EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPCIG00000028735 (Gene tree)
Gene ID: -
Gene Symbol: XRN1
Alias: -
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Phascolarctos_cinereus
Status: putative
Strand: Plus strand
Length: 93545 bases
Position: chrFUWB01000330.1:167184-260728
Accession: 30654
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCIP00000039778	XRN_N	PF03159.18	1.1e-94	1	1
ENSPCIP00000039777	XRN_N	PF03159.18	1.5e-94	1	1
ENSPCIP00000039775	XRN_N	PF03159.18	2.3e-94	1	1
ENSPCIP00000039776	XRN_N	PF03159.18	2.5e-94	1	1
ENSPCIP00000039770	XRN_N	PF03159.18	2.7e-94	1	1
ENSPCIP00000039767	XRN_N	PF03159.18	2.7e-94	1	1
ENSPCIP00000039768	XRN_N	PF03159.18	2.9e-94	1	1
ENSPCIP00000039766	XRN_N	PF03159.18	2.9e-94	1	1
ENSPCIP00000039763	XRN_N	PF03159.18	3.1e-94	1	1
ENSPCIP00000039781	XRN_N	PF03159.18	1.9e-77	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCIT00000048998	XRN1-208	3438	-	ENSPCIP00000039777	1145 (aa)	-	-
ENSPCIT00000048989	XRN1-204	4989	-	ENSPCIP00000039768	1662 (aa)	-	-
ENSPCIT00000048997	XRN1-207	4410	-	ENSPCIP00000039776	1469 (aa)	-	-
ENSPCIT00000048996	XRN1-206	4266	-	ENSPCIP00000039775	1421 (aa)	-	-
ENSPCIT00000048988	XRN1-203	5130	-	ENSPCIP00000039767	1709 (aa)	-	-
ENSPCIT00000048991	XRN1-205	4677	-	ENSPCIP00000039770	1558 (aa)	-	-
ENSPCIT00000049002	XRN1-210	4587	-	ENSPCIP00000039781	1528 (aa)	-	-
ENSPCIT00000048987	XRN1-202	5169	-	ENSPCIP00000039766	1722 (aa)	-	-
ENSPCIT00000048999	XRN1-209	2904	-	ENSPCIP00000039778	967 (aa)	-	-
ENSPCIT00000048984	XRN1-201	5181	-	ENSPCIP00000039763	1726 (aa)	-	-

Gene Model

Click here to download ENSPCIG00000028735's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCIG00000028735's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPCIG00000028735	XRN1	62	38.690	ENSPCIG00000023529	XRN2	77	37.946

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCIG00000028735	XRN1	99	89.664	ENSG00000114127	XRN1	98	97.143	Homo_sapiens
ENSPCIG00000028735	XRN1	99	78.378	ENSAPOG00000000622	xrn1	97	74.247	Acanthochromis_polyacanthus
ENSPCIG00000028735	XRN1	99	89.604	ENSAMEG00000012538	XRN1	95	87.638	Ailuropoda_melanoleuca
ENSPCIG00000028735	XRN1	99	78.254	ENSACIG00000001057	xrn1	97	72.982	Amphilophus_citrinellus
ENSPCIG00000028735	XRN1	99	78.503	ENSAOCG00000014097	xrn1	98	70.738	Amphiprion_ocellaris
ENSPCIG00000028735	XRN1	99	78.503	ENSAPEG00000006620	xrn1	93	71.026	Amphiprion_percula
ENSPCIG00000028735	XRN1	99	76.070	ENSATEG00000009752	xrn1	100	68.674	Anabas_testudineus
ENSPCIG00000028735	XRN1	97	89.718	ENSAPLG00000004905	XRN1	95	86.240	Anas_platyrhynchos
ENSPCIG00000028735	XRN1	99	86.328	ENSACAG00000004985	XRN1	100	80.670	Anolis_carolinensis
