015946	pspc1	84	71.272	Acanthochromis_polyacanthus
ENSPCIG00000017680	PSPC1	100	96.743	ENSAMEG00000017420	PSPC1	99	96.743	Ailuropoda_melanoleuca
ENSPCIG00000017680	PSPC1	92	60.161	ENSACIG00000018695	pspc1	92	57.746	Amphilophus_citrinellus
ENSPCIG00000017680	PSPC1	88	69.937	ENSAOCG00000005279	pspc1	83	70.833	Amphiprion_ocellaris
ENSPCIG00000017680	PSPC1	88	70.378	ENSAPEG00000015927	pspc1	84	70.833	Amphiprion_percula
ENSPCIG00000017680	PSPC1	88	58.386	ENSATEG00000004878	pspc1	81	60.227	Anabas_testudineus
ENSPCIG00000017680	PSPC1	89	60.515	ENSAPLG00000003643	SFPQ	80	62.269	Anas_platyrhynchos
ENSPCIG00000017680	PSPC1	77	92.574	ENSAPLG00000006246	PSPC1	100	92.574	Anas_platyrhynchos
ENSPCIG00000017680	PSPC1	99	84.190	ENSACAG00000002093	PSPC1	99	84.381	Anolis_carolinensis
ENSPCIG00000017680	PSPC1	89	52.643	ENSACAG00000013307	-	56	64.738	Anolis_carolinensis
ENSPCIG00000017680	PSPC1	100	96.743	ENSANAG00000000059	PSPC1	99	96.743	Aotus_nancymaae
ENSPCIG00000017680	PSPC1	100	57.116	ENSACLG00000027220	pspc1	87	58.672	Astatotilapia_calliptera
ENSPCIG00000017680	PSPC1	100	62.976	ENSAMXG00000036881	pspc1	83	71.460	Astyanax_mexicanus
ENSPCIG00000017680	PSPC1	100	94.455	ENSBTAG00000003934	PSPC1	99	93.499	Bos_taurus
ENSPCIG00000017680	PSPC1	100	97.126	ENSCJAG00000004554	PSPC1	99	97.126	Callithrix_jacchus
ENSPCIG00000017680	PSPC1	100	96.552	ENSCAFG00020002009	PSPC1	99	96.552	Canis_lupus_dingo
ENSPCIG00000017680	PSPC1	100	94.455	ENSCHIG00000016708	PSPC1	99	93.499	Capra_hircus
ENSPCIG00000017680	PSPC1	80	86.967	ENSTSYG00000032882	PSPC1	93	84.323	Carlito_syrichta
ENSPCIG00000017680	PSPC1	100	95.785	ENSCPOG00000000395	PSPC1	98	96.623	Cavia_porcellus
ENSPCIG00000017680	PSPC1	100	96.935	ENSCCAG00000033498	PSPC1	99	96.935	Cebus_capucinus
ENSPCIG00000017680	PSPC1	100	96.935	ENSCATG00000036434	PSPC1	99	96.935	Cercocebus_atys
ENSPCIG00000017680	PSPC1	88	87.257	ENSCLAG00000005241	PSPC1	99	87.257	Chinchilla_lanigera
ENSPCIG00000017680	PSPC1	100	90.996	ENSCHOG00000008913	PSPC1	99	90.805	Choloepus_hoffmanni
ENSPCIG00000017680	PSPC1	99	86.882	ENSCPBG00000020859	PSPC1	89	94.017	Chrysemys_picta_bellii
ENSPCIG00000017680	PSPC1	59	58.766	ENSCSAVG00000003533	-	53	61.786	Ciona_savignyi
ENSPCIG00000017680	PSPC1	78	84.198	ENSCANG00000018948	PSPC1	87	99.618	Colobus_angolensis_palliatus
ENSPCIG00000017680	PSPC1	100	95.977	ENSCGRG00001018368	Pspc1	99	95.977	Cricetulus_griseus_chok1gshd
ENSPCIG00000017680	PSPC1	100	95.977	ENSCGRG00000011724	Pspc1	99	95.977	Cricetulus_griseus_crigri
