EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPCIG00000023469 (Gene tree)
Gene ID: 110202287
Gene Symbol: LSM6
Alias: -
Full Name: LSM6 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Phascolarctos_cinereus
Status: putative
Strand: Plus strand
Length: 19074 bases
Position: chrFUWB01001674.1:163398-182471
Accession: 17017
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCIP00000031579	LSM	PF01423.22	3.8e-19	1	1
ENSPCIP00000031578	LSM	PF01423.22	2.4e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCIT00000038833	LSM6-201	515	-	ENSPCIP00000031578	86 (aa)	-	-
ENSPCIT00000038834	LSM6-202	323	-	ENSPCIP00000031579	105 (aa)	-	-

Gene Model

Click here to download ENSPCIG00000023469's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCIG00000023469's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPCIG00000023469	LSM6	72	48.387	ENSPCIG00000020807	-	78	50.746
ENSPCIG00000023469	LSM6	72	48.387	ENSPCIG00000017205	-	78	50.746
ENSPCIG00000023469	LSM6	63	77.778	ENSPCIG00000023723	-	74	77.778

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCIG00000023469	LSM6	80	100.000	ENSG00000164167	LSM6	100	100.000	Homo_sapiens
ENSPCIG00000023469	LSM6	80	97.101	ENSAPOG00000019832	lsm6	100	95.000	Acanthochromis_polyacanthus
ENSPCIG00000023469	LSM6	80	100.000	ENSAMEG00000016671	LSM6	100	100.000	Ailuropoda_melanoleuca
ENSPCIG00000023469	LSM6	80	97.101	ENSACIG00000016711	lsm6	100	95.000	Amphilophus_citrinellus
ENSPCIG00000023469	LSM6	80	97.101	ENSAOCG00000002110	lsm6	52	95.000	Amphiprion_ocellaris
ENSPCIG00000023469	LSM6	80	97.101	ENSAPEG00000023992	lsm6	100	95.000	Amphiprion_percula
ENSPCIG00000023469	LSM6	80	97.101	ENSATEG00000012610	lsm6	100	95.000	Anabas_testudineus
ENSPCIG00000023469	LSM6	77	100.000	ENSAPLG00000012594	LSM6	99	100.000	Anas_platyrhynchos
ENSPCIG00000023469	LSM6	80	100.000	ENSACAG00000004004	LSM6	100	100.000	Anolis_carolinensis
ENSPCIG00000023469	LSM6	76	90.769	ENSANAG00000021839	-	100	86.250	Aotus_nancymaae
ENSPCIG00000023469	LSM6	80	100.000	ENSANAG00000030568	-	100	100.000	Aotus_nancymaae
ENSPCIG00000023469	LSM6	80	97.101	ENSACLG00000025621	lsm6	100	95.000	Astatotilapia_calliptera
ENSPCIG00000023469	LSM6	87	90.110	ENSAMXG00000038738	lsm6	100	96.250	Astyanax_mexicanus
ENSPCIG00000023469	LSM6	80	100.000	ENSBTAG00000014060	LSM6	100	100.000	Bos_taurus
ENSPCIG00000023469	LSM6	80	92.754	ENSBTAG00000052085	-	100	93.750	Bos_taurus
ENSPCIG00000023469	LSM6	77	83.333	WBGene00003080	lsm-6	97	81.333	Caenorhabditis_elegans
ENSPCIG00000023469	LSM6	80	100.000	ENSCJAG00000002482	LSM6	100	100.000	Callithrix_jacchus
