EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPCIG00000023973 (Gene tree)
Gene ID: 110213875
Gene Symbol: APOBEC1
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Phascolarctos_cinereus
Status: putative
Strand: Plus strand
Length: 9636 bases
Position: chrFUWB01000956.1:1160320-1169955
Accession: 110213875
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCIP00000032289	APOBEC_N	PF08210.11	8.6e-30	1	1
ENSPCIP00000032289	APOBEC_C	PF05240.14	5.5e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCIT00000039713	APOBEC1-201	1196	-	ENSPCIP00000032289	236 (aa)	XP_020850070	UPI000A283C7D

Gene Model

Click here to download ENSPCIG00000023973's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCIG00000023973's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPCIG00000023973	APOBEC1	61	31.126	ENSPCIG00000027633	-	58	31.126
ENSPCIG00000023973	APOBEC1	53	36.567	ENSPCIG00000023974	AICDA	66	36.567

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCIG00000023973	APOBEC1	100	69.068	ENSG00000111701	APOBEC1	100	69.068	Homo_sapiens
ENSPCIG00000023973	APOBEC1	98	69.264	ENSAMEG00000007098	APOBEC1	98	69.264	Ailuropoda_melanoleuca
ENSPCIG00000023973	APOBEC1	72	39.181	ENSACAG00000028578	-	93	39.181	Anolis_carolinensis
ENSPCIG00000023973	APOBEC1	100	68.644	ENSANAG00000027743	APOBEC1	95	68.644	Aotus_nancymaae
ENSPCIG00000023973	APOBEC1	100	62.288	ENSBTAG00000014683	APOBEC1	100	62.288	Bos_taurus
ENSPCIG00000023973	APOBEC1	94	69.683	ENSCJAG00000005398	APOBEC1	100	69.683	Callithrix_jacchus
ENSPCIG00000023973	APOBEC1	100	69.492	ENSCAFG00000013901	APOBEC1	100	69.492	Canis_familiaris
ENSPCIG00000023973	APOBEC1	96	67.257	ENSCAFG00020003511	APOBEC1	95	67.257	Canis_lupus_dingo
ENSPCIG00000023973	APOBEC1	98	61.472	ENSCHIG00000011898	APOBEC1	96	61.472	Capra_hircus
ENSPCIG00000023973	APOBEC1	60	73.050	ENSTSYG00000029141	APOBEC1	100	73.050	Carlito_syrichta
ENSPCIG00000023973	APOBEC1	91	62.617	ENSCAPG00000015882	-	99	62.617	Cavia_aperea
ENSPCIG00000023973	APOBEC1	99	61.277	ENSCPOG00000033068	APOBEC1	99	61.277	Cavia_porcellus
ENSPCIG00000023973	APOBEC1	100	67.797	ENSCCAG00000022258	APOBEC1	100	67.797	Cebus_capucinus
ENSPCIG00000023973	APOBEC1	100	69.068	ENSCATG00000021613	APOBEC1	95	69.068	Cercocebus_atys
ENSPCIG00000023973	APOBEC1	97	62.882	ENSCLAG00000014645	APOBEC1	99	62.882	Chinchilla_lanigera
ENSPCIG00000023973	APOBEC1	81	67.895	ENSCSAG00000009817	APOBEC1	99	67.895	Chlorocebus_sabaeus
ENSPCIG00000023973	APOBEC1	78	45.989	ENSCPBG00000014331	-	77	45.989	Chrysemys_picta_bellii
ENSPCIG00000023973	APOBEC1	78	48.663	ENSCPBG00000014335	-	76	48.663	Chrysemys_picta_bellii
ENSPCIG00000023973	APOBEC1	77	42.781	ENSCPBG00000017398	-	82	42.781	Chrysemys_picta_bellii
ENSPCIG00000023973	APOBEC1	88	45.116	ENSCPBG00000014328	-	94	45.116	Chrysemys_picta_bellii
ENSPCIG00000023973	APOBEC1	89	42.925	ENSCPBG00000014327	-	84	40.376	Chrysemys_picta_bellii
ENSPCIG00000023973	APOBEC1	83	50.510	ENSCPBG00000014329	-	54	50.510	Chrysemys_picta_bellii
ENSPCIG00000023973	APOBEC1	97	69.130	ENSCANG00000038359	APOBEC1	100	69.130	Colobus_angolensis_palliatus
