EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPCIG00000022514 (Gene tree)
Gene ID: 110219455
Gene Symbol: SMARCAL1
Alias: -
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Phascolarctos_cinereus
Status: putative
Strand: Minus strand
Length: 84322 bases
Position: chrFUWB01000631.1:9063-93384
Accession: 11102
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCIP00000030259	ResIII	PF04851.15	4.8e-06	1	1
ENSPCIP00000030265	ResIII	PF04851.15	4.8e-06	1	1
ENSPCIP00000030248	ResIII	PF04851.15	4.9e-06	1	1
ENSPCIP00000030262	ResIII	PF04851.15	5e-06	1	1
ENSPCIP00000030255	ResIII	PF04851.15	5.5e-06	1	1
ENSPCIP00000030250	ResIII	PF04851.15	5.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCIT00000037243	SMARCAL1-204	3907	-	ENSPCIP00000030259	900 (aa)	-	-
ENSPCIT00000037246	SMARCAL1-205	5407	-	ENSPCIP00000030262	917 (aa)	-	-
ENSPCIT00000037249	SMARCAL1-206	3375	-	ENSPCIP00000030265	900 (aa)	-	-
ENSPCIT00000037233	SMARCAL1-202	3979	-	ENSPCIP00000030250	971 (aa)	-	-
ENSPCIT00000037230	SMARCAL1-201	3817	-	ENSPCIP00000030248	912 (aa)	-	-
ENSPCIT00000037239	SMARCAL1-203	3928	-	ENSPCIP00000030255	954 (aa)	-	-

Gene Model

Click here to download ENSPCIG00000022514's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCIG00000022514's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCIG00000022514	SMARCAL1	99	62.721	ENSG00000138375	SMARCAL1	99	75.000	Homo_sapiens
ENSPCIG00000022514	SMARCAL1	72	61.444	ENSAPOG00000020156	SMARCAL1	78	58.889	Acanthochromis_polyacanthus
ENSPCIG00000022514	SMARCAL1	72	64.462	ENSACIG00000001500	smarcal1	84	64.319	Amphilophus_citrinellus
ENSPCIG00000022514	SMARCAL1	72	62.404	ENSAOCG00000014266	SMARCAL1	76	61.606	Amphiprion_ocellaris
ENSPCIG00000022514	SMARCAL1	72	62.212	ENSAPEG00000015861	SMARCAL1	78	59.861	Amphiprion_percula
ENSPCIG00000022514	SMARCAL1	99	51.495	ENSATEG00000020624	SMARCAL1	99	50.667	Anabas_testudineus
ENSPCIG00000022514	SMARCAL1	99	55.459	ENSAPLG00000009864	SMARCAL1	99	54.500	Anas_platyrhynchos
ENSPCIG00000022514	SMARCAL1	99	54.060	ENSACAG00000004612	SMARCAL1	99	52.772	Anolis_carolinensis
ENSPCIG00000022514	SMARCAL1	73	62.006	ENSACLG00000015990	SMARCAL1	77	61.239	Astatotilapia_calliptera
ENSPCIG00000022514	SMARCAL1	95	55.062	ENSAMXG00000003350	smarcal1	99	54.087	Astyanax_mexicanus
ENSPCIG00000022514	SMARCAL1	98	72.183	ENSCPBG00000013599	SMARCAL1	100	68.692	Chrysemys_picta_bellii
ENSPCIG00000022514	SMARCAL1	70	48.357	ENSCING00000009308	-	100	48.357	Ciona_intestinalis
ENSPCIG00000022514	SMARCAL1	72	62.000	ENSCSEG00000010785	SMARCAL1	75	61.596	Cynoglossus_semilaevis
ENSPCIG00000022514	SMARCAL1	99	52.318	ENSCVAG00000018780	SMARCAL1	100	51.177	Cyprinodon_variegatus
ENSPCIG00000022514	SMARCAL1	58	51.803	ENSEBUG00000011906	SMARCAL1	73	51.803	Eptatretus_burgeri
ENSPCIG00000022514	SMARCAL1	99	48.351	ENSELUG00000010440	-	99	48.776	Esox_lucius
ENSPCIG00000022514	SMARCAL1	99	55.411	ENSFALG00000003981	SMARCAL1	99	54.454	Ficedula_albicollis
ENSPCIG00000022514	SMARCAL1	72	61.103	ENSFHEG00000008380	SMARCAL1	99	49.589	Fundulus_heteroclitus
ENSPCIG00000022514	SMARCAL1	56	61.972	ENSGMOG00000010034	smarcal1	90	59.598	Gadus_morhua
ENSPCIG00000022514	SMARCAL1	99	56.338	ENSGALG00000011475	RPL37A	99	55.791	Gallus_gallus
ENSPCIG00000022514	SMARCAL1	71	65.981	ENSGACG00000006073	SMARCAL1	99	65.981	Gasterosteus_aculeatus