ENSPCIG00000028735	XRN1	99	89.762	ENSANAG00000029013	XRN1	99	88.958	Aotus_nancymaae
ENSPCIG00000028735	XRN1	99	77.813	ENSACLG00000004806	xrn1	90	73.234	Astatotilapia_calliptera
ENSPCIG00000028735	XRN1	99	74.444	ENSAMXG00000019370	xrn1	95	95.146	Astyanax_mexicanus
ENSPCIG00000028735	XRN1	99	89.576	ENSBTAG00000011524	XRN1	100	81.505	Bos_taurus
ENSPCIG00000028735	XRN1	93	52.200	WBGene00012730	xrn-1	81	38.623	Caenorhabditis_elegans
ENSPCIG00000028735	XRN1	99	89.762	ENSCJAG00000001872	XRN1	100	81.527	Callithrix_jacchus
ENSPCIG00000028735	XRN1	99	90.194	ENSCAFG00000007783	XRN1	95	88.003	Canis_familiaris
ENSPCIG00000028735	XRN1	99	90.194	ENSCAFG00020009120	XRN1	99	87.951	Canis_lupus_dingo
ENSPCIG00000028735	XRN1	99	89.753	ENSCHIG00000019192	XRN1	95	87.924	Capra_hircus
ENSPCIG00000028735	XRN1	99	89.488	ENSTSYG00000002705	XRN1	100	81.177	Carlito_syrichta
ENSPCIG00000028735	XRN1	97	68.326	ENSCAPG00000004604	-	94	93.427	Cavia_aperea
ENSPCIG00000028735	XRN1	100	89.050	ENSCCAG00000034800	XRN1	99	89.666	Cebus_capucinus
ENSPCIG00000028735	XRN1	99	90.106	ENSCATG00000041794	XRN1	100	81.760	Cercocebus_atys
ENSPCIG00000028735	XRN1	100	88.946	ENSCLAG00000001451	XRN1	99	89.984	Chinchilla_lanigera
ENSPCIG00000028735	XRN1	99	90.106	ENSCSAG00000011265	XRN1	100	81.818	Chlorocebus_sabaeus
ENSPCIG00000028735	XRN1	63	98.701	ENSCHOG00000013961	-	62	98.701	Choloepus_hoffmanni
ENSPCIG00000028735	XRN1	86	62.261	ENSCSAVG00000008584	-	98	45.253	Ciona_savignyi
ENSPCIG00000028735	XRN1	100	89.669	ENSCANG00000037495	XRN1	99	89.984	Colobus_angolensis_palliatus
ENSPCIG00000028735	XRN1	99	88.604	ENSCGRG00001019411	Xrn1	99	88.871	Cricetulus_griseus_chok1gshd
ENSPCIG00000028735	XRN1	99	88.604	ENSCGRG00000012464	Xrn1	99	88.871	Cricetulus_griseus_crigri
ENSPCIG00000028735	XRN1	99	77.583	ENSCSEG00000021285	xrn1	93	97.087	Cynoglossus_semilaevis
ENSPCIG00000028735	XRN1	99	77.548	ENSCVAG00000013089	xrn1	99	74.121	Cyprinodon_variegatus
ENSPCIG00000028735	XRN1	99	80.476	ENSDARG00000091652	xrn1	98	80.761	Danio_rerio
ENSPCIG00000028735	XRN1	99	88.781	ENSDORG00000013833	Xrn1	100	79.227	Dipodomys_ordii
ENSPCIG00000028735	XRN1	94	53.431	FBgn0020261	pcm	73	40.850	Drosophila_melanogaster
ENSPCIG00000028735	XRN1	86	93.694	ENSETEG00000003978	XRN1	88	93.548	Echinops_telfairi
ENSPCIG00000028735	XRN1	100	89.463	ENSEASG00005002687	XRN1	99	89.825	Equus_asinus_asinus
ENSPCIG00000028735	XRN1	99	89.753	ENSECAG00000008301	XRN1	100	81.924	Equus_caballus
ENSPCIG00000028735	XRN1	84	91.579	ENSEEUG00000011323	XRN1	92	79.277	Erinaceus_europaeus
ENSPCIG00000028735	XRN1	99	80.032	ENSELUG00000000169	xrn1	89	74.559	Esox_lucius
ENSPCIG00000028735	XRN1	99	83.989	ENSFCAG00000027589	XRN1	99	91.648	Felis_catus