ENSPCIG00000023469	LSM6	80	100.000	ENSCAFG00000007738	LSM6	100	100.000	Canis_familiaris
ENSPCIG00000023469	LSM6	80	100.000	ENSCAFG00020025902	LSM6	100	100.000	Canis_lupus_dingo
ENSPCIG00000023469	LSM6	80	100.000	ENSCHIG00000010334	-	100	100.000	Capra_hircus
ENSPCIG00000023469	LSM6	80	81.159	ENSCHIG00000024198	-	99	81.928	Capra_hircus
ENSPCIG00000023469	LSM6	80	100.000	ENSCHIG00000012864	-	100	100.000	Capra_hircus
ENSPCIG00000023469	LSM6	80	100.000	ENSTSYG00000026972	LSM6	100	100.000	Carlito_syrichta
ENSPCIG00000023469	LSM6	74	92.188	ENSTSYG00000012759	-	84	92.188	Carlito_syrichta
ENSPCIG00000023469	LSM6	76	96.923	ENSCAPG00000011179	-	100	96.923	Cavia_aperea
ENSPCIG00000023469	LSM6	80	100.000	ENSCAPG00000008104	LSM6	100	100.000	Cavia_aperea
ENSPCIG00000023469	LSM6	80	100.000	ENSCPOG00000032655	LSM6	100	100.000	Cavia_porcellus
ENSPCIG00000023469	LSM6	80	98.551	ENSCCAG00000020665	-	99	98.734	Cebus_capucinus
ENSPCIG00000023469	LSM6	80	100.000	ENSCCAG00000036437	LSM6	100	100.000	Cebus_capucinus
ENSPCIG00000023469	LSM6	71	83.607	ENSCATG00000038799	-	100	72.500	Cercocebus_atys
ENSPCIG00000023469	LSM6	80	100.000	ENSCATG00000002770	-	100	100.000	Cercocebus_atys
ENSPCIG00000023469	LSM6	80	100.000	ENSCLAG00000005495	LSM6	100	100.000	Chinchilla_lanigera
ENSPCIG00000023469	LSM6	80	79.710	ENSCLAG00000005685	-	100	80.282	Chinchilla_lanigera
ENSPCIG00000023469	LSM6	80	100.000	ENSCSAG00000003421	LSM6	100	100.000	Chlorocebus_sabaeus
ENSPCIG00000023469	LSM6	62	100.000	ENSCHOG00000003420	LSM6	84	100.000	Choloepus_hoffmanni
ENSPCIG00000023469	LSM6	80	100.000	ENSCPBG00000027472	LSM6	88	97.619	Chrysemys_picta_bellii
ENSPCIG00000023469	LSM6	77	98.485	ENSCING00000019152	-	93	96.053	Ciona_intestinalis
ENSPCIG00000023469	LSM6	77	100.000	ENSCSAVG00000002065	-	93	97.368	Ciona_savignyi
ENSPCIG00000023469	LSM6	80	100.000	ENSCANG00000006849	-	100	100.000	Colobus_angolensis_palliatus
ENSPCIG00000023469	LSM6	80	100.000	ENSCANG00000041263	-	100	100.000	Colobus_angolensis_palliatus
ENSPCIG00000023469	LSM6	71	81.967	ENSCANG00000035214	-	100	71.250	Colobus_angolensis_palliatus
ENSPCIG00000023469	LSM6	80	100.000	ENSCGRG00001017142	Lsm6	100	100.000	Cricetulus_griseus_chok1gshd
ENSPCIG00000023469	LSM6	80	100.000	ENSCGRG00000008320	Lsm6	100	100.000	Cricetulus_griseus_crigri
ENSPCIG00000023469	LSM6	80	97.101	ENSCSEG00000000423	lsm6	100	95.000	Cynoglossus_semilaevis
ENSPCIG00000023469	LSM6	80	97.101	ENSCVAG00000001592	lsm6	100	95.000	Cyprinodon_variegatus
ENSPCIG00000023469	LSM6	80	97.101	ENSDARG00000036995	lsm6	100	96.250	Danio_rerio
ENSPCIG00000023469	LSM6	86	97.297	ENSDNOG00000040186	-	80	97.297	Dasypus_novemcinctus