ENSPCIG00000022514	SMARCAL1	99	58.542	ENSGAGG00000015660	SMARCAL1	99	58.542	Gopherus_agassizii
ENSPCIG00000022514	SMARCAL1	73	62.310	ENSHBUG00000002973	smarcal1	77	61.527	Haplochromis_burtoni
ENSPCIG00000022514	SMARCAL1	73	62.064	ENSHCOG00000017921	smarcal1	80	61.686	Hippocampus_comes
ENSPCIG00000022514	SMARCAL1	83	55.482	ENSKMAG00000012023	SMARCAL1	91	54.956	Kryptolebias_marmoratus
ENSPCIG00000022514	SMARCAL1	72	59.877	ENSLBEG00000022915	smarcal1	87	59.009	Labrus_bergylta
ENSPCIG00000022514	SMARCAL1	98	50.677	ENSLBEG00000003493	smarcal1	100	50.677	Labrus_bergylta
ENSPCIG00000022514	SMARCAL1	74	59.285	ENSLACG00000010974	SMARCAL1	99	50.354	Latimeria_chalumnae
ENSPCIG00000022514	SMARCAL1	72	65.895	ENSLOCG00000009637	smarcal1	77	66.308	Lepisosteus_oculatus
ENSPCIG00000022514	SMARCAL1	99	51.313	ENSMAMG00000000828	SMARCAL1	96	51.348	Mastacembelus_armatus
ENSPCIG00000022514	SMARCAL1	73	61.854	ENSMZEG00005007660	SMARCAL1	77	61.095	Maylandia_zebra
ENSPCIG00000022514	SMARCAL1	99	56.508	ENSMGAG00000011658	SMARCAL1	99	55.422	Meleagris_gallopavo
ENSPCIG00000022514	SMARCAL1	78	57.303	ENSMMOG00000003842	smarcal1	88	57.203	Mola_mola
ENSPCIG00000022514	SMARCAL1	100	78.834	ENSMODG00000015544	SMARCAL1	100	78.834	Monodelphis_domestica
ENSPCIG00000022514	SMARCAL1	72	61.846	ENSNBRG00000016273	smarcal1	84	61.846	Neolamprologus_brichardi
ENSPCIG00000022514	SMARCAL1	99	79.356	ENSMEUG00000004395	SMARCAL1	100	79.356	Notamacropus_eugenii
ENSPCIG00000022514	SMARCAL1	72	62.866	ENSONIG00000009036	smarcal1	100	62.044	Oreochromis_niloticus
ENSPCIG00000022514	SMARCAL1	99	51.106	ENSORLG00000016455	SMARCAL1	97	50.315	Oryzias_latipes
ENSPCIG00000022514	SMARCAL1	99	50.432	ENSORLG00020001610	SMARCAL1	95	52.055	Oryzias_latipes_hni
ENSPCIG00000022514	SMARCAL1	99	51.163	ENSORLG00015001865	SMARCAL1	97	50.315	Oryzias_latipes_hsok
ENSPCIG00000022514	SMARCAL1	99	61.187	ENSOMEG00000001845	smarcal1	96	59.456	Oryzias_melastigma
ENSPCIG00000022514	SMARCAL1	71	61.646	ENSPMGG00000019092	SMARCAL1	81	58.038	Periophthalmus_magnuspinnatus
ENSPCIG00000022514	SMARCAL1	72	62.538	ENSPFOG00000000560	SMARCAL1	78	61.351	Poecilia_formosa
ENSPCIG00000022514	SMARCAL1	72	62.538	ENSPMEG00000018146	SMARCAL1	78	61.351	Poecilia_mexicana
ENSPCIG00000022514	SMARCAL1	86	56.375	ENSPNAG00000014900	smarcal1	92	54.305	Pygocentrus_nattereri
ENSPCIG00000022514	SMARCAL1	99	73.539	ENSSHAG00000013538	SMARCAL1	100	72.979	Sarcophilus_harrisii
ENSPCIG00000022514	SMARCAL1	73	61.094	ENSSMAG00000010427	SMARCAL1	78	58.356	Scophthalmus_maximus
ENSPCIG00000022514	SMARCAL1	73	60.725	ENSSDUG00000017470	SMARCAL1	74	60.315	Seriola_dumerili
ENSPCIG00000022514	SMARCAL1	73	60.423	ENSSLDG00000007224	SMARCAL1	79	58.390	Seriola_lalandi_dorsalis
ENSPCIG00000022514	SMARCAL1	99	53.549	ENSSPUG00000015369	SMARCAL1	99	53.158	Sphenodon_punctatus
ENSPCIG00000022514	SMARCAL1	71	62.696	ENSSPAG00000003742	smarcal1	84	61.527	Stegastes_partitus
ENSPCIG00000022514	SMARCAL1	98	57.545	ENSSSCG00000035501	SMARCAL1	97	57.650	Sus_scrofa
ENSPCIG00000022514	SMARCAL1	72	67.957	ENSTGUG00000005079	SMARCAL1	100	67.254	Taeniopygia_guttata
ENSPCIG00000022514	SMARCAL1	76	56.369	ENSTRUG00000010701	SMARCAL1	84	55.220	Takifugu_rubripes
ENSPCIG00000022514	SMARCAL1	99	53.702	ENSTTRG00000009001	SMARCAL1	99	52.410	Tursiops_truncatus
ENSPCIG00000022514	SMARCAL1	99	55.736	ENSXETG00000000465	smarcal1	99	54.582	Xenopus_tropicalis