ENSPCIG00000028735	XRN1	99	89.172	ENSFALG00000007021	XRN1	95	83.780	Ficedula_albicollis
ENSPCIG00000028735	XRN1	100	88.843	ENSFDAG00000020494	XRN1	99	89.507	Fukomys_damarensis
ENSPCIG00000028735	XRN1	50	69.647	ENSFHEG00000017356	-	99	72.198	Fundulus_heteroclitus
ENSPCIG00000028735	XRN1	99	75.955	ENSGMOG00000006396	xrn1	83	68.781	Gadus_morhua
ENSPCIG00000028735	XRN1	99	89.809	ENSGALG00000002706	XRN1	100	76.586	Gallus_gallus
ENSPCIG00000028735	XRN1	99	76.312	ENSGACG00000014328	xrn1	97	70.110	Gasterosteus_aculeatus
ENSPCIG00000028735	XRN1	99	88.553	ENSGAGG00000017535	XRN1	94	86.293	Gopherus_agassizii
ENSPCIG00000028735	XRN1	99	89.753	ENSGGOG00000008047	XRN1	100	81.771	Gorilla_gorilla
ENSPCIG00000028735	XRN1	99	75.556	ENSHBUG00000005908	xrn1	98	73.251	Haplochromis_burtoni
ENSPCIG00000028735	XRN1	100	89.463	ENSHGLG00000014476	XRN1	100	89.566	Heterocephalus_glaber_female
ENSPCIG00000028735	XRN1	100	89.463	ENSHGLG00100015130	XRN1	100	89.566	Heterocephalus_glaber_male
ENSPCIG00000028735	XRN1	99	76.935	ENSHCOG00000014062	xrn1	99	72.383	Hippocampus_comes
ENSPCIG00000028735	XRN1	99	79.014	ENSIPUG00000015229	xrn1	90	74.623	Ictalurus_punctatus
ENSPCIG00000028735	XRN1	99	90.106	ENSSTOG00000013552	XRN1	99	89.948	Ictidomys_tridecemlineatus
ENSPCIG00000028735	XRN1	97	88.788	ENSJJAG00000010863	Xrn1	99	89.222	Jaculus_jaculus
ENSPCIG00000028735	XRN1	99	76.592	ENSKMAG00000021356	xrn1	94	76.940	Kryptolebias_marmoratus
ENSPCIG00000028735	XRN1	99	78.344	ENSLBEG00000018656	xrn1	99	95.238	Labrus_bergylta
ENSPCIG00000028735	XRN1	99	85.056	ENSLACG00000009020	XRN1	96	79.545	Latimeria_chalumnae
ENSPCIG00000028735	XRN1	99	82.437	ENSLOCG00000007944	xrn1	100	69.199	Lepisosteus_oculatus
ENSPCIG00000028735	XRN1	99	88.694	ENSLAFG00000015426	XRN1	100	89.242	Loxodonta_africana
ENSPCIG00000028735	XRN1	99	90.194	ENSMFAG00000032599	XRN1	100	81.876	Macaca_fascicularis
ENSPCIG00000028735	XRN1	99	90.106	ENSMMUG00000014038	XRN1	100	81.818	Macaca_mulatta
ENSPCIG00000028735	XRN1	99	89.929	ENSMNEG00000034217	XRN1	100	81.643	Macaca_nemestrina
ENSPCIG00000028735	XRN1	99	78.537	ENSMAMG00000013219	xrn1	92	79.355	Mastacembelus_armatus
ENSPCIG00000028735	XRN1	99	77.813	ENSMZEG00005015099	xrn1	90	73.317	Maylandia_zebra
ENSPCIG00000028735	XRN1	97	86.643	ENSMGAG00000006333	XRN1	100	76.914	Meleagris_gallopavo
ENSPCIG00000028735	XRN1	99	90.283	ENSMICG00000048948	XRN1	98	97.143	Microcebus_murinus
ENSPCIG00000028735	XRN1	99	87.929	ENSMOCG00000008665	Xrn1	99	88.553	Microtus_ochrogaster
ENSPCIG00000028735	XRN1	54	68.392	ENSMMOG00000020896	-	96	68.539	Mola_mola
ENSPCIG00000028735	XRN1	99	96.817	ENSMODG00000021236	XRN1	100	93.003	Monodelphis_domestica
ENSPCIG00000028735	XRN1	99	70.906	ENSMALG00000004098	xrn1	98	66.876	Monopterus_albus