ENSPCIG00000023469	LSM6	80	98.551	ENSDNOG00000044848	-	100	98.750	Dasypus_novemcinctus
ENSPCIG00000023469	LSM6	80	100.000	ENSDORG00000000933	Lsm6	100	100.000	Dipodomys_ordii
ENSPCIG00000023469	LSM6	77	84.848	FBgn0034564	CG9344	97	85.714	Drosophila_melanogaster
ENSPCIG00000023469	LSM6	80	100.000	ENSEBUG00000017073	lsm6	100	98.750	Eptatretus_burgeri
ENSPCIG00000023469	LSM6	98	89.286	ENSEASG00005001533	LSM6	86	89.286	Equus_asinus_asinus
ENSPCIG00000023469	LSM6	80	100.000	ENSECAG00000021036	LSM6	100	100.000	Equus_caballus
ENSPCIG00000023469	LSM6	75	72.152	ENSEEUG00000002101	LSM6	100	72.152	Erinaceus_europaeus
ENSPCIG00000023469	LSM6	80	97.101	ENSELUG00000014301	LSM6	100	96.250	Esox_lucius
ENSPCIG00000023469	LSM6	80	100.000	ENSFCAG00000003047	LSM6	100	100.000	Felis_catus
ENSPCIG00000023469	LSM6	80	100.000	ENSFALG00000005509	LSM6	100	94.253	Ficedula_albicollis
ENSPCIG00000023469	LSM6	80	88.406	ENSFDAG00000019073	-	100	87.500	Fukomys_damarensis
ENSPCIG00000023469	LSM6	80	100.000	ENSFDAG00000020913	-	100	100.000	Fukomys_damarensis
ENSPCIG00000023469	LSM6	81	97.143	ENSFHEG00000007948	lsm6	100	95.000	Fundulus_heteroclitus
ENSPCIG00000023469	LSM6	80	97.101	ENSGMOG00000015550	lsm6	100	95.000	Gadus_morhua
ENSPCIG00000023469	LSM6	80	100.000	ENSGALG00000009985	LSM6	100	100.000	Gallus_gallus
ENSPCIG00000023469	LSM6	80	97.101	ENSGAFG00000017763	lsm6	100	95.000	Gambusia_affinis
ENSPCIG00000023469	LSM6	80	97.101	ENSGACG00000017223	lsm6	99	96.203	Gasterosteus_aculeatus
ENSPCIG00000023469	LSM6	80	100.000	ENSGAGG00000020980	LSM6	100	100.000	Gopherus_agassizii
ENSPCIG00000023469	LSM6	80	100.000	ENSGGOG00000001310	LSM6	100	100.000	Gorilla_gorilla
ENSPCIG00000023469	LSM6	80	97.101	ENSHBUG00000008618	lsm6	100	95.000	Haplochromis_burtoni
ENSPCIG00000023469	LSM6	80	100.000	ENSHGLG00000000205	LSM6	100	100.000	Heterocephalus_glaber_female
ENSPCIG00000023469	LSM6	80	100.000	ENSHGLG00100014341	LSM6	100	100.000	Heterocephalus_glaber_male
ENSPCIG00000023469	LSM6	80	97.101	ENSHCOG00000005591	lsm6	100	95.000	Hippocampus_comes
ENSPCIG00000023469	LSM6	80	95.652	ENSIPUG00000004508	lsm6	100	95.000	Ictalurus_punctatus
ENSPCIG00000023469	LSM6	80	100.000	ENSSTOG00000002678	LSM6	100	100.000	Ictidomys_tridecemlineatus
ENSPCIG00000023469	LSM6	77	75.758	ENSJJAG00000016942	-	97	79.221	Jaculus_jaculus
ENSPCIG00000023469	LSM6	80	89.855	ENSJJAG00000011211	-	100	90.000	Jaculus_jaculus
ENSPCIG00000023469	LSM6	80	100.000	ENSJJAG00000013845	-	100	100.000	Jaculus_jaculus
ENSPCIG00000023469	LSM6	80	97.101	ENSKMAG00000004105	lsm6	100	95.000	Kryptolebias_marmoratus
ENSPCIG00000023469	LSM6	80	97.101	ENSLBEG00000018441	lsm6	100	95.000	Labrus_bergylta