ENSPCIG00000023973	APOBEC1	97	64.629	ENSCGRG00001011130	Apobec1	100	64.629	Cricetulus_griseus_chok1gshd
ENSPCIG00000023973	APOBEC1	97	64.629	ENSCGRG00000008644	Apobec1	100	64.629	Cricetulus_griseus_crigri
ENSPCIG00000023973	APOBEC1	100	69.492	ENSDNOG00000010926	APOBEC1	100	69.492	Dasypus_novemcinctus
ENSPCIG00000023973	APOBEC1	90	58.411	ENSDORG00000023717	Apobec1	100	58.411	Dipodomys_ordii
ENSPCIG00000023973	APOBEC1	99	68.803	ENSETEG00000004867	APOBEC1	99	68.803	Echinops_telfairi
ENSPCIG00000023973	APOBEC1	98	70.996	ENSEASG00005015951	APOBEC1	97	70.996	Equus_asinus_asinus
ENSPCIG00000023973	APOBEC1	81	68.947	ENSECAG00000017163	APOBEC1	99	68.947	Equus_caballus
ENSPCIG00000023973	APOBEC1	87	47.317	ENSEEUG00000007530	-	98	47.317	Erinaceus_europaeus
ENSPCIG00000023973	APOBEC1	92	57.798	ENSEEUG00000009112	-	97	57.798	Erinaceus_europaeus
ENSPCIG00000023973	APOBEC1	100	72.034	ENSFCAG00000009350	APOBEC1	100	72.034	Felis_catus
ENSPCIG00000023973	APOBEC1	60	45.775	ENSFALG00000007257	-	70	45.775	Ficedula_albicollis
ENSPCIG00000023973	APOBEC1	88	53.140	ENSFDAG00000018470	APOBEC1	99	53.140	Fukomys_damarensis
ENSPCIG00000023973	APOBEC1	76	41.530	ENSGAGG00000021745	-	68	40.984	Gopherus_agassizii
ENSPCIG00000023973	APOBEC1	72	45.614	ENSGAGG00000006624	-	62	45.614	Gopherus_agassizii
ENSPCIG00000023973	APOBEC1	85	41.089	ENSGAGG00000021744	-	79	41.089	Gopherus_agassizii
ENSPCIG00000023973	APOBEC1	68	51.852	ENSGAGG00000004947	-	85	51.064	Gopherus_agassizii
ENSPCIG00000023973	APOBEC1	89	49.057	ENSGAGG00000011837	-	88	51.479	Gopherus_agassizii
ENSPCIG00000023973	APOBEC1	99	59.149	ENSHGLG00000001495	APOBEC1	99	59.149	Heterocephalus_glaber_female
ENSPCIG00000023973	APOBEC1	99	58.298	ENSHGLG00100002187	APOBEC1	99	58.298	Heterocephalus_glaber_male
ENSPCIG00000023973	APOBEC1	91	55.349	ENSSTOG00000021971	APOBEC1	100	77.551	Ictidomys_tridecemlineatus
ENSPCIG00000023973	APOBEC1	97	64.629	ENSJJAG00000022108	Apobec1	100	64.629	Jaculus_jaculus
ENSPCIG00000023973	APOBEC1	94	71.749	ENSLAFG00000030837	APOBEC1	100	71.749	Loxodonta_africana
ENSPCIG00000023973	APOBEC1	100	69.068	ENSMFAG00000000277	APOBEC1	100	69.068	Macaca_fascicularis
ENSPCIG00000023973	APOBEC1	100	68.644	ENSMNEG00000029670	APOBEC1	100	68.644	Macaca_nemestrina
ENSPCIG00000023973	APOBEC1	100	69.068	ENSMLEG00000036301	APOBEC1	100	69.068	Mandrillus_leucophaeus
ENSPCIG00000023973	APOBEC1	92	66.667	ENSMAUG00000022167	Apobec1	97	66.667	Mesocricetus_auratus
ENSPCIG00000023973	APOBEC1	100	67.797	ENSMICG00000043645	APOBEC1	100	67.797	Microcebus_murinus
ENSPCIG00000023973	APOBEC1	100	83.898	ENSMODG00000018004	APOBEC1	100	83.898	Monodelphis_domestica
ENSPCIG00000023973	APOBEC1	97	64.912	ENSMUSG00000040613	Apobec1	99	66.071	Mus_musculus
ENSPCIG00000023973	APOBEC1	97	64.035	MGP_PahariEiJ_G0022580	-	99	65.179	Mus_pahari
ENSPCIG00000023973	APOBEC1	97	64.912	MGP_SPRETEiJ_G0029857	Apobec1	99	66.071	Mus_spretus
ENSPCIG00000023973	APOBEC1	100	68.220	ENSMPUG00000017532	APOBEC1	100	68.220	Mustela_putorius_furo
ENSPCIG00000023973	APOBEC1	97	64.192	ENSNGAG00000022607	Apobec1	100	64.192	Nannospalax_galili