ENSPCIG00000028735	XRN1	99	88.241	MGP_CAROLIEiJ_G0032535	Xrn1	100	92.500	Mus_caroli
ENSPCIG00000028735	XRN1	99	88.273	ENSMUSG00000032410	Xrn1	100	92.500	Mus_musculus
ENSPCIG00000028735	XRN1	99	88.413	MGP_PahariEiJ_G0015404	Xrn1	100	92.500	Mus_pahari
ENSPCIG00000028735	XRN1	99	88.273	MGP_SPRETEiJ_G0033678	Xrn1	100	92.500	Mus_spretus
ENSPCIG00000028735	XRN1	99	90.106	ENSMPUG00000012040	XRN1	100	81.983	Mustela_putorius_furo
ENSPCIG00000028735	XRN1	99	89.664	ENSMLUG00000016885	XRN1	96	87.451	Myotis_lucifugus
ENSPCIG00000028735	XRN1	99	85.224	ENSNGAG00000023964	Xrn1	99	86.264	Nannospalax_galili
ENSPCIG00000028735	XRN1	99	90.106	ENSNLEG00000004726	XRN1	100	81.702	Nomascus_leucogenys
ENSPCIG00000028735	XRN1	79	100.000	ENSMEUG00000014473	-	74	100.000	Notamacropus_eugenii
ENSPCIG00000028735	XRN1	73	91.111	ENSOPRG00000007337	-	79	77.831	Ochotona_princeps
ENSPCIG00000028735	XRN1	99	78.254	ENSONIG00000016673	xrn1	95	72.400	Oreochromis_niloticus
ENSPCIG00000028735	XRN1	92	87.621	ENSOANG00000006735	XRN1	95	87.270	Ornithorhynchus_anatinus
ENSPCIG00000028735	XRN1	99	90.106	ENSOCUG00000001861	XRN1	95	88.161	Oryctolagus_cuniculus
ENSPCIG00000028735	XRN1	99	78.797	ENSORLG00000013005	xrn1	99	71.259	Oryzias_latipes
ENSPCIG00000028735	XRN1	99	78.537	ENSORLG00020005559	xrn1	99	71.667	Oryzias_latipes_hni
ENSPCIG00000028735	XRN1	99	78.219	ENSORLG00015022523	xrn1	91	73.222	Oryzias_latipes_hsok
ENSPCIG00000028735	XRN1	99	77.813	ENSOMEG00000015397	xrn1	100	72.698	Oryzias_melastigma
ENSPCIG00000028735	XRN1	99	87.014	ENSOGAG00000000170	XRN1	100	79.825	Otolemur_garnettii
ENSPCIG00000028735	XRN1	99	89.841	ENSOARG00000006343	XRN1	95	88.003	Ovis_aries
ENSPCIG00000028735	XRN1	99	89.841	ENSPPAG00000010180	XRN1	100	81.808	Pan_paniscus
ENSPCIG00000028735	XRN1	99	89.850	ENSPPRG00000007125	XRN1	100	81.061	Panthera_pardus
ENSPCIG00000028735	XRN1	99	89.938	ENSPTIG00000021081	XRN1	100	81.119	Panthera_tigris_altaica
ENSPCIG00000028735	XRN1	99	89.841	ENSPTRG00000015482	XRN1	100	81.866	Pan_troglodytes
ENSPCIG00000028735	XRN1	99	90.106	ENSPANG00000010638	XRN1	100	81.702	Papio_anubis
ENSPCIG00000028735	XRN1	99	89.382	ENSPSIG00000018050	XRN1	98	82.605	Pelodiscus_sinensis
ENSPCIG00000028735	XRN1	99	75.078	ENSPMGG00000002648	xrn1	98	79.360	Periophthalmus_magnuspinnatus
ENSPCIG00000028735	XRN1	99	88.497	ENSPEMG00000020610	Xrn1	99	88.712	Peromyscus_maniculatus_bairdii
ENSPCIG00000028735	XRN1	93	57.604	ENSPMAG00000002975	xrn1	91	77.586	Petromyzon_marinus
ENSPCIG00000028735	XRN1	99	77.918	ENSPFOG00000013932	xrn1	99	65.109	Poecilia_formosa
ENSPCIG00000028735	XRN1	99	78.219	ENSPLAG00000021653	xrn1	99	65.142	Poecilia_latipinna