ENSPCIG00000017680	PSPC1	87	66.307	ENSCVAG00000007679	-	83	66.741	Cyprinodon_variegatus
ENSPCIG00000017680	PSPC1	100	66.296	ENSDARG00000006621	pspc1	100	67.150	Danio_rerio
ENSPCIG00000017680	PSPC1	100	96.169	ENSDNOG00000011078	PSPC1	99	96.169	Dasypus_novemcinctus
ENSPCIG00000017680	PSPC1	100	93.870	ENSDORG00000016050	Pspc1	99	93.870	Dipodomys_ordii
ENSPCIG00000017680	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSPCIG00000017680	PSPC1	88	59.091	ENSEBUG00000003964	-	62	71.965	Eptatretus_burgeri
ENSPCIG00000017680	PSPC1	60	45.238	ENSEBUG00000010133	pspc1	78	48.485	Eptatretus_burgeri
ENSPCIG00000017680	PSPC1	100	96.169	ENSEASG00005000119	PSPC1	99	96.169	Equus_asinus_asinus
ENSPCIG00000017680	PSPC1	100	96.169	ENSECAG00000017286	PSPC1	99	96.169	Equus_caballus
ENSPCIG00000017680	PSPC1	73	90.164	ENSEEUG00000011288	-	87	80.997	Erinaceus_europaeus
ENSPCIG00000017680	PSPC1	92	70.204	ENSELUG00000003746	pspc1	81	80.178	Esox_lucius
ENSPCIG00000017680	PSPC1	100	96.552	ENSFCAG00000027841	PSPC1	99	96.552	Felis_catus
ENSPCIG00000017680	PSPC1	99	86.807	ENSFALG00000008750	PSPC1	99	86.807	Ficedula_albicollis
ENSPCIG00000017680	PSPC1	100	94.061	ENSFDAG00000002617	PSPC1	99	94.061	Fukomys_damarensis
ENSPCIG00000017680	PSPC1	88	66.738	ENSGMOG00000015074	pspc1	91	63.340	Gadus_morhua
ENSPCIG00000017680	PSPC1	99	86.364	ENSGALG00000017142	PSPC1	89	93.590	Gallus_gallus
ENSPCIG00000017680	PSPC1	66	74.785	ENSGAFG00000006327	pspc1	72	74.785	Gambusia_affinis
ENSPCIG00000017680	PSPC1	88	65.733	ENSGACG00000014901	pspc1	92	73.414	Gasterosteus_aculeatus
ENSPCIG00000017680	PSPC1	89	59.657	ENSGAGG00000017325	-	56	68.033	Gopherus_agassizii
ENSPCIG00000017680	PSPC1	99	86.882	ENSGAGG00000019164	PSPC1	89	94.017	Gopherus_agassizii
ENSPCIG00000017680	PSPC1	100	96.743	ENSGGOG00000003414	PSPC1	99	96.743	Gorilla_gorilla
ENSPCIG00000017680	PSPC1	100	64.444	ENSHBUG00000001139	pspc1	87	69.742	Haplochromis_burtoni
ENSPCIG00000017680	PSPC1	100	95.785	ENSHGLG00000018811	PSPC1	99	95.785	Heterocephalus_glaber_female
ENSPCIG00000017680	PSPC1	67	92.550	ENSHGLG00100007962	PSPC1	99	92.550	Heterocephalus_glaber_male
ENSPCIG00000017680	PSPC1	73	71.018	ENSHCOG00000013251	pspc1	83	70.321	Hippocampus_comes
ENSPCIG00000017680	PSPC1	90	72.614	ENSIPUG00000013192	pspc1	90	72.199	Ictalurus_punctatus
ENSPCIG00000017680	PSPC1	100	96.552	ENSSTOG00000026833	PSPC1	98	97.662	Ictidomys_tridecemlineatus
ENSPCIG00000017680	PSPC1	100	95.977	ENSJJAG00000018334	Pspc1	99	95.977	Jaculus_jaculus
ENSPCIG00000017680	PSPC1	88	55.508	ENSKMAG00000013525	-	90	52.965	Kryptolebias_marmoratus