ENSPCIG00000023973	APOBEC1	100	68.644	ENSNLEG00000005342	APOBEC1	100	68.644	Nomascus_leucogenys
ENSPCIG00000023973	APOBEC1	100	87.288	ENSMEUG00000013406	APOBEC1	100	87.288	Notamacropus_eugenii
ENSPCIG00000023973	APOBEC1	77	58.011	ENSOPRG00000009508	-	100	58.011	Ochotona_princeps
ENSPCIG00000023973	APOBEC1	100	66.102	ENSOCUG00000025736	APOBEC1	88	66.102	Oryctolagus_cuniculus
ENSPCIG00000023973	APOBEC1	98	69.697	ENSOGAG00000026415	APOBEC1	98	69.697	Otolemur_garnettii
ENSPCIG00000023973	APOBEC1	100	61.864	ENSOARG00000002072	APOBEC1	99	61.864	Ovis_aries
ENSPCIG00000023973	APOBEC1	99	65.236	ENSPPAG00000027657	APOBEC1	99	65.236	Pan_paniscus
ENSPCIG00000023973	APOBEC1	100	71.610	ENSPPRG00000012182	APOBEC1	100	71.610	Panthera_pardus
ENSPCIG00000023973	APOBEC1	100	71.610	ENSPTIG00000020280	APOBEC1	100	71.610	Panthera_tigris_altaica
ENSPCIG00000023973	APOBEC1	100	70.339	ENSPTRG00000004614	APOBEC1	100	70.339	Pan_troglodytes
ENSPCIG00000023973	APOBEC1	100	69.068	ENSPANG00000021027	APOBEC1	100	69.068	Papio_anubis
ENSPCIG00000023973	APOBEC1	53	47.500	ENSPSIG00000012791	-	71	47.500	Pelodiscus_sinensis
ENSPCIG00000023973	APOBEC1	78	42.473	ENSPSIG00000012568	-	81	42.473	Pelodiscus_sinensis
ENSPCIG00000023973	APOBEC1	97	63.319	ENSPEMG00000023841	Apobec1	100	63.319	Peromyscus_maniculatus_bairdii
ENSPCIG00000023973	APOBEC1	100	69.068	ENSPPYG00000004228	APOBEC1	95	69.068	Pongo_abelii
ENSPCIG00000023973	APOBEC1	79	71.658	ENSPCAG00000008733	APOBEC1	100	71.658	Procavia_capensis
ENSPCIG00000023973	APOBEC1	94	67.568	ENSPCOG00000013957	APOBEC1	98	67.568	Propithecus_coquereli
ENSPCIG00000023973	APOBEC1	100	56.780	ENSPVAG00000010709	APOBEC1	100	56.780	Pteropus_vampyrus
ENSPCIG00000023973	APOBEC1	97	63.596	ENSRNOG00000015411	Apobec1	99	63.596	Rattus_norvegicus
ENSPCIG00000023973	APOBEC1	100	68.644	ENSRBIG00000031161	APOBEC1	100	68.644	Rhinopithecus_bieti
ENSPCIG00000023973	APOBEC1	100	68.644	ENSRROG00000033576	APOBEC1	100	68.644	Rhinopithecus_roxellana
ENSPCIG00000023973	APOBEC1	73	72.254	ENSSBOG00000030587	APOBEC1	98	72.254	Saimiri_boliviensis_boliviensis
ENSPCIG00000023973	APOBEC1	97	91.667	ENSSHAG00000008925	APOBEC1	100	91.667	Sarcophilus_harrisii
ENSPCIG00000023973	APOBEC1	55	65.116	ENSSARG00000011972	-	98	65.116	Sorex_araneus
ENSPCIG00000023973	APOBEC1	73	59.884	ENSSARG00000000032	-	100	59.884	Sorex_araneus
ENSPCIG00000023973	APOBEC1	90	42.326	ENSSPUG00000009044	-	82	42.326	Sphenodon_punctatus
ENSPCIG00000023973	APOBEC1	100	65.678	ENSSSCG00000000668	APOBEC1	100	65.678	Sus_scrofa
ENSPCIG00000023973	APOBEC1	61	47.222	ENSTGUG00000013118	-	99	47.222	Taeniopygia_guttata
ENSPCIG00000023973	APOBEC1	94	64.706	ENSTBEG00000010043	APOBEC1	94	64.706	Tupaia_belangeri
ENSPCIG00000023973	APOBEC1	79	66.310	ENSTTRG00000014015	APOBEC1	100	66.310	Tursiops_truncatus
ENSPCIG00000023973	APOBEC1	98	69.264	ENSUAMG00000011636	APOBEC1	95	69.264	Ursus_americanus
ENSPCIG00000023973	APOBEC1	98	69.264	ENSUMAG00000016552	APOBEC1	95	69.264	Ursus_maritimus
ENSPCIG00000023973	APOBEC1	100	63.983	ENSVPAG00000001343	APOBEC1	100	63.983	Vicugna_pacos
ENSPCIG00000023973	APOBEC1	100	69.068	ENSVVUG00000010522	APOBEC1	100	69.068	Vulpes_vulpes