ENSPCIG00000023469	LSM6	80	100.000	ENSLACG00000006937	LSM6	100	100.000	Latimeria_chalumnae
ENSPCIG00000023469	LSM6	80	97.101	ENSLOCG00000008852	lsm6	100	96.250	Lepisosteus_oculatus
ENSPCIG00000023469	LSM6	80	95.652	ENSLOCG00000017683	-	100	95.000	Lepisosteus_oculatus
ENSPCIG00000023469	LSM6	80	100.000	ENSLAFG00000001952	LSM6	100	100.000	Loxodonta_africana
ENSPCIG00000023469	LSM6	80	100.000	ENSMFAG00000033073	LSM6	100	100.000	Macaca_fascicularis
ENSPCIG00000023469	LSM6	71	85.246	ENSMNEG00000040412	-	100	73.750	Macaca_nemestrina
ENSPCIG00000023469	LSM6	80	100.000	ENSMNEG00000034820	-	100	100.000	Macaca_nemestrina
ENSPCIG00000023469	LSM6	80	100.000	ENSMLEG00000035153	LSM6	100	100.000	Mandrillus_leucophaeus
ENSPCIG00000023469	LSM6	80	97.101	ENSMAMG00000014029	lsm6	100	95.000	Mastacembelus_armatus
ENSPCIG00000023469	LSM6	80	97.101	ENSMZEG00005009146	lsm6	100	95.000	Maylandia_zebra
ENSPCIG00000023469	LSM6	80	100.000	ENSMGAG00000003802	LSM6	100	100.000	Meleagris_gallopavo
ENSPCIG00000023469	LSM6	80	100.000	ENSMAUG00000014938	Lsm6	100	100.000	Mesocricetus_auratus
ENSPCIG00000023469	LSM6	80	100.000	ENSMICG00000042599	LSM6	100	100.000	Microcebus_murinus
ENSPCIG00000023469	LSM6	80	98.551	ENSMICG00000047411	-	92	91.026	Microcebus_murinus
ENSPCIG00000023469	LSM6	80	100.000	ENSMOCG00000020049	Lsm6	100	100.000	Microtus_ochrogaster
ENSPCIG00000023469	LSM6	87	89.333	ENSMMOG00000007379	-	100	88.750	Mola_mola
ENSPCIG00000023469	LSM6	80	97.101	ENSMMOG00000005470	lsm6	100	95.000	Mola_mola
ENSPCIG00000023469	LSM6	80	100.000	ENSMODG00000000526	LSM6	100	100.000	Monodelphis_domestica
ENSPCIG00000023469	LSM6	80	97.101	ENSMALG00000002419	lsm6	100	95.000	Monopterus_albus
ENSPCIG00000023469	LSM6	80	100.000	MGP_CAROLIEiJ_G0031245	Lsm6	100	100.000	Mus_caroli
ENSPCIG00000023469	LSM6	80	100.000	ENSMUSG00000031683	Lsm6	100	100.000	Mus_musculus
ENSPCIG00000023469	LSM6	80	100.000	MGP_PahariEiJ_G0022851	Lsm6	100	100.000	Mus_pahari
ENSPCIG00000023469	LSM6	80	100.000	MGP_SPRETEiJ_G0032365	Lsm6	100	100.000	Mus_spretus
ENSPCIG00000023469	LSM6	80	100.000	ENSMPUG00000006936	LSM6	97	97.590	Mustela_putorius_furo
ENSPCIG00000023469	LSM6	80	100.000	ENSMLUG00000026355	LSM6	100	100.000	Myotis_lucifugus
ENSPCIG00000023469	LSM6	80	100.000	ENSNGAG00000019116	Lsm6	100	100.000	Nannospalax_galili
ENSPCIG00000023469	LSM6	91	88.462	ENSNBRG00000004887	lsm6	100	95.000	Neolamprologus_brichardi
ENSPCIG00000023469	LSM6	80	100.000	ENSNLEG00000005584	LSM6	100	100.000	Nomascus_leucogenys
ENSPCIG00000023469	LSM6	80	100.000	ENSOPRG00000011199	LSM6	100	98.750	Ochotona_princeps