ENSPCIG00000017680	PSPC1	90	66.194	ENSLBEG00000004474	pspc1	76	70.960	Labrus_bergylta
ENSPCIG00000017680	PSPC1	100	75.556	ENSLACG00000010762	PSPC1	88	84.267	Latimeria_chalumnae
ENSPCIG00000017680	PSPC1	88	83.731	ENSLOCG00000010832	pspc1	91	83.731	Lepisosteus_oculatus
ENSPCIG00000017680	PSPC1	100	95.977	ENSLAFG00000010968	PSPC1	99	95.977	Loxodonta_africana
ENSPCIG00000017680	PSPC1	100	96.743	ENSMFAG00000032728	PSPC1	99	96.743	Macaca_fascicularis
ENSPCIG00000017680	PSPC1	100	96.743	ENSMMUG00000020262	PSPC1	99	96.743	Macaca_mulatta
ENSPCIG00000017680	PSPC1	100	96.743	ENSMNEG00000027401	PSPC1	99	96.743	Macaca_nemestrina
ENSPCIG00000017680	PSPC1	100	97.744	ENSMLEG00000039043	PSPC1	94	97.744	Mandrillus_leucophaeus
ENSPCIG00000017680	PSPC1	88	67.835	ENSMAMG00000004333	pspc1	82	69.584	Mastacembelus_armatus
ENSPCIG00000017680	PSPC1	100	57.116	ENSMZEG00005005726	pspc1	87	58.672	Maylandia_zebra
ENSPCIG00000017680	PSPC1	78	92.365	ENSMGAG00000015134	PSPC1	100	92.365	Meleagris_gallopavo
ENSPCIG00000017680	PSPC1	88	90.889	ENSMAUG00000021067	Pspc1	99	90.889	Mesocricetus_auratus
ENSPCIG00000017680	PSPC1	100	96.552	ENSMICG00000013970	PSPC1	99	96.552	Microcebus_murinus
ENSPCIG00000017680	PSPC1	100	95.977	ENSMOCG00000006060	Pspc1	99	95.977	Microtus_ochrogaster
ENSPCIG00000017680	PSPC1	92	43.050	ENSMMOG00000004352	pspc1	62	50.862	Mola_mola
ENSPCIG00000017680	PSPC1	93	99.793	ENSMODG00000008029	PSPC1	78	99.793	Monodelphis_domestica
ENSPCIG00000017680	PSPC1	88	69.957	ENSMALG00000008914	pspc1	89	67.296	Monopterus_albus
ENSPCIG00000017680	PSPC1	100	95.985	MGP_CAROLIEiJ_G0019341	Pspc1	99	96.537	Mus_caroli
ENSPCIG00000017680	PSPC1	100	96.176	ENSMUSG00000021938	Pspc1	99	96.537	Mus_musculus
ENSPCIG00000017680	PSPC1	100	95.985	MGP_PahariEiJ_G0030359	Pspc1	99	96.537	Mus_pahari
ENSPCIG00000017680	PSPC1	100	95.985	MGP_SPRETEiJ_G0020232	Pspc1	99	96.320	Mus_spretus
ENSPCIG00000017680	PSPC1	100	96.169	ENSMPUG00000013347	PSPC1	99	96.169	Mustela_putorius_furo
ENSPCIG00000017680	PSPC1	100	94.667	ENSMLUG00000017663	PSPC1	99	93.905	Myotis_lucifugus
ENSPCIG00000017680	PSPC1	100	95.977	ENSNGAG00000011271	Pspc1	99	95.977	Nannospalax_galili
ENSPCIG00000017680	PSPC1	74	63.568	ENSNBRG00000014059	pspc1	76	68.902	Neolamprologus_brichardi
ENSPCIG00000017680	PSPC1	100	96.935	ENSNLEG00000001294	PSPC1	99	96.935	Nomascus_leucogenys
ENSPCIG00000017680	PSPC1	100	79.119	ENSMEUG00000000476	PSPC1	99	79.119	Notamacropus_eugenii
ENSPCIG00000017680	PSPC1	100	83.939	ENSODEG00000019012	-	99	84.895	Octodon_degus