ENSPCIG00000028735	XRN1	99	78.006	ENSPMEG00000003076	xrn1	95	65.483	Poecilia_mexicana
ENSPCIG00000028735	XRN1	99	77.567	ENSPREG00000021147	xrn1	100	69.141	Poecilia_reticulata
ENSPCIG00000028735	XRN1	99	89.929	ENSPPYG00000014172	XRN1	100	81.643	Pongo_abelii
ENSPCIG00000028735	XRN1	92	90.842	ENSPCAG00000005638	XRN1	100	75.711	Procavia_capensis
ENSPCIG00000028735	XRN1	100	89.360	ENSPCOG00000013089	XRN1	99	90.419	Propithecus_coquereli
ENSPCIG00000028735	XRN1	99	85.634	ENSPVAG00000016265	XRN1	96	85.529	Pteropus_vampyrus
ENSPCIG00000028735	XRN1	99	77.778	ENSPNYG00000010570	xrn1	99	69.673	Pundamilia_nyererei
ENSPCIG00000028735	XRN1	99	77.690	ENSPNAG00000023531	xrn1	91	72.060	Pygocentrus_nattereri
ENSPCIG00000028735	XRN1	99	88.273	ENSRNOG00000042951	Xrn1	95	86.109	Rattus_norvegicus
ENSPCIG00000028735	XRN1	99	89.841	ENSRBIG00000041227	XRN1	100	81.469	Rhinopithecus_bieti
ENSPCIG00000028735	XRN1	94	54.223	YGL173C	XRN1	81	33.884	Saccharomyces_cerevisiae
ENSPCIG00000028735	XRN1	99	89.938	ENSSBOG00000029561	XRN1	100	81.469	Saimiri_boliviensis_boliviensis
ENSPCIG00000028735	XRN1	97	97.025	ENSSHAG00000016207	XRN1	100	94.365	Sarcophilus_harrisii
ENSPCIG00000028735	XRN1	99	78.503	ENSSFOG00015024211	xrn1	91	74.348	Scleropages_formosus
ENSPCIG00000028735	XRN1	99	78.889	ENSSMAG00000016534	xrn1	97	73.539	Scophthalmus_maximus
ENSPCIG00000028735	XRN1	99	78.855	ENSSDUG00000010306	xrn1	96	73.517	Seriola_dumerili
ENSPCIG00000028735	XRN1	99	78.855	ENSSLDG00000021543	xrn1	100	69.495	Seriola_lalandi_dorsalis
ENSPCIG00000028735	XRN1	89	87.065	ENSSARG00000007741	-	83	80.558	Sorex_araneus
ENSPCIG00000028735	XRN1	50	76.829	ENSSPAG00000009856	-	96	76.829	Stegastes_partitus
ENSPCIG00000028735	XRN1	99	89.172	ENSTGUG00000008498	XRN1	100	78.596	Taeniopygia_guttata
ENSPCIG00000028735	XRN1	99	77.008	ENSTRUG00000004895	xrn1	99	76.681	Takifugu_rubripes
ENSPCIG00000028735	XRN1	95	78.694	ENSTNIG00000017615	xrn1	100	66.464	Tetraodon_nigroviridis
ENSPCIG00000028735	XRN1	92	93.531	ENSTBEG00000003256	XRN1	80	93.299	Tupaia_belangeri
ENSPCIG00000028735	XRN1	99	86.661	ENSTTRG00000012914	XRN1	100	78.005	Tursiops_truncatus
ENSPCIG00000028735	XRN1	99	87.633	ENSUAMG00000001608	XRN1	99	87.358	Ursus_americanus
ENSPCIG00000028735	XRN1	99	90.106	ENSUMAG00000013625	XRN1	95	88.082	Ursus_maritimus
ENSPCIG00000028735	XRN1	99	89.540	ENSVPAG00000004690	XRN1	100	79.009	Vicugna_pacos
ENSPCIG00000028735	XRN1	100	89.979	ENSVVUG00000024461	XRN1	99	90.083	Vulpes_vulpes
ENSPCIG00000028735	XRN1	99	84.019	ENSXETG00000000619	xrn1	99	89.062	Xenopus_tropicalis
ENSPCIG00000028735	XRN1	99	77.707	ENSXCOG00000007917	xrn1	94	73.339	Xiphophorus_couchianus
ENSPCIG00000028735	XRN1	99	76.911	ENSXMAG00000018320	xrn1	97	73.339	Xiphophorus_maculatus