ENSPCIG00000023469	LSM6	80	98.551	ENSODEG00000002307	-	100	98.750	Octodon_degus
ENSPCIG00000023469	LSM6	80	97.101	ENSODEG00000020420	-	100	97.500	Octodon_degus
ENSPCIG00000023469	LSM6	80	98.551	ENSODEG00000019419	-	100	96.250	Octodon_degus
ENSPCIG00000023469	LSM6	80	88.406	ENSODEG00000018684	-	100	88.312	Octodon_degus
ENSPCIG00000023469	LSM6	80	97.101	ENSONIG00000010005	lsm6	100	95.000	Oreochromis_niloticus
ENSPCIG00000023469	LSM6	74	74.359	ENSOANG00000006895	-	100	74.359	Ornithorhynchus_anatinus
ENSPCIG00000023469	LSM6	74	74.359	ENSOANG00000006894	-	100	74.359	Ornithorhynchus_anatinus
ENSPCIG00000023469	LSM6	80	100.000	ENSOCUG00000017495	-	56	86.139	Oryctolagus_cuniculus
ENSPCIG00000023469	LSM6	80	95.652	ENSORLG00000024158	lsm6	100	93.750	Oryzias_latipes
ENSPCIG00000023469	LSM6	85	93.151	ENSORLG00020017383	lsm6	100	93.750	Oryzias_latipes_hni
ENSPCIG00000023469	LSM6	80	95.652	ENSORLG00015016903	lsm6	100	93.750	Oryzias_latipes_hsok
ENSPCIG00000023469	LSM6	80	97.101	ENSOMEG00000000074	lsm6	100	95.000	Oryzias_melastigma
ENSPCIG00000023469	LSM6	80	100.000	ENSOGAG00000026665	-	100	100.000	Otolemur_garnettii
ENSPCIG00000023469	LSM6	80	100.000	ENSOGAG00000033153	-	100	100.000	Otolemur_garnettii
ENSPCIG00000023469	LSM6	83	100.000	ENSOARG00000008509	-	91	100.000	Ovis_aries
ENSPCIG00000023469	LSM6	80	92.754	ENSOARG00000011641	-	95	91.463	Ovis_aries
ENSPCIG00000023469	LSM6	80	100.000	ENSPPAG00000037929	LSM6	100	100.000	Pan_paniscus
ENSPCIG00000023469	LSM6	80	100.000	ENSPPRG00000012806	LSM6	100	100.000	Panthera_pardus
ENSPCIG00000023469	LSM6	80	100.000	ENSPTIG00000019769	LSM6	100	100.000	Panthera_tigris_altaica
ENSPCIG00000023469	LSM6	80	100.000	ENSPTRG00000016488	LSM6	100	100.000	Pan_troglodytes
ENSPCIG00000023469	LSM6	80	100.000	ENSPANG00000006552	LSM6	100	100.000	Papio_anubis
ENSPCIG00000023469	LSM6	80	97.101	ENSPKIG00000016176	lsm6	100	96.250	Paramormyrops_kingsleyae
ENSPCIG00000023469	LSM6	80	100.000	ENSPSIG00000016942	LSM6	100	100.000	Pelodiscus_sinensis
ENSPCIG00000023469	LSM6	80	97.101	ENSPMGG00000018004	lsm6	100	95.000	Periophthalmus_magnuspinnatus
ENSPCIG00000023469	LSM6	80	100.000	ENSPEMG00000012410	Lsm6	100	100.000	Peromyscus_maniculatus_bairdii
ENSPCIG00000023469	LSM6	80	100.000	ENSPMAG00000006949	lsm6	100	98.750	Petromyzon_marinus
ENSPCIG00000023469	LSM6	80	97.101	ENSPFOG00000008881	lsm6	100	95.000	Poecilia_formosa
ENSPCIG00000023469	LSM6	80	97.101	ENSPLAG00000003202	lsm6	100	95.000	Poecilia_latipinna
ENSPCIG00000023469	LSM6	80	97.101	ENSPMEG00000004000	lsm6	100	95.000	Poecilia_mexicana
ENSPCIG00000023469	LSM6	80	97.101	ENSPREG00000023235	lsm6	100	95.000	Poecilia_reticulata