ENSPCIG00000017680	PSPC1	100	84.866	ENSODEG00000007817	-	99	79.735	Octodon_degus
ENSPCIG00000017680	PSPC1	100	64.103	ENSONIG00000012010	pspc1	87	68.856	Oreochromis_niloticus
ENSPCIG00000017680	PSPC1	100	66.221	ENSOANG00000011381	-	99	63.550	Ornithorhynchus_anatinus
ENSPCIG00000017680	PSPC1	76	97.494	ENSOANG00000009017	-	100	97.494	Ornithorhynchus_anatinus
ENSPCIG00000017680	PSPC1	100	96.935	ENSOCUG00000006153	PSPC1	99	96.935	Oryctolagus_cuniculus
ENSPCIG00000017680	PSPC1	88	70.213	ENSORLG00000004232	-	86	66.447	Oryzias_latipes
ENSPCIG00000017680	PSPC1	90	69.102	ENSORLG00020000578	PSPC1	85	67.108	Oryzias_latipes_hni
ENSPCIG00000017680	PSPC1	88	70.638	ENSORLG00015017480	pspc1	85	67.550	Oryzias_latipes_hsok
ENSPCIG00000017680	PSPC1	100	97.318	ENSOGAG00000012643	PSPC1	99	97.318	Otolemur_garnettii
ENSPCIG00000017680	PSPC1	100	90.076	ENSOARG00000014163	PSPC1	99	90.076	Ovis_aries
ENSPCIG00000017680	PSPC1	89	91.202	ENSPPAG00000009836	PSPC1	96	97.059	Pan_paniscus
ENSPCIG00000017680	PSPC1	100	96.552	ENSPPRG00000008833	PSPC1	99	96.552	Panthera_pardus
ENSPCIG00000017680	PSPC1	100	81.992	ENSPTIG00000016917	PSPC1	99	81.992	Panthera_tigris_altaica
ENSPCIG00000017680	PSPC1	98	95.517	ENSPTRG00000005677	PSPC1	99	96.907	Pan_troglodytes
ENSPCIG00000017680	PSPC1	100	96.935	ENSPANG00000001992	PSPC1	99	96.935	Papio_anubis
ENSPCIG00000017680	PSPC1	82	77.855	ENSPKIG00000003578	pspc1	81	77.189	Paramormyrops_kingsleyae
ENSPCIG00000017680	PSPC1	99	86.064	ENSPSIG00000005168	PSPC1	89	93.376	Pelodiscus_sinensis
ENSPCIG00000017680	PSPC1	59	70.064	ENSPMGG00000015135	pspc1	86	70.096	Periophthalmus_magnuspinnatus
ENSPCIG00000017680	PSPC1	100	96.360	ENSPEMG00000015214	Pspc1	99	96.360	Peromyscus_maniculatus_bairdii
ENSPCIG00000017680	PSPC1	95	66.148	ENSPFOG00000003362	pspc1	93	66.533	Poecilia_formosa
ENSPCIG00000017680	PSPC1	95	66.148	ENSPLAG00000011540	pspc1	92	66.533	Poecilia_latipinna
ENSPCIG00000017680	PSPC1	70	64.054	ENSPLAG00000004407	-	53	64.110	Poecilia_latipinna
ENSPCIG00000017680	PSPC1	69	65.110	ENSPMEG00000001025	-	52	65.110	Poecilia_mexicana
ENSPCIG00000017680	PSPC1	95	65.759	ENSPMEG00000008322	pspc1	92	66.132	Poecilia_mexicana
ENSPCIG00000017680	PSPC1	95	65.759	ENSPREG00000007786	pspc1	92	66.132	Poecilia_reticulata
ENSPCIG00000017680	PSPC1	100	96.743	ENSPPYG00000005186	PSPC1	99	96.743	Pongo_abelii
ENSPCIG00000017680	PSPC1	66	99.387	ENSPCAG00000008314	-	66	99.387	Procavia_capensis
ENSPCIG00000017680	PSPC1	100	92.720	ENSPCOG00000014364	PSPC1	99	92.720	Propithecus_coquereli