ENSPCIG00000023469	LSM6	80	100.000	ENSPPYG00000015105	LSM6	100	100.000	Pongo_abelii
ENSPCIG00000023469	LSM6	80	100.000	ENSPCOG00000013899	LSM6	100	100.000	Propithecus_coquereli
ENSPCIG00000023469	LSM6	91	88.462	ENSPNYG00000012614	lsm6	100	95.000	Pundamilia_nyererei
ENSPCIG00000023469	LSM6	80	97.101	ENSPNAG00000018779	lsm6	100	96.250	Pygocentrus_nattereri
ENSPCIG00000023469	LSM6	80	100.000	ENSRNOG00000030374	Lsm6	100	100.000	Rattus_norvegicus
ENSPCIG00000023469	LSM6	80	100.000	ENSRNOG00000049370	LOC100360750	100	100.000	Rattus_norvegicus
ENSPCIG00000023469	LSM6	80	100.000	ENSRBIG00000027878	LSM6	100	100.000	Rhinopithecus_bieti
ENSPCIG00000023469	LSM6	80	100.000	ENSRROG00000024868	LSM6	100	100.000	Rhinopithecus_roxellana
ENSPCIG00000023469	LSM6	79	37.500	YDR378C	-	93	45.000	Saccharomyces_cerevisiae
ENSPCIG00000023469	LSM6	80	100.000	ENSSBOG00000021229	-	100	100.000	Saimiri_boliviensis_boliviensis
ENSPCIG00000023469	LSM6	80	71.014	ENSSBOG00000028103	-	100	73.750	Saimiri_boliviensis_boliviensis
ENSPCIG00000023469	LSM6	80	97.101	ENSSFOG00015016480	lsm6	100	96.250	Scleropages_formosus
ENSPCIG00000023469	LSM6	80	97.101	ENSSMAG00000004550	lsm6	100	95.000	Scophthalmus_maximus
ENSPCIG00000023469	LSM6	80	97.101	ENSSDUG00000020459	lsm6	55	89.773	Seriola_dumerili
ENSPCIG00000023469	LSM6	80	97.101	ENSSLDG00000020533	lsm6	92	88.636	Seriola_lalandi_dorsalis
ENSPCIG00000023469	LSM6	85	93.151	ENSSLDG00000004136	-	63	93.151	Seriola_lalandi_dorsalis
ENSPCIG00000023469	LSM6	80	100.000	ENSSPUG00000008657	LSM6	100	100.000	Sphenodon_punctatus
ENSPCIG00000023469	LSM6	80	97.101	ENSSPAG00000003246	lsm6	100	95.000	Stegastes_partitus
ENSPCIG00000023469	LSM6	80	100.000	ENSSSCG00000035973	LSM6	100	100.000	Sus_scrofa
ENSPCIG00000023469	LSM6	80	100.000	ENSTGUG00000002663	LSM6	100	100.000	Taeniopygia_guttata
ENSPCIG00000023469	LSM6	80	97.101	ENSTRUG00000023398	lsm6	100	95.000	Takifugu_rubripes
ENSPCIG00000023469	LSM6	80	97.101	ENSTNIG00000017725	lsm6	100	95.000	Tetraodon_nigroviridis
ENSPCIG00000023469	LSM6	80	100.000	ENSTTRG00000004609	LSM6	100	100.000	Tursiops_truncatus
ENSPCIG00000023469	LSM6	85	98.630	ENSUAMG00000014213	LSM6	60	98.630	Ursus_americanus
ENSPCIG00000023469	LSM6	85	98.630	ENSUMAG00000015727	LSM6	60	98.630	Ursus_maritimus
ENSPCIG00000023469	LSM6	80	100.000	ENSVPAG00000006922	LSM6	100	100.000	Vicugna_pacos
ENSPCIG00000023469	LSM6	80	100.000	ENSVVUG00000009254	LSM6	74	96.512	Vulpes_vulpes
ENSPCIG00000023469	LSM6	80	100.000	ENSXETG00000023683	lsm6	100	100.000	Xenopus_tropicalis
ENSPCIG00000023469	LSM6	86	91.892	ENSXMAG00000009606	lsm6	100	95.000	Xiphophorus_maculatus