ENSPCIG00000017680	PSPC1	100	92.146	ENSPVAG00000005036	PSPC1	99	92.529	Pteropus_vampyrus
ENSPCIG00000017680	PSPC1	100	57.196	ENSPNYG00000008893	pspc1	87	58.672	Pundamilia_nyererei
ENSPCIG00000017680	PSPC1	100	67.039	ENSPNAG00000016511	pspc1	92	70.902	Pygocentrus_nattereri
ENSPCIG00000017680	PSPC1	100	96.169	ENSRNOG00000020782	Pspc1	99	96.746	Rattus_norvegicus
ENSPCIG00000017680	PSPC1	93	97.125	ENSRBIG00000036057	PSPC1	100	97.125	Rhinopithecus_bieti
ENSPCIG00000017680	PSPC1	100	97.126	ENSRROG00000036334	PSPC1	99	97.126	Rhinopithecus_roxellana
ENSPCIG00000017680	PSPC1	79	86.441	ENSSBOG00000028172	PSPC1	90	94.928	Saimiri_boliviensis_boliviensis
ENSPCIG00000017680	PSPC1	100	94.847	ENSSHAG00000004696	PSPC1	99	94.847	Sarcophilus_harrisii
ENSPCIG00000017680	PSPC1	82	78.689	ENSSFOG00015001395	pspc1	90	78.140	Scleropages_formosus
ENSPCIG00000017680	PSPC1	95	63.810	ENSSMAG00000001761	pspc1	85	74.425	Scophthalmus_maximus
ENSPCIG00000017680	PSPC1	88	69.371	ENSSDUG00000010651	pspc1	88	67.951	Seriola_dumerili
ENSPCIG00000017680	PSPC1	88	64.719	ENSSLDG00000004284	pspc1	87	60.217	Seriola_lalandi_dorsalis
ENSPCIG00000017680	PSPC1	100	87.356	ENSSARG00000000888	PSPC1	99	87.931	Sorex_araneus
ENSPCIG00000017680	PSPC1	89	53.361	ENSSPUG00000001136	-	53	61.345	Sphenodon_punctatus
ENSPCIG00000017680	PSPC1	99	74.621	ENSSPUG00000008550	PSPC1	89	80.597	Sphenodon_punctatus
ENSPCIG00000017680	PSPC1	88	69.485	ENSSPAG00000001921	pspc1	82	71.053	Stegastes_partitus
ENSPCIG00000017680	PSPC1	100	94.253	ENSSSCG00000009569	PSPC1	99	94.444	Sus_scrofa
ENSPCIG00000017680	PSPC1	89	93.790	ENSTGUG00000011295	PSPC1	100	93.790	Taeniopygia_guttata
ENSPCIG00000017680	PSPC1	88	63.270	ENSTRUG00000011335	pspc1	77	66.180	Takifugu_rubripes
ENSPCIG00000017680	PSPC1	88	65.236	ENSTNIG00000010358	pspc1	90	64.399	Tetraodon_nigroviridis
ENSPCIG00000017680	PSPC1	100	76.054	ENSTBEG00000002361	PSPC1	99	74.904	Tupaia_belangeri
ENSPCIG00000017680	PSPC1	100	95.211	ENSTTRG00000003343	PSPC1	99	94.061	Tursiops_truncatus
ENSPCIG00000017680	PSPC1	67	97.429	ENSUAMG00000012309	PSPC1	99	97.429	Ursus_americanus
ENSPCIG00000017680	PSPC1	93	96.920	ENSUMAG00000013993	PSPC1	100	96.920	Ursus_maritimus
ENSPCIG00000017680	PSPC1	76	97.494	ENSVPAG00000010029	PSPC1	100	97.494	Vicugna_pacos
ENSPCIG00000017680	PSPC1	100	96.552	ENSVVUG00000006414	PSPC1	99	97.143	Vulpes_vulpes
ENSPCIG00000017680	PSPC1	69	71.274	ENSXCOG00000017438	pspc1	83	73.864	Xiphophorus_couchianus
ENSPCIG00000017680	PSPC1	69	71.545	ENSXMAG00000007929	pspc1	83	74.148	Xiphophorus_